mRNA_P-wetherbeei_contig9600.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9600.2.1
Unique NamemRNA_P-wetherbeei_contig9600.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9600.2.1 vs. uniprot
Match: A0A2J7ZHU3_9CHLO (DLH domain-containing protein (Fragment) n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZHU3_9CHLO)

HSP 1 Score: 86.3 bits (212), Expect = 2.180e-20
Identity = 39/64 (60.94%), Postives = 49/64 (76.56%), Query Frame = 1
Query:   16 LKSVSFGPDNSIPGFEIGAKDAAAIVFVQEWWGVTNIVKQQAKYFAEHGYRVLVPDLYKGTVGV 207
            ++ V+FG   ++PGFE G+  A  ++ VQEWWGVT IVKQQA+  A  G+RVLVPDLYKGTVGV
Sbjct:   43 MRQVTFGT-GALPGFEAGSTSAPGVLLVQEWWGVTEIVKQQAELIAAEGFRVLVPDLYKGTVGV 105          
BLAST of mRNA_P-wetherbeei_contig9600.2.1 vs. uniprot
Match: A0A836B6B9_9CHLO (DLH domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A836B6B9_9CHLO)

HSP 1 Score: 84.0 bits (206), Expect = 4.410e-18
Identity = 40/70 (57.14%), Postives = 52/70 (74.29%), Query Frame = 1
Query:   16 LKSVSFGPDNSIPGFEIGAKDAAAIVFVQEWWGVTNIVKQQAKYFAEHG------YRVLVPDLYKGTVGV 207
            L++V+FGP   +PGFE+G   A A++ +QEWWGVT++VKQQA+  A  G      +RVLVPDLYKGTVGV
Sbjct:    9 LRAVTFGPSR-LPGFEVGPAHAPAVLLLQEWWGVTDVVKQQARLLAAAGPAAAGGFRVLVPDLYKGTVGV 77          
BLAST of mRNA_P-wetherbeei_contig9600.2.1 vs. uniprot
Match: A0A150H4E6_GONPE (SET domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H4E6_GONPE)

HSP 1 Score: 85.9 bits (211), Expect = 5.550e-18
Identity = 42/67 (62.69%), Postives = 50/67 (74.63%), Query Frame = 1
Query:   13 ELKSVSFGPDNSIPGFEIGAKDAA--AIVFVQEWWGVTNIVKQQAKYFAEHGYRVLVPDLYKGTVGV 207
            EL  V+FGPD  +PGFEI    A    +V +QEWWGVT +VKQQA+  A+ G+RVLVPDLYKGTVGV
Sbjct:  382 ELVPVAFGPDR-LPGFEIATGPATQPGVVLLQEWWGVTPLVKQQARLIADRGFRVLVPDLYKGTVGV 447          
BLAST of mRNA_P-wetherbeei_contig9600.2.1 vs. uniprot
Match: A0A835TCW6_9CHLO (DLH domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835TCW6_9CHLO)

HSP 1 Score: 82.8 bits (203), Expect = 8.290e-18
Identity = 36/64 (56.25%), Postives = 49/64 (76.56%), Query Frame = 1
Query:   16 LKSVSFGPDNSIPGFEIGAKDAAAIVFVQEWWGVTNIVKQQAKYFAEHGYRVLVPDLYKGTVGV 207
            L  VSFG  + IPG+EIG K+  AI+ +QEWWGVT+I+K QA+  ++ G+R L+PDLYKG +GV
Sbjct:    2 LTKVSFGASD-IPGYEIGDKNLPAIIVIQEWWGVTDIIKNQAEQLSKQGFRCLIPDLYKGKIGV 64          
BLAST of mRNA_P-wetherbeei_contig9600.2.1 vs. uniprot
Match: A0A7S0SG32_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SG32_9CHLO)

HSP 1 Score: 82.4 bits (202), Expect = 1.270e-17
Identity = 36/66 (54.55%), Postives = 48/66 (72.73%), Query Frame = 1
Query:   10 LELKSVSFGPDNSIPGFEIGAKDAAAIVFVQEWWGVTNIVKQQAKYFAEHGYRVLVPDLYKGTVGV 207
            +E+  VSFG D++IPG+E G K    ++ +QEWWGVT  +K+QA Y +  GYR LVPDLYKG +GV
Sbjct:    1 MEMAKVSFG-DDAIPGYECGDKTLPGVIVLQEWWGVTENIKKQALYISSKGYRCLVPDLYKGKLGV 65          
BLAST of mRNA_P-wetherbeei_contig9600.2.1 vs. uniprot
Match: A0A2V0P1M3_9CHLO (Carboxymethylenebutenolidase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P1M3_9CHLO)

