mRNA_P-wetherbeei_contig9590.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9590.2.1
Unique NamemRNA_P-wetherbeei_contig9590.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9590.2.1 vs. uniprot
Match: A0A835YHE6_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHE6_9STRA)

HSP 1 Score: 121 bits (303), Expect = 2.800e-30
Identity = 57/74 (77.03%), Postives = 62/74 (83.78%), Query Frame = 1
Query:   10 AKPGESLMRVAERAGVKIATSCRSGLCGTCTTDLEDPNWRTG-SYRPGHQTIRACVAKCSVPKGCEEMVLDVYR 228
            AK GE++  VA RAG+KIATSCRSGLCGTCTTD+EDPNW    +YRPG QTIRACVA  SVP GCEEMVLDVYR
Sbjct: 2221 AKSGETVTTVAARAGIKIATSCRSGLCGTCTTDMEDPNWPLNKTYRPGFQTIRACVASVSVPPGCEEMVLDVYR 2294          
BLAST of mRNA_P-wetherbeei_contig9590.2.1 vs. uniprot
Match: A0A7S3A412_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A412_9RHOD)

HSP 1 Score: 79.3 bits (194), Expect = 5.560e-17
Identity = 35/70 (50.00%), Postives = 47/70 (67.14%), Query Frame = 1
Query:   19 GESLMRVAERAGVKIATSCRSGLCGTCTTDLEDPNWRTGSYRPGHQTIRACVAKCSVPKGCEEMVLDVYR 228
            G++LM++ +   +KI   CR+GLCG CT DLEDP     S+  G QTIRAC     VP GC+EMV+D++R
Sbjct:    2 GKNLMKLGDSVDIKIPRGCRTGLCGACTVDLEDP-----SFPDGIQTIRACQTNVQVPPGCDEMVIDLHR 66          
BLAST of mRNA_P-wetherbeei_contig9590.2.1 vs. uniprot
Match: A0A7S3A5G6_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A5G6_9RHOD)

HSP 1 Score: 79.3 bits (194), Expect = 1.800e-16
Identity = 35/70 (50.00%), Postives = 47/70 (67.14%), Query Frame = 1
Query:   19 GESLMRVAERAGVKIATSCRSGLCGTCTTDLEDPNWRTGSYRPGHQTIRACVAKCSVPKGCEEMVLDVYR 228
            G++LM++ +   +KI   CR+GLCG CT DLEDP     S+  G QTIRAC     VP GC+EMV+D++R
Sbjct:  125 GKNLMKLGDSVDIKIPRGCRTGLCGACTVDLEDP-----SFPDGIQTIRACQTNVQVPPGCDEMVIDLHR 189          
BLAST of mRNA_P-wetherbeei_contig9590.2.1 vs. uniprot
Match: A0A7S0HU56_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HU56_9CRYP)

HSP 1 Score: 78.6 bits (192), Expect = 6.290e-16
Identity = 34/77 (44.16%), Postives = 53/77 (68.83%), Query Frame = 1
Query:    1 VEVAKPGESLMRVAERAGVKIATSCRSGLCGTCTTDLEDPNWRTGSYRPGHQTI-RACVAKCSVPKGCEEMVLDVYR 228
            +  AKPG+ L+ V +  G+ +   C++GLCG+CT D+EDP++      PG ++I RAC  K ++P GC+E+V+DVYR
Sbjct:  109 IAAAKPGDVLLAVGDSVGISLPRGCQTGLCGSCTCDVEDPSF------PGSRSIARACCTKVALPDGCDELVVDVYR 179          
BLAST of mRNA_P-wetherbeei_contig9590.2.1 vs. uniprot
Match: A0A7S0VGG1_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VGG1_9CRYP)

HSP 1 Score: 78.2 bits (191), Expect = 1.130e-15
Identity = 37/77 (48.05%), Postives = 51/77 (66.23%), Query Frame = 1
Query:    1 VEVAKPGESLMRVAERAGVKIATSCRSGLCGTCTTDLEDPNWRTGSYRPGHQ-TIRACVAKCSVPKGCEEMVLDVYR 228
            +  A+ GE LM+VA+  GV I   C +GLCG CT+D+EDP +      PG + T+RAC  +  +P+GCEEMV+D YR
Sbjct:  127 IAAAQEGEVLMQVADSVGVDIPRGCMTGLCGACTSDIEDPAF------PGQRSTLRACSTRVVLPEGCEEMVIDCYR 197          
BLAST of mRNA_P-wetherbeei_contig9590.2.1 vs. uniprot
Match: A0A1X6NQW1_PORUM (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NQW1_