mRNA_P-wetherbeei_contig9595.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9595.1.1
Unique NamemRNA_P-wetherbeei_contig9595.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9595.1.1 vs. uniprot
Match: A0A835ZQ15_9STRA (Anticodon-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQ15_9STRA)

HSP 1 Score: 113 bits (282), Expect = 7.460e-28
Identity = 71/186 (38.17%), Postives = 112/186 (60.22%), Query Frame = 1
Query:    1 MAVAEPVVGSKVRVTTSTDEVVEGVVYSYVPEFSLLMLK-----RDLAHTITNCAMHVFTMPHVRSIEVLEKAI-----DDPQGFY--RLPSVSEAEVSKKEEKALKDAERLLAQLNLQASPEGQQIFDALAKTMDCEWQDRTIIVYGQVAIHEPYDMESCRSLDG-KAVALARVVKVLGEVRQKL 519
            +A+A   VG +V+VT S+ E++EG+VY+     ++L+L+        A     C+M + +  H+ ++ V++        DD   F   +LP+V+  E+ KKEEKAL++AER +AQLN +A+ EGQ +  AL+KTMDCEW + ++IV+ QV +  PY    C+ L G    AL R+ KVL   R+K+
Sbjct:    2 VAIAAAKVGDRVKVTLSSGEIIEGLVYTEDRMTNMLVLQCSGAAASGAGAAATCSMRMLSREHIIALLVVQAQAWDWTGDDAATFSVAKLPTVTPKELHKKEEKALREAERAMAQLNARATLEGQALCFALSKTMDCEWDNVSLIVFDQVRVDPPYTANDCKMLPGCPPAALERIQKVLEGERRKM 187          
BLAST of mRNA_P-wetherbeei_contig9595.1.1 vs. uniprot
Match: A0A835YRS2_9STRA (Anticodon-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRS2_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.180e-27
Identity = 77/172 (44.77%), Postives = 100/172 (58.14%), Query Frame = 1
Query:   22 VGSKVRVTTSTDEVVEGVVYSYVPEFSLLMLKRDLAHTIT-NCAMHVFTMPHVRSIEVLEKAIDD----PQGFYRLPSVSEAEVSKKEEKALKDAERLLAQLNLQASPEGQQIFDALAKTMDCEWQDRTIIVYGQVAIHEPYDMESCRSLDG-KAVALARVVKVLGEVRQKL 519
            VG++VRV T  +E VEG VY+      +L+L+      +  NC+M +    H+ + EVLE   D     P G  R+ S  E E  +KE KA++DAER L+Q+N  AS E Q IFDALA+TMDCEW   +I++Y QV I  PY    C  L G  A AL RV KVL   R+KL
Sbjct:    5 VGARVRVWTCLNETVEGTVYTVDHTTGMLVLQCTPVPPVGGNCSMRMVNAGHLTATEVLEAPADGGALGPHG--RISSAKELE--RKEAKAMRDAERALSQINFNASGEAQAIFDALARTMDCEWLGLSIVIYDQVQIDPPYAPAQCVRLHGCPAGALERVQKVLEGERRKL 172          
BLAST of mRNA_P-wetherbeei_contig9595.1.1 vs. uniprot
Match: A0A8K1CPS1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPS1_PYTOL)

HSP 1 Score: 105 bits (263), Expect = 1.420e-25
Identity = 67/167 (40.12%), Postives = 96/167 (57.49%), Query Frame = 1
Query:   19 VVGSKVRVTTSTDEVVEGVVYSYVPEFSLLMLKRDLAHTITNCAMHVFTMPHVRSIEVLEKAIDDPQGFYRLPSVSEAEVSKKEEKALKDAERLLAQLNLQASPEGQQIFDALAKTMDCEWQDRTIIVYGQVAIHEPYDMESCRSLDGKAVALARVVKVLGEVRQKL 519
            VVG+KVRV TS +  VEGV+++  P  + L+L+   + T      H+F M  ++SIEV+EKA  D      LP +SE ++ + E+K    AER LA +    S E Q IFDAL KTM C W+ + I V  +V I  PY  ++C S + +   L+R+ KVL   + KL
Sbjct:   14 VVGAKVRVVTSLEVTVEGVIFTLDPIANFLILEESSSETPAKSKTHIFQMDALKSIEVIEKAAGDAN--LNLPHISEDDLLRLEQKNKGIAERALASIGENVSAEAQAIFDALNKTMPCHWEGQNIRVMEEVLIKPPYQPQNCVSSNTQV--LSRIKKVLEGEKNKL 176          
BLAST of mRNA_P-wetherbeei_contig9595.1.1 vs. uniprot
Match: A0A5D6Y5E4_9STRA (AD domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y5E4_9STRA)