HSP 1 Score: 82.8 bits (203), Expect = 1.480e-17
Identity = 34/64 (53.12%), Postives = 48/64 (75.00%), Query Frame = 1
Query:   16 LKSVSFGPDNSIPGFEIGAKDAAAIVFVQEWWGVTNIVKQQAKYFAEHGYRVLVPDLYKGTVGV 207
            +  V FGP + +PG+E G KDA  ++ +QEWWG+T I+K+QA   ++ G+RVLVPDLYKG +GV
Sbjct:   37 MDKVEFGP-SKLPGYEAGPKDAPGVIVLQEWWGITPIIKEQALMISKEGFRVLVPDLYKGKIGV 99          
BLAST of mRNA_P-wetherbeei_contig9600.2.1 vs. uniprot
Match: A0A835STI1_CHLIN (DLH domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835STI1_CHLIN)

HSP 1 Score: 81.6 bits (200), Expect = 2.340e-17
Identity = 36/66 (54.55%), Postives = 49/66 (74.24%), Query Frame = 1
Query:   10 LELKSVSFGPDNSIPGFEIGAKDAAAIVFVQEWWGVTNIVKQQAKYFAEHGYRVLVPDLYKGTVGV 207
            + L  V+FG    IPG+EIG K+  A++ VQEWWGVT+I+K QA+  ++ G+R LVPDLYKG +GV
Sbjct:    1 MALTKVAFGAAG-IPGYEIGDKNLPAVIVVQEWWGVTDIIKNQAEQLSKQGFRCLVPDLYKGKIGV 65          
BLAST of mRNA_P-wetherbeei_contig9600.2.1 vs. uniprot
Match: A0A2K3DQG5_CHLRE (DLH domain-containing protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DQG5_CHLRE)

HSP 1 Score: 81.3 bits (199), Expect = 3.290e-17
Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = 1
Query:   10 LELKSVSFGPDNSIPGFEIGAKDAAAIVFVQEWWGVTNIVKQQAKYFAEHGYRVLVPDLYKGTVGV 207
            + L  VSFG    IPG+EIG K   A++ +QEWWGVT I+K QA+  ++ G+R L+PDLYKG +GV
Sbjct:    1 MALTKVSFGAAG-IPGYEIGDKSLPAVILIQEWWGVTEIIKYQAEQLSKQGFRCLIPDLYKGKIGV 65          
BLAST of mRNA_P-wetherbeei_contig9600.2.1 vs. uniprot
Match: A0A7R9UUV4_DIALT (Hypothetical protein (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UUV4_DIALT)

HSP 1 Score: 76.3 bits (186), Expect = 6.260e-16
Identity = 33/61 (54.10%), Postives = 40/61 (65.57%), Query Frame = 1
Query:   25 VSFGPDNSIPGFEIGAKDAAAIVFVQEWWGVTNIVKQQAKYFAEHGYRVLVPDLYKGTVGV 207
            V FGP   +PGF +G   A A++ VQEWWGVT  V   A   A  G+RVL+PDLYKG +GV
Sbjct:   32 VGFGPSKDVPGFAMGPAGAPAVIVVQEWWGVTEQVLDHAGRIATTGFRVLIPDLYKGKIGV 92          
BLAST of mRNA_P-wetherbeei_contig9600.2.1 vs. uniprot
Match: Q5YBA8_HELSJ (Carboxymethylenebutenolidase I (Fragment) n=1 Tax=Helicosporidium sp. subsp. Simulium jonesii TaxID=145475 RepID=Q5YBA8_HELSJ)

HSP 1 Score: 76.3 bits (186), Expect = 6.850e-16
Identity = 33/68 (48.53%), Postives = 50/68 (73.53%), Query Frame = 1
Query:    4 GHLELKSVSFGPDNSIPGFEIGAKDAAAIVFVQEWWGVTNIVKQQAKYFAEHGYRVLVPDLYKGTVGV 207
            G   L+ +++G D ++P   +GA+ A A++ VQEWWGVT I+K+QA+  A  G+RVL+PDLY+G +GV
Sbjct:   41 GCRPLEKITYGSD-ALPAHVMGARGAPAVIAVQEWWGVTPIIKRQAEALAARGFRVLIPDLYRGKLGV 107          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9600.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2J7ZHU3_9CHLO2.180e-2060.94DLH domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A836B6B9_9CHLO4.410e-1857.14DLH domain-containing protein n=1 Tax=Chlamydomona... [more]
A0A150H4E6_GONPE5.550e-1862.69SET domain-containing protein n=1 Tax=Gonium pecto... [more]
A0A835TCW6_9CHLO8.290e-1856.25DLH domain-containing protein n=1 Tax=Chlamydomona... [more]
A0A7S0SG32_9CHLO1.270e-1754.55Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
A0A2V0P1M3_9CHLO1.480e-1753.13Carboxymethylenebutenolidase n=1 Tax=Raphidocelis ... [more]
A0A835STI1_CHLIN2.340e-1754.55DLH domain-containing protein n=1 Tax=Chlamydomona... [more]
A0A2K3DQG5_CHLRE3.290e-1753.03DLH domain-containing protein n=2 Tax=Chlamydomona... [more]
A0A7R9UUV4_DIALT6.260e-1654.10Hypothetical protein (Fragment) n=1 Tax=Diacronema... [more]
Q5YBA8_HELSJ6.850e-1648.53Carboxymethylenebutenolidase I (Fragment) n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9600contigP-wetherbeei_contig9600:2109..2407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog3055.EDO97321
PFAMsDLH
Model size207
Max annot lvl3041|Chlorophyta
KEGG rclassRC01018,RC01906,RC01907,RC02441,RC02467,RC02468,RC02674,RC02675,RC02686
KEGG koko:K01061
KEGG ReactionR03893,R05510,R05511,R06835,R06838,R08120,R08121,R09136,R09220,R09222
KEGG Pathwayko00361,ko00364,ko00623,ko01100,ko01110,ko01120,ko01130,map00361,map00364,map00623,map01100,map01110,map01120,map01130
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.86e-19
EggNOG OGsCOG0412@1|root,KOG3043@2759|Eukaryota,37IJC@33090|Viridiplantae,34KE2@3041|Chlorophyta
EC3.1.1.45
DescriptionDienelactone hydrolase family
Cds size207
COG categoryQ
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187101.2480302-CDS-P-wetherbeei_contig9600:2108..22131683187101.2480302-CDS-P-wetherbeei_contig9600:2108..2213Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9600 2109..2213 +
1683187101.2674682-CDS-P-wetherbeei_contig9600:2305..24071683187101.2674682-CDS-P-wetherbeei_contig9600:2305..2407Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9600 2306..2407 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9600.2.1prot_P-wetherbeei_contig9600.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9600 2109..2407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9600.2.1

>prot_P-wetherbeei_contig9600.2.1 ID=prot_P-wetherbeei_contig9600.2.1|Name=mRNA_P-wetherbeei_contig9600.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=69bp
MGHLELKSVSFGPDNSIPGFEIGAKDAAAIVFVQEWWGVTNIVKQQAKYF
AEHGYRVLVPDLYKGTVGV
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mRNA from alignment at P-wetherbeei_contig9600:2109..2407+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9600.2.1 ID=mRNA_P-wetherbeei_contig9600.2.1|Name=mRNA_P-wetherbeei_contig9600.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=299bp|location=Sequence derived from alignment at P-wetherbeei_contig9600:2109..2407+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCCACTTGGAGCTGAAGAGCGTAAGCTTTGGACCGGACAACAGCAT CCCTGGCTTCGAAATCGGCGCGAAAGATGCTGCAGCTATTGTATTCGTGC AAGAGGTGAGTTTCCTTCCCACCCTCCATGCAGTATCATCTGCTCGATCT CAACAAGTTCTAGTTTTTACCTTTCTCCTCGATTCCTCGGTTTGCAGTGG TGGGGCGTCACCAACATTGTGAAACAGCAGGCGAAATACTTTGCGGAACA CGGCTACCGCGTCCTTGTGCCCGACCTCTACAAGGGGACGGTAGGTGTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9600:2109..2407+

>mRNA_P-wetherbeei_contig9600.2.1 ID=mRNA_P-wetherbeei_contig9600.2.1|Name=mRNA_P-wetherbeei_contig9600.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=207bp|location=Sequence derived from alignment at P-wetherbeei_contig9600:2109..2407+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCCACTTGGAGCTGAAGAGCGTAAGCTTTGGACCGGACAACAGCAT
CCCTGGCTTCGAAATCGGCGCGAAAGATGCTGCAGCTATTGTATTCGTGC
AAGAGTGGTGGGGCGTCACCAACATTGTGAAACAGCAGGCGAAATACTTT
GCGGAACACGGCTACCGCGTCCTTGTGCCCGACCTCTACAAGGGGACGGT
AGGTGTT
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