mRNA_P-wetherbeei_contig9617.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9617.1.1
Unique NamemRNA_P-wetherbeei_contig9617.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9617.1.1 vs. uniprot
Match: A0A835ZAN1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAN1_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.760e-33
Identity = 64/111 (57.66%), Postives = 80/111 (72.07%), Query Frame = 1
Query:    1 GDKYKEMSLKSWDENVALAEALAADRHFSGRHIFLSTEDPEVVEEAIREEAWSVMVLPWRRGNENHEELMEMG--DSLFIFSLVNLFLAAEAQHFVGTRSSNWNRLIDELR 327
            GDK  EM+L+SW E+   A+ LA  R F GR  FLSTEDPEVV+EA  +  W ++VLP+RR N +  ++ E+G  D L +FSL NLF+A EA HF+GTR SNWNRLIDELR
Sbjct:  234 GDKGAEMALRSWQEHKTRADELAKARRFRGRTAFLSTEDPEVVKEAHADGTWDILVLPYRRDNGDFAQMAELGVSDDLVLFSLENLFIALEATHFLGTRGSNWNRLIDELR 344          
BLAST of mRNA_P-wetherbeei_contig9617.1.1 vs. uniprot
Match: A0A836CN48_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN48_9STRA)

HSP 1 Score: 100 bits (248), Expect = 5.160e-23
Identity = 60/116 (51.72%), Postives = 69/116 (59.48%), Query Frame = 1
Query:    1 GDKYKEMSLKSWDENVALAEALAADRHFSGRHIFLSTEDPEVVEEAIREEAWSVMVLP-------WRRGNENHEELMEMGDSLFIFSLVNLFLAAEAQHFVGTRSSNWNRLIDELR 327
            GDK  EM L+SW E+   A+ LA  RHF GR +FLSTEDPEVV EA  +   +   LP           +  H  L    D L +FSL NL LA EA HFVG+R SNWNRLIDELR
Sbjct:  195 GDKAFEMVLRSWQEHRTRADELAMARHFEGRTLFLSTEDPEVVTEARADGTSASKCLPNPGIPAPLCTDSPRHRVLAF--DDLILFSLENLLLALEATHFVGSRGSNWNRLIDELR 308          
BLAST of mRNA_P-wetherbeei_contig9617.1.1 vs. uniprot
Match: A0A836CJ51_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ51_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.200e-16
Identity = 49/131 (37.40%), Postives = 69/131 (52.67%), Query Frame = 1
Query:    1 GDKYKEMSLKSWDENVALAEALAADRHF--SGRHIFLSTEDPEVVEEAIREEAWSVMVLPWRR--------------------GNENHEELMEMGDSLFIFSLVNLFLAAEAQHFVGTRSSNWNRLIDELR 327
            GDK+KEM+L+SWD ++  A+  A  R    S R ++L+T+DP VVE A+    W+V VLP                       G  + E+     D + +F+L  L +A EA HFVG R S+W  LID+LR
Sbjct:  215 GDKWKEMNLQSWDAHLHAADVAARARGVPASQRFVYLTTDDPRVVESALATHGWTVYVLPCPLQADGSPLPCRTTDNTTNPAFGISDSEQGHADADEIMLFALEGLMIALEATHFVGQRGSSWTVLIDDLR 345          
BLAST of mRNA_P-wetherbeei_contig9617.1.1 vs. uniprot
Match: A0A835Z6Q9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Q9_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 7.420e-15
Identity = 51/134 (38.06%), Postives = 65/134 (48.51%), Query Frame = 1
Query:    1 GDKYKEMSLKSWDENVALAEALAADRHF--SGRHIFLSTEDPEVVEEAIREEAWSVMVLP----------------------WRRGNENHEELMEMGDSLFIFSLVNLFLAAEAQHFVGTRSSNWNRLIDELRQ 330
            GDK+KEM+L+SWD +   A   A  R    S R ++L+T+DP VVE A     W+  VLP                      +  G E H       D + +FSL  L +A EA HFVG R S+W  LID LRQ
Sbjct:  394 GDKWKEMTLQSWDAHEGAARDAARARGVPESRRAVYLTTDDPTVVESARATPGWTTYVLPCPVAADGALLPCRTTDNTTNPAFDAGTEGHMH----ADEITLFSLEGLMVALEATHFVGQRGSSWTVLIDNLRQ 523          
BLAST of mRNA_P-wetherbeei_contig9617.1.1 vs. uniprot
Match: A0A7S4FRT0_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FRT0_9EUGL)

HSP 1 Score: 72.4 bits (176), Expect = 1.430e-12
Identity = 46/110 (41.82%), Postives = 60/110 (54.55%), Query Frame = 1
Query:    4 DKYKEMSLKSWDENVALAEALAADRHFSGRHIFLSTEDPEVVEEAIREEAWSVMVLPWRRGNENHEELMEM--GDSLFIFSLVNLFLAAEAQHFVGTRSSNWNRLIDELR 327
            DK KEM L      +A AE + A R      IFLS+ED  V++ A +   W    +P  R N NHE  ++   G  L   S++NL+   +  +FVGTR SNW RLIDELR
Sbjct:  344 DKKKEMDLLPLSYYMATAEKIRAIRP-QVTSIFLSSEDGTVIKAADKFPHWKFFTVPEARQNLNHEGFIQRFGGFRLMEISMMNLYFHMQCDYFVGTRMSNWCRLIDELR 452          
BLAST of mRNA_P-wetherbeei_contig9617.1.1 vs. uniprot
Match: A0A7S1IAV2_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IAV2_9EUGL)

HSP 1 Score: 65.1 bits (157), Expect = 4.880e-10
Identity = 43/110 (39.09%), Postives = 57/110 (51.82%), Query Frame = 1
Query:    4 DKYKEMSLKSWDENVALAEALAADRHFSGRHIFLSTEDPEVVEEAIREEAWSVMVLPWRRGNENHEELMEM--GDSLFIFSLVNLFLAAEAQHFVGTRSSNWNRLIDELR 327
            DK KEM L      +A AE + A +      IFLS+ED  V++   +   W    +P  R N NHE  +    G +L   S++NL    +  +FVGTR SNW RLIDE R
Sbjct:  246 DKKKEMDLLPLSSYMAAAERIRALQPEVDT-IFLSSEDGVVIKATEKFPHWKFFTVPENRQNLNHEGFIARYGGFNLMEISMMNLHFHTQCDYFVGTRMSNWCRLIDESR 354          
BLAST of mRNA_P-wetherbeei_contig9617.1.1 vs. uniprot
Match: A0A2K1JX85_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JX85_PHYPA)

HSP 1 Score: 62.0 bits (149), Expect = 6.460e-9
Identity = 47/121 (38.84%), Postives = 60/121 (49.59%), Query Frame = 1
Query:    1 GDKYKEMSLKSWDENVALAEALAADR-HFSGRHIFLSTEDPEVVEEAIREEAWSVMVLPWRR----GNENHEELMEMG-------DSLFIFSLVNLFLAAEAQHFVGTRSSNWNRLIDELR 327
            G+++KE    + +  +  AE+L     +   R IFLSTEDPE V    + + W V      R    GN  H  L           D  FI S++NL +A E   FVG  SSNWNRLIDELR
Sbjct:  371 GNRWKEDRTANNEAFLQAAESLVNQYPNDLQRKIFLSTEDPETVGFFSKLDNWKVQYTTVSRVATDGNVTHPNLALNNFASRYGWDEEFINSILNLQIALECDGFVGQLSSNWNRLIDELR 491          
BLAST of mRNA_P-wetherbeei_contig9617.1.1 vs. uniprot
Match: A0A812NJQ2_9DINO (FucT6 protein (Fragment) n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812NJQ2_9DINO)

HSP 1 Score: 60.8 bits (146), Expect = 1.720e-8
Identity = 46/138 (33.33%), Postives = 64/138 (46.38%), Query Frame = 1
Query:    1 GDKYKEMSLKSWDENVALAEALAADRH----------------------FSGRHIFLSTEDPEVVEEAIR----EEAWSVMVLPWRRGNENHEELM---EMGDSLFIFSLVNLFLAAEAQHFVGTRSSNWNRLIDELR 327
            G K+ E S+ ++ E  ++ + LA D                        +SGR  F+STEDP VV+EA++    E  W V      R N++    +   E      +   +NL LA EA  +V T SSNW RLIDELR
Sbjct:  293 GRKWSEASMYNFTEYKSMLDHLADDSQDLRVLYAEVAESNATFSYPAEAYSGRKTFISTEDPRVVDEALKLCSAEPRWKVFYTKVNRSNDDPWTKIGSFEHARREILIGFMNLELALEADAWVCTLSSNWCRLIDELR 430          
BLAST of mRNA_P-wetherbeei_contig9617.1.1 vs. uniprot
Match: A0A093Z1F2_9PEZI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Pseudogymnoascus sp. VKM F-3775 TaxID=1420901 RepID=A0A093Z1F2_9PEZI)

HSP 1 Score: 60.8 bits (146), Expect = 1.740e-8
Identity = 47/126 (37.30%), Postives = 59/126 (46.83%), Query Frame = 1
Query:    1 GDKYKEMSLKSWDENVALAEALAADRHF-SGRHIFLSTEDPEVVEE--------------AIREEAWSVMVLPWRRGNENHEELMEMGD--SLFIFSLVNLFLAAEAQHFVGTRSSNWNRLIDELR 327
            GDK  EM L  ++E V  AE   A+    S +  FLSTEDP V+E+              +     W    +P R       +L E G+   L I  L+ L +A E   FVGTR S WNRLID LR
Sbjct:  901 GDKGSEMRLVPFNEYVVRAEKFTAENPLGSWKRAFLSTEDPNVIEQMKSMARVTPFLYSGSNARWTWYWSEIP-RLNTSPEIQLREFGNRTDLTIKWLLQLVMAIECDVFVGTRGSGWNRLIDSLR 1025          
BLAST of mRNA_P-wetherbeei_contig9617.1.1 vs. uniprot
Match: A0A812J2B6_SYMPI (FucT6 protein (Fragment) n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812J2B6_SYMPI)

HSP 1 Score: 60.1 bits (144), Expect = 2.790e-8
Identity = 38/89 (42.70%), Postives = 53/89 (59.55%), Query Frame = 1
Query:   82 FSGRHIFLSTEDPEVVEEAIR----EEAWSVMVLPWRRGNEN---HEELMEMGDSLFIFSLVNLFLAAEAQHFVGTRSSNWNRLIDELR 327
            ++ R +FLSTED +VV+EA+R    +  W V+    RR N++   H +  E      + + +NL LA EA  +V T SSNW RLIDELR
Sbjct:  254 YTARKVFLSTEDQQVVDEALRLCGGKPRWEVIYTRVRRSNDDAWVHAKKPEDARYEVLNAFMNLELALEADAWVCTLSSNWCRLIDELR 342          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9617.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZAN1_9STRA1.760e-3357.66Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CN48_9STRA5.160e-2351.72Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CJ51_9STRA2.200e-1637.40Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z6Q9_9STRA7.420e-1538.06Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4FRT0_9EUGL1.430e-1241.82Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S1IAV2_9EUGL4.880e-1039.09Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A2K1JX85_PHYPA6.460e-938.84Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
A0A812NJQ2_9DINO1.720e-833.33FucT6 protein (Fragment) n=2 Tax=Symbiodinium TaxI... [more]
A0A093Z1F2_9PEZI1.740e-837.30Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A812J2B6_SYMPI2.790e-842.70FucT6 protein (Fragment) n=1 Tax=Symbiodinium pilo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9617contigP-wetherbeei_contig9617:7..336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog3218.PP1S95_118V6.2
Model size330
Max annot lvl33090|Viridiplantae
KEGG koko:K00717
KEGG ReactionR05988,R09319
KEGG Pathwayko00510,ko00513,ko00533,ko01100,ko05202,map00510,map00513,map00533,map01100,map05202
KEGG ModuleM00075
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.19e-09
EggNOG OGs28KCQ@1|root,2QSTM@2759|Eukaryota,37MRD@33090|Viridiplantae
EC2.4.1.68
Cds size312
CAZyGT23
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187101.9842286-CDS-P-wetherbeei_contig9617:6..3181683187101.9842286-CDS-P-wetherbeei_contig9617:6..318Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9617 7..318 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187101.9962542-UTR-P-wetherbeei_contig9617:318..3361683187101.9962542-UTR-P-wetherbeei_contig9617:318..336Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9617 319..336 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9617.1.1prot_P-wetherbeei_contig9617.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9617 7..318 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9617.1.1

>prot_P-wetherbeei_contig9617.1.1 ID=prot_P-wetherbeei_contig9617.1.1|Name=mRNA_P-wetherbeei_contig9617.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=104bp
MSLKSWDENVALAEALAADRHFSGRHIFLSTEDPEVVEEAIREEAWSVMV
LPWRRGNENHEELMEMGDSLFIFSLVNLFLAAEAQHFVGTRSSNWNRLID
ELRQ
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mRNA from alignment at P-wetherbeei_contig9617:7..336-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9617.1.1 ID=mRNA_P-wetherbeei_contig9617.1.1|Name=mRNA_P-wetherbeei_contig9617.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig9617:7..336- (Phaeothamnion wetherbeei SAG_119_79)
GGCGACAAGTACAAGGAAATGTCCCTCAAATCATGGGACGAAAACGTCGC TCTCGCCGAGGCTTTGGCTGCCGACCGTCACTTCAGCGGCCGCCACATCT TTCTTTCGACCGAAGATCCAGAGGTTGTCGAAGAAGCGATCCGAGAAGAA GCGTGGAGTGTCATGGTACTGCCATGGCGGCGCGGCAACGAGAATCACGA GGAGCTTATGGAGATGGGCGACAGCCTCTTCATCTTTTCGCTCGTCAACC TCTTTCTGGCTGCTGAGGCGCAGCACTTCGTGGGCACGCGGAGCTCCAAC TGGAACCGCCTCATCGATGAGCTGCGGCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9617:7..336-

>mRNA_P-wetherbeei_contig9617.1.1 ID=mRNA_P-wetherbeei_contig9617.1.1|Name=mRNA_P-wetherbeei_contig9617.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=312bp|location=Sequence derived from alignment at P-wetherbeei_contig9617:7..336- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCCTCAAATCATGGGACGAAAACGTCGCTCTCGCCGAGGCTTTGGC
TGCCGACCGTCACTTCAGCGGCCGCCACATCTTTCTTTCGACCGAAGATC
CAGAGGTTGTCGAAGAAGCGATCCGAGAAGAAGCGTGGAGTGTCATGGTA
CTGCCATGGCGGCGCGGCAACGAGAATCACGAGGAGCTTATGGAGATGGG
CGACAGCCTCTTCATCTTTTCGCTCGTCAACCTCTTTCTGGCTGCTGAGG
CGCAGCACTTCGTGGGCACGCGGAGCTCCAACTGGAACCGCCTCATCGAT
GAGCTGCGGCAG
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