HSP 1 Score: 100 bits (248), Expect = 2.950e-23
Identity = 66/167 (39.52%), Postives = 94/167 (56.29%), Query Frame = 1
Query:   19 VVGSKVRVTTSTDEVVEGVVYSYVPEFSLLMLKRDLAHTITNCAMHVFTMPHVRSIEVLEKAIDDPQGFYRLPSVSEAEVSKKEEKALKDAERLLAQLNLQASPEGQQIFDALAKTMDCEWQDRTIIVYGQVAIHEPYDMESCRSLDGKAVALARVVKVLGEVRQKL 519
            VVG++VRV T  DE  EG +++  P  S L L+   A ++      +F +  ++ IEVL KA  D      LP+++E ++ + E++    AER LA +    S E Q IFDAL KTM CEW+ +TI V   V I  PY  ++C S +  A AL+RV KVL   + KL
Sbjct:   24 VVGARVRVLTQADETFEGAIFTVDPVASFLFLEEYAADSVGKGKTRIFQLEALKKIEVLAKAPADAN--VGLPNITEDDLLRLEQRNKSVAERALASIGKGVSTEAQTIFDALNKTMPCEWEGQTIRVMTDVVIKPPYQPQNCVSEN--AQALSRVKKVLEGEKNKL 186          
BLAST of mRNA_P-wetherbeei_contig9595.1.1 vs. uniprot
Match: A0A7S3JR65_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JR65_9STRA)

HSP 1 Score: 100 bits (250), Expect = 3.670e-23
Identity = 54/152 (35.53%), Postives = 88/152 (57.89%), Query Frame = 1
Query:   67 EGVVYSYVPEFSLLMLKRDLAHTITNCAMHVFTMPHVRSIEVLEKAIDDPQGFYR--LPSVSEAEVSKKEEKALKDAERLLAQLNLQASPEGQQIFDALAKTMDCEWQDRTIIVYGQVAIHEPYDMESCRSLDGKAVALARVVKVLGEVRQK 516
            +G VY+  P    L++   +      C + +     ++ IEVL ++    +      LP+V  AE  K+E++A +  ER + QLN  ASPEGQ IFDALA+T++C W+D +I+V  QV I  PY+  +C SLDG   +L R+ K++  ++++
Sbjct:   59 QGTVYTIDPVTQTLVIFNRVNQNSAECELRLIPSHSIKKIEVLRESETASEEISTEILPAVDPAEHEKREKEAYEAMERAMEQLNPNASPEGQFIFDALARTLECNWKDNSILVLDQVCIDPPYEASTCHSLDGDQNSLERIQKIVSGLKKR 210          
BLAST of mRNA_P-wetherbeei_contig9595.1.1 vs. uniprot
Match: A0A2D4BK89_PYTIN (AD domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BK89_PYTIN)

HSP 1 Score: 99.8 bits (247), Expect = 3.950e-23
Identity = 68/167 (40.72%), Postives = 93/167 (55.69%), Query Frame = 1
Query:   19 VVGSKVRVTTSTDEVVEGVVYSYVPEFSLLMLKRDLAHTITNCAMHVFTMPHVRSIEVLEKAIDDPQGFYRLPSVSEAEVSKKEEKALKDAERLLAQLNLQASPEGQQIFDALAKTMDCEWQDRTIIVYGQVAIHEPYDMESCRSLDGKAVALARVVKVLGEVRQKL 519
            VVG+KVRVTT  DE  EGV+++     + L+L+             +F M  ++ IEV+EKA  D      LPSVSE ++ + E+K    AER LA +    S E Q IFDAL KTM C W+ ++I V   V I  PY+ ++C S + +   LARV +VL   R KL
Sbjct:   18 VVGAKVRVTTCHDETFEGVIFTLDAVANFLILEERPVDAPAKSKTRIFQMEALKKIEVVEKAPSDAN--LALPSVSEDDLLRLEQKNKGIAERALASIGKGVSAEAQAIFDALNKTMPCAWEGQSIRVMEDVLIQPPYEPQNCVSANTQV--LARVKRVLEGERNKL 180          
BLAST of mRNA_P-wetherbeei_contig9595.1.1 vs. uniprot
Match: K3WYV9_GLOUD (AD domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WYV9_GLOUD)

