mRNA_P-wetherbeei_contig960.3.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig960.3.3
Unique NamemRNA_P-wetherbeei_contig960.3.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig960.3.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig960contigP-wetherbeei_contig960:4252..8310 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2681
Hectar predicted targeting categoryother localisation
Exons6
Cds size1896
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig960.3.3prot_P-wetherbeei_contig960.3.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig960 4756..8029 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187100.9380434-UTR-P-wetherbeei_contig960:4251..47551683187100.9380434-UTR-P-wetherbeei_contig960:4251..4755Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig960 4252..4755 -
1683187100.9963157-UTR-P-wetherbeei_contig960:8029..83101683187100.9963157-UTR-P-wetherbeei_contig960:8029..8310Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig960 8030..8310 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187100.9468143-CDS-P-wetherbeei_contig960:4755..60121683187100.9468143-CDS-P-wetherbeei_contig960:4755..6012Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig960 4756..6012 -
1683187100.9553008-CDS-P-wetherbeei_contig960:6300..64981683187100.9553008-CDS-P-wetherbeei_contig960:6300..6498Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig960 6301..6498 -
1683187100.9639137-CDS-P-wetherbeei_contig960:6849..68971683187100.9639137-CDS-P-wetherbeei_contig960:6849..6897Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig960 6850..6897 -
1683187100.972022-CDS-P-wetherbeei_contig960:7104..71761683187100.972022-CDS-P-wetherbeei_contig960:7104..7176Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig960 7105..7176 -
1683187100.9800267-CDS-P-wetherbeei_contig960:7420..75071683187100.9800267-CDS-P-wetherbeei_contig960:7420..7507Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig960 7421..7507 -
1683187100.9879987-CDS-P-wetherbeei_contig960:7795..80291683187100.9879987-CDS-P-wetherbeei_contig960:7795..8029Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig960 7796..8029 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig960.3.3

>prot_P-wetherbeei_contig960.3.3 ID=prot_P-wetherbeei_contig960.3.3|Name=mRNA_P-wetherbeei_contig960.3.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=632bp
MNASSTIASGDGGRDGGGGGASSSGGGGGCGFAGGDDNSEGGEADHGGGG
GDDGDDGDDGGEVGPEESEEALHARIRQKVAAEYEAELGWYQRRLHDLTN
GAESGAEDKLVGLWDQVGMVQSQASKVNTLETELSLLREQLVEARELAEL
AEREVAERDRTIEEMQAYSSQRESSIVDFKRRTEAEQADFSRRHNTEVAL
LRNALKTMQAEKASRRMSIRPSCCLLKIPANGGDSSTSPPAASVPTAPSR
KPNRKTKLRKQNTELERNRTKTRDILIKQDLYMQQKRLRDEAAQRAANET
AKLVFAAIMRNGYSVGGGPAAAAADGGGSGGGTELHAEVERLQHEAEQRE
EHIAALSAMYREALQWGLNSFPKALIAPGMFGDAPTALMASLPPPAPLRT
ASGGSAGGAGGGAAGGGGGAAAAPAAATAAAAGAGGGSRVLSYHNNTDNL
ASLMASNGHLVSLMAAHGIGANGAPIGRVTNGAAAGGGWDAANGAALPGS
GMFDRKAWQAAMMQASGNGVAAVGVPAEKRPARAPSPPNYGNSPWVSAKG
MAPVAAMAAAAVTAAAPLAAQSLPPPTGTAPVPAVAAAALPCAATANVGP
AGLFPVGLPPKVHVPGRDDDGVAVVDNFPGP*
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mRNA from alignment at P-wetherbeei_contig960:4252..8310-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig960.3.3 ID=mRNA_P-wetherbeei_contig960.3.3|Name=mRNA_P-wetherbeei_contig960.3.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=4059bp|location=Sequence derived from alignment at P-wetherbeei_contig960:4252..8310- (Phaeothamnion wetherbeei SAG_119_79)
AGTCGCACAACCTGGCGGCGCCCGCTGCAAAGCAGCGGAAAAGCCCGTCG
CCGCAGCACGTGTACTCGCCAATCCTCGGCAAGACGGTGACGGAGGGAGT
CGGCGGCGGCGGGGGAGGCGGCAGCAGCGGGAACGAGTTTTCGTTTGTGG
CAGACGGCGGCGACGGCGGCGGAAGCGGCGGAAGCGGCGGAAGCGGTAAC
GCCACGGACGAGGGCGCCGACGGCGACGACAGCAGCGGCGGTGGGGGTGG
GGATGAGGTGGAGGACGATGGCGGATGTTACATGAACGCCAGCAGCACAA
TCGCCAGCGGCGATGGCGGCCGCGATGGCGGTGGTGGCGGAGCGTCCAGC
AGTGGTGGCGGCGGAGGCTGCGGATTCGCTGGCGGGGACGACAATTCTGA
GGGCGGCGAAGCAGACCACGGCGGCGGCGGCGGCGACGACGGCGACGACG
GCGACGACGGCGGAGAAGTCGGGCCCGAGGAGAGCGAGGAGGCTCTGCAC
GCTCGCATTCGGCAGGTACGTCTTGGCCCCTCTTTACTCGGACTGATGGG
CCCGTCATTTTCGTGTGATGAATGTTCTGTCCGTGTCTCCTTGTTCCTTT
TCGTTTCCGCCAATGCAGAGCTTTCCAGTGGCTTTTGTGTTATGTGTAGA
GCGCTAATTATGCTGCTTGGTGTCGGCGTGATGGCGGCGCTGTCGGTGCG
AGGCGTTCTAATCCCTTGCTGCGACGGATTCCTCTGCTTTCGTGTTTTCT
CCTTCTCCTTCTTCTCTTTCTTTCCATTCTTCCTTCCCATTCTGTCGCCG
CAGAAAGTGGCGGCGGAGTACGAGGCGGAGCTGGGATGGTACCAGCGGCG
TCTCCACGACCTTACCAACGGGGCGGAGAGCGGCGCAGAGGCAAGCCAAC
CGAACCGACAGAGCGACCGGAATTCCGCAGCCGGCGGCTGCTGACTTAAG
CCTCGACATCCGCGGCGCTTCCATCTTTTTCCATTGAAGGTCTTTTGATT
CATGTTCGGCCTCCACTTTGCTCGATGGCCTTGCAACGTTGCAACGGCTG
TAACGGCAACACCGCTTTTGTTCTCTCTCTTCCTCTTTGACTCCCAACGC
CACCCGACCTTTTGGCGGCCTTCCTGCCCACCAGGACAAGCTAGTCGGCC
TTTGGGACCAGGTGGGGATGGTGCAGAGCCAAGCCTCCAAGGTCAACACC
CTCGAGGCGAGCCTGCCTTGCGCGGTGCCTGTGTCTGCTTTGCAGCCGTT
TTCGTTTGGAGCGGTCGACGTTCGTCTGGCGGACAACAGAGCTGCCTAGA
ATGACAGTTGAATGCAGTGGCGGCGGCAGCGCATATCTGACTGACAACCT
CTCCGCACTTTTTTCCCGTCGCCCTTTTTCTTTCCATATTTGTTTCCCCC
CCCTCTCTTGCAGACTGAGCTGAGCTTGCTGAGGGAACAGTTGGTGGAGG
CACGGGAGCTGGTACGCATCTGCTTCAGCGATTTTGTGATTCCCTAAATG
AGAAGCACGTTCGTTCTGCAGTCCCGCCATCTCACTCGCCTGCCTGCCAG
TTGCAAAGGAAAAGGGACACCTTTAGCCCGGTCCTTTCCTGCTGATCGAA
TTGGCTGAAACACCACTTTTATTCTTTTTCTTTCTTGGTGCTTAATTGGA
GTACTATCCCCTTTCCTCGCCTCTCTAGCAATTCGACAGTTCTTCCTTCT
CTGACAGCAACTCAAACCGAACCCGCTCTACCCAAACCGCGCAACGAACA
AACGACAACCAAAAAGGCAACCGAATCGGCTTCGCACCGCAAACCGTGGA
CAACAATAACAGGCAGAGCTGGCGGAGCGAGAGGTCGCCGAGCGCGACCG
CACCATCGAGGAGATGCAGGCGTACTCGTCGCAGCGGGAGAGCAGCATTG
TTGATTTCAAGCGGCGGACCGAGGCCGAGCAGGCCGACTTCAGCCGCCGT
CATAACACCGAGGTGGCCCTGCTGCGGAACGCTCTCAAGACGATGCAGGC
CGAGAAGGCGGTAAGTATTCGTGTTGCTCGGTAGTCGGATTCCCATTCTT
TTGGTTCTCTTGTTCTGTTTTTTTGCGGTGGAGTCGTCAGCGGGGAAGAA
AAGCAGCGGGGGCACGCGGCGGCGGCGGGTGCCGCGGAGGCGTCGCAGCT
ATTTATGGCCGCAGCTCGCGTGGTGGTGGCGCGGAGTCAAGCTGCTCGGG
CGAAGGCGGTTTCTGTCTCTGCTGCTATCGCTGTTCCATTCAGTCGGTGT
CTCCCCGTTGTCTGTTTCCGCCGCTCGCTGCGTCTATTGTCCGTCCAGAG
CAGGCGCATGTCAATCCGCCCGTCTTGCTGCTTGCTGAAAATCCCAGCGA
ATGGCGGCGATTCCAGCACGTCCCCGCCGGCCGCCTCTGTTCCTACTGCG
CCTTCTCGTAAACCGAATCGAAAAACGAAATTGCGGAAACAAAACACGGA
ACTGGAACGGAACCGCACAAAAACCCGCGACATACTAATCAAACAGGATC
TATACATGCAGCAGAAGCGTTTGAGGGACGAGGCGGCGCAGCGCGCGGCG
AACGAAACGGCCAAATTGGTGTTCGCGGCGATTATGCGCAACGGCTACTC
GGTCGGCGGCGGGCCGGCGGCGGCCGCCGCCGACGGCGGCGGCAGCGGTG
GCGGGACTGAACTCCATGCGGAGGTGGAGCGGTTGCAGCACGAGGCGGAA
CAGAGGGAGGAGCACATCGCGGCGCTGTCGGCCATGTACCGGGAGGCGCT
GCAATGGGGGCTTAACTCGTTCCCGAAGGCCCTCATCGCGCCAGGCATGT
TTGGGGACGCCCCTACGGCTCTCATGGCGAGCCTGCCTCCGCCGGCGCCG
CTGCGCACGGCCTCCGGCGGCAGCGCGGGCGGGGCGGGCGGCGGCGCTGC
TGGCGGTGGCGGCGGCGCTGCTGCCGCTCCCGCCGCTGCTACCGCTGCTG
CAGCTGGGGCCGGCGGCGGCAGCAGGGTGCTCAGCTATCATAACAACACC
GACAACCTGGCCAGCTTAATGGCCTCGAACGGTCATTTGGTCAGCCTTAT
GGCCGCCCACGGCATTGGCGCCAACGGCGCGCCGATCGGCAGAGTTACGA
ACGGCGCGGCGGCAGGTGGCGGCTGGGATGCCGCCAATGGCGCGGCGTTG
CCGGGCAGTGGCATGTTTGACCGAAAGGCGTGGCAGGCGGCAATGATGCA
GGCAAGCGGCAACGGCGTCGCGGCAGTGGGGGTGCCGGCGGAGAAAAGGC
CCGCCCGTGCTCCCTCTCCTCCGAACTACGGCAATTCTCCGTGGGTTTCG
GCGAAGGGAATGGCGCCCGTGGCGGCAATGGCAGCGGCGGCGGTGACGGC
AGCGGCGCCATTGGCTGCACAGTCGCTGCCGCCGCCGACGGGGACAGCGC
CGGTGCCGGCGGTGGCGGCGGCGGCGCTCCCGTGCGCTGCGACGGCGAAC
GTGGGGCCGGCGGGGCTTTTTCCGGTCGGCCTACCCCCGAAGGTACACGT
CCCTGGCAGAGATGATGACGGCGTCGCTGTTGTCGATAATTTTCCGGGGC
CTTGAAGCAGCCTCCCAAGCCGGCCGTCGTGGCAACGGCGTGTTCCGTAC
CACCGGCGCCGGGACGTGCAGGCGCTGTCGTTGCCGGTCTGCCCCGCTGG
TGGGAAGTGCGCTTCGAAGCTACGGCGCTCGCTCCCTGTCTTGCCTTTCC
CACGGCTCACCTGGCTGATTTGATTCAGTCTACTGGGTGGGGGTGCGCAC
AGCGGAGGCGGCCGGCCGGCCCGATCGAGGCTTAGGAATGCACACACATA
CCAATGAAAACAAGGACAAATGCCGGCCGTGGTGGCGAGCGGCTCATAGG
CGATTGGGGGTTGTCTAGATAGTATAGGGAATGTGGGGCGTGGGAGGGAG
GAGACGGCTCGGACGGTGTGGCTTGAGCTTTGCAGTGCGCTGATGGTTCT
TTAGTGCAGTGGGTGCGTAGTAGAAAGAAGGGGGGCGCACGGGAAACCGA
TAGCCTGGGAAGGAGGACGGATGCGCCACCTGTAAGTAACCTTCTATTCT
TGTTGGCCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig960:4252..8310-

>mRNA_P-wetherbeei_contig960.3.3 ID=mRNA_P-wetherbeei_contig960.3.3|Name=mRNA_P-wetherbeei_contig960.3.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1896bp|location=Sequence derived from alignment at P-wetherbeei_contig960:4252..8310- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACGCCAGCAGCACAATCGCCAGCGGCGATGGCGGCCGCGATGGCGG
TGGTGGCGGAGCGTCCAGCAGTGGTGGCGGCGGAGGCTGCGGATTCGCTG
GCGGGGACGACAATTCTGAGGGCGGCGAAGCAGACCACGGCGGCGGCGGC
GGCGACGACGGCGACGACGGCGACGACGGCGGAGAAGTCGGGCCCGAGGA
GAGCGAGGAGGCTCTGCACGCTCGCATTCGGCAGAAAGTGGCGGCGGAGT
ACGAGGCGGAGCTGGGATGGTACCAGCGGCGTCTCCACGACCTTACCAAC
GGGGCGGAGAGCGGCGCAGAGGACAAGCTAGTCGGCCTTTGGGACCAGGT
GGGGATGGTGCAGAGCCAAGCCTCCAAGGTCAACACCCTCGAGACTGAGC
TGAGCTTGCTGAGGGAACAGTTGGTGGAGGCACGGGAGCTGGCAGAGCTG
GCGGAGCGAGAGGTCGCCGAGCGCGACCGCACCATCGAGGAGATGCAGGC
GTACTCGTCGCAGCGGGAGAGCAGCATTGTTGATTTCAAGCGGCGGACCG
AGGCCGAGCAGGCCGACTTCAGCCGCCGTCATAACACCGAGGTGGCCCTG
CTGCGGAACGCTCTCAAGACGATGCAGGCCGAGAAGGCGAGCAGGCGCAT
GTCAATCCGCCCGTCTTGCTGCTTGCTGAAAATCCCAGCGAATGGCGGCG
ATTCCAGCACGTCCCCGCCGGCCGCCTCTGTTCCTACTGCGCCTTCTCGT
AAACCGAATCGAAAAACGAAATTGCGGAAACAAAACACGGAACTGGAACG
GAACCGCACAAAAACCCGCGACATACTAATCAAACAGGATCTATACATGC
AGCAGAAGCGTTTGAGGGACGAGGCGGCGCAGCGCGCGGCGAACGAAACG
GCCAAATTGGTGTTCGCGGCGATTATGCGCAACGGCTACTCGGTCGGCGG
CGGGCCGGCGGCGGCCGCCGCCGACGGCGGCGGCAGCGGTGGCGGGACTG
AACTCCATGCGGAGGTGGAGCGGTTGCAGCACGAGGCGGAACAGAGGGAG
GAGCACATCGCGGCGCTGTCGGCCATGTACCGGGAGGCGCTGCAATGGGG
GCTTAACTCGTTCCCGAAGGCCCTCATCGCGCCAGGCATGTTTGGGGACG
CCCCTACGGCTCTCATGGCGAGCCTGCCTCCGCCGGCGCCGCTGCGCACG
GCCTCCGGCGGCAGCGCGGGCGGGGCGGGCGGCGGCGCTGCTGGCGGTGG
CGGCGGCGCTGCTGCCGCTCCCGCCGCTGCTACCGCTGCTGCAGCTGGGG
CCGGCGGCGGCAGCAGGGTGCTCAGCTATCATAACAACACCGACAACCTG
GCCAGCTTAATGGCCTCGAACGGTCATTTGGTCAGCCTTATGGCCGCCCA
CGGCATTGGCGCCAACGGCGCGCCGATCGGCAGAGTTACGAACGGCGCGG
CGGCAGGTGGCGGCTGGGATGCCGCCAATGGCGCGGCGTTGCCGGGCAGT
GGCATGTTTGACCGAAAGGCGTGGCAGGCGGCAATGATGCAGGCAAGCGG
CAACGGCGTCGCGGCAGTGGGGGTGCCGGCGGAGAAAAGGCCCGCCCGTG
CTCCCTCTCCTCCGAACTACGGCAATTCTCCGTGGGTTTCGGCGAAGGGA
ATGGCGCCCGTGGCGGCAATGGCAGCGGCGGCGGTGACGGCAGCGGCGCC
ATTGGCTGCACAGTCGCTGCCGCCGCCGACGGGGACAGCGCCGGTGCCGG
CGGTGGCGGCGGCGGCGCTCCCGTGCGCTGCGACGGCGAACGTGGGGCCG
GCGGGGCTTTTTCCGGTCGGCCTACCCCCGAAGGTACACGTCCCTGGCAG
AGATGATGACGGCGTCGCTGTTGTCGATAATTTTCCGGGGCCTTGA
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