HSP 1 Score: 98.6 bits (244), Expect = 1.190e-22
Identity = 66/167 (39.52%), Postives = 90/167 (53.89%), Query Frame = 1
Query:   19 VVGSKVRVTTSTDEVVEGVVYSYVPEFSLLMLKRDLAHTITNCAMHVFTMPHVRSIEVLEKAIDDPQGFYRLPSVSEAEVSKKEEKALKDAERLLAQLNLQASPEGQQIFDALAKTMDCEWQDRTIIVYGQVAIHEPYDMESCRSLDGKAVALARVVKVLGEVRQKL 519
            V+G+KVRV T   E  EGV+++  P  S L+L+   A         +F +  ++ IE+LEKA  D      LPS++E ++ + E++    AER LA +    S E Q IFDAL KTM CEW+   I V G V I  PY  ++C S   K   L RV KVL   + KL
Sbjct:   25 VIGAKVRVLTQAAEAFEGVIFTIDPIASFLILEERFADAPAKNKTRMFQIDALKKIELLEKAPADVNA--NLPSINEDDLLRLEQRNKDIAERALASIGKDVSSEAQAIFDALNKTMPCEWEGTNIRVMGDVLIKPPYQPQNCVST--KPQVLDRVKKVLEGEKNKL 187          
BLAST of mRNA_P-wetherbeei_contig9595.1.1 vs. uniprot
Match: F0WRB4_9STRA (Uncharacterized protein AlNc14C211G8921 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WRB4_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.990e-21
Identity = 59/166 (35.54%), Postives = 96/166 (57.83%), Query Frame = 1
Query:   22 VGSKVRVTTSTDEVVEGVVYSYVPEFSLLMLKRDLAHTITNCAMHVFTMPHVRSIEVLEKAIDDPQGFYRLPSVSEAEVSKKEEKALKDAERLLAQLNLQASPEGQQIFDALAKTMDCEWQDRTIIVYGQVAIHEPYDMESCRSLDGKAVALARVVKVLGEVRQKL 519
            +G+ + VT+S  E +EG V++  P  +LL+L+   +   +    H+F +  ++ I+++  A  D +    LP +SE E+ + E++  ++A+R LA +    SPE Q IFDAL KTM C+W  + I V  +V I  PYD+++C S D    AL RV KVL   + +L
Sbjct:   43 IGAIISVTSSKGESIEGSVFTVDPVANLLILEERKSKATSKKKTHIFHLDALQQIKLVRMA--DAESESGLPHISEEELLRLEQRNKENAQRALASIGPGVSPEAQAIFDALNKTMPCQWDKQNIWVMREVVIRPPYDVKNCVSSD--QAALGRVRKVLEGEKSRL 204          
BLAST of mRNA_P-wetherbeei_contig9595.1.1 vs. uniprot
Match: A0A7S2WJD7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJD7_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 4.210e-21
Identity = 59/164 (35.98%), Postives = 88/164 (53.66%), Query Frame = 1
Query:   25 GSKVRVTTSTDEVVEGVVYSYVPEFSLLMLKRDLAHTITNCAMHVFTMPHVRSIEVLEKAIDDPQGFYRLP--SVSEAEVSKKEEKALKDAERLLAQLNLQASPEGQQIFDALAKTMDCEWQDRTIIVYGQVAIHEPYDMESCRSLDGKAVALARVVKVLGEVR 510
            G+KV V    DEV++G V++       LM++  L HT  +  +       ++SI     A+D  +    LP   +SE  ++K+E  AL   E L+A+LN +A+ EGQ++FDAL +TMDC W    IIV  QV I   Y  + C  LDG   A  R++K++   R
Sbjct:   22 GAKVTVELVHDEVIDGFVHTKDVAMGTLMVRIPLKHTTLSSELRFIMNSAIKSI-----AVDSAKSEPELPVRPISEKVLAKRESNALIQVEALMAELNDEATAEGQRMFDALNRTMDCRWDGTAIIVLDQVRIDPDYTPDKCVCLDGDEAAFNRILKIVTAFR 180          
BLAST of mRNA_P-wetherbeei_contig9595.1.1 vs. uniprot
Match: D0NJK2_PHYIT (AD domain-containing protein n=18 Tax=Phytophthora TaxID=4783 RepID=D0NJK2_PHYIT)

HSP 1 Score: 94.4 bits (233), Expect = 4.470e-21
Identity = 64/167 (38.32%), Postives = 92/167 (55.09%), Query Frame = 1
Query:   22 VGSKVRVTTSTDEVVEGVVYSYVPEFSLLMLKRDLAHTITNCAMHVFTMPHVRSIEVLEKAIDDPQGFY-RLPSVSEAEVSKKEEKALKDAERLLAQLNLQASPEGQQIFDALAKTMDCEWQDRTIIVYGQVAIHEPYDMESCRSLDGKAVALARVVKVLGEVRQKL 519
            VG+KVRV T+  E  EGV+++  P  + L+L+         C   +F +  ++ +EVLE A   P G    LP++S  E+ + E++    AER LA +    S E Q IFDAL KTM CEW+   I V G+V I  PY  ++C S + +   L+RV KVL   + KL
Sbjct:   23 VGAKVRVVTAAKETFEGVIFTLDPVANFLVLEEQDG---AKCKTRIFQLKALQKVEVLEHA---PAGLMLTLPAISSDELLRMEQRNKVLAERALASIGQGVSSEAQVIFDALNKTMPCEWEGANIRVMGEVVIKPPYHPQNCVSANTQV--LSRVKKVLEGEKSKL 181          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9595.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZQ15_9STRA7.460e-2838.17Anticodon-binding domain-containing protein n=1 Ta... [more]
A0A835YRS2_9STRA1.180e-2744.77Anticodon-binding domain-containing protein n=1 Ta... [more]
A0A8K1CPS1_PYTOL1.420e-2540.12Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6Y5E4_9STRA2.950e-2339.52AD domain-containing protein n=1 Tax=Pythium brass... [more]
A0A7S3JR65_9STRA3.670e-2335.53Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A2D4BK89_PYTIN3.950e-2340.72AD domain-containing protein n=1 Tax=Pythium insid... [more]
K3WYV9_GLOUD1.190e-2239.52AD domain-containing protein n=1 Tax=Globisporangi... [more]
F0WRB4_9STRA1.990e-2135.54Uncharacterized protein AlNc14C211G8921 n=1 Tax=Al... [more]
A0A7S2WJD7_9STRA4.210e-2135.98Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D0NJK2_PHYIT4.470e-2138.32AD domain-containing protein n=18 Tax=Phytophthora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9595contigP-wetherbeei_contig9595:1014..1978 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G4D1
PFAMsAD
Model size519
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.61e-30
EggNOG OGs2E9FP@1|root,2SFTQ@2759|Eukaryota
Ec32 ortholog descriptionNovel Sm-like protein with long N- and C-terminal domains.
Ec32 orthologEc-00_007340.1
DescriptionAnticodon-binding domain
Cds size519
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187100.8417492-CDS-P-wetherbeei_contig9595:1013..12581683187100.8417492-CDS-P-wetherbeei_contig9595:1013..1258Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9595 1014..1258 +
1683187100.851444-CDS-P-wetherbeei_contig9595:1397..15631683187100.851444-CDS-P-wetherbeei_contig9595:1397..1563Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9595 1398..1563 +
1683187100.859717-CDS-P-wetherbeei_contig9595:1870..19781683187100.859717-CDS-P-wetherbeei_contig9595:1870..1978Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9595 1871..1978 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9595.1.1prot_P-wetherbeei_contig9595.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9595 1014..1978 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9595.1.1

>prot_P-wetherbeei_contig9595.1.1 ID=prot_P-wetherbeei_contig9595.1.1|Name=mRNA_P-wetherbeei_contig9595.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=173bp
MAVAEPVVGSKVRVTTSTDEVVEGVVYSYVPEFSLLMLKRDLAHTITNCA
MHVFTMPHVRSIEVLEKAIDDPQGFYRLPSVSEAEVSKKEEKALKDAERL
LAQLNLQASPEGQQIFDALAKTMDCEWQDRTIIVYGQVAIHEPYDMESCR
SLDGKAVALARVVKVLGEVRQKL
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mRNA from alignment at P-wetherbeei_contig9595:1014..1978+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9595.1.1 ID=mRNA_P-wetherbeei_contig9595.1.1|Name=mRNA_P-wetherbeei_contig9595.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=965bp|location=Sequence derived from alignment at P-wetherbeei_contig9595:1014..1978+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGTGGCGGAGCCCGTGGTCGGGAGCAAGGTCCGTGTGACTACGTC GACGGATGAGGTCGTTGAGGGCGTCGTGTATTCGTATGTTCCCGAGTTCA GCCTGCTGATGCTCAAGCGCGACCTCGCGCACACCATCACCAACTGCGCG ATGCACGTGTTCACCATGCCCCACGTGCGCAGCATAGAAGTGCTCGAGAA GGCCATCGATGATCCGCAGGGCTTCTATCGACTCCCTTCTGTCAGGTCAG GGATGCCAAAAGAGAAGTGGCGAACGCGCCGTTGCATCCGAAACGTTACC GCAAACGGTCACGCGCCCTCGGGTTCATACTTTCCTCATCGCAATCCCGG TCTATTGTTGGCTTGGAAACTCGACTCCCCACAGCGAGGCCGAGGTGTCA AAGAAGGAGGAGAAGGCGCTCAAGGACGCCGAGCGACTGCTGGCGCAATT AAATCTGCAGGCGTCGCCTGAGGGCCAACAGATCTTCGACGCGCTCGCCA AGACGATGGACTGCGAGTGGCAAGACCGCACCATCATCGTGTATGGCCAG GTATGTACAACATTTAATTAAAGTCGAGAATGCATCACAGCTTCGCTGAA TAAACTTATACTATAATGTTTCGGAAAGGGCGGTAAGCTGGTTCCTTGGA AATGGCGTATCTTTCTCTTTCCCAAATTCTTCTCATTCTGTTCTGAGCCA GTGTGCAATCTTCATTGCAACAGTAGCTTTTCAACGTGCACGAGGTGCCA AATGCGCCCTTGTAAGAGGCTGCCCTTCGCTTTTGCTTTGTCCAAGGGGC TGATACCCGACGCCGGCCGGCCTGCTCTTGCCCCTCCTGCTGGGTTGCGT TCAACAGGTGGCGATTCACGAACCGTACGACATGGAGAGCTGCCGGAGCC TCGACGGAAAGGCAGTGGCGCTCGCCCGGGTCGTCAAGGTGCTGGGGGAA GTGCGACAAAAGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9595:1014..1978+

>mRNA_P-wetherbeei_contig9595.1.1 ID=mRNA_P-wetherbeei_contig9595.1.1|Name=mRNA_P-wetherbeei_contig9595.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig9595:1014..1978+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGTGGCGGAGCCCGTGGTCGGGAGCAAGGTCCGTGTGACTACGTC
GACGGATGAGGTCGTTGAGGGCGTCGTGTATTCGTATGTTCCCGAGTTCA
GCCTGCTGATGCTCAAGCGCGACCTCGCGCACACCATCACCAACTGCGCG
ATGCACGTGTTCACCATGCCCCACGTGCGCAGCATAGAAGTGCTCGAGAA
GGCCATCGATGATCCGCAGGGCTTCTATCGACTCCCTTCTGTCAGCGAGG
CCGAGGTGTCAAAGAAGGAGGAGAAGGCGCTCAAGGACGCCGAGCGACTG
CTGGCGCAATTAAATCTGCAGGCGTCGCCTGAGGGCCAACAGATCTTCGA
CGCGCTCGCCAAGACGATGGACTGCGAGTGGCAAGACCGCACCATCATCG
TGTATGGCCAGGTGGCGATTCACGAACCGTACGACATGGAGAGCTGCCGG
AGCCTCGACGGAAAGGCAGTGGCGCTCGCCCGGGTCGTCAAGGTGCTGGG
GGAAGTGCGACAAAAGCTG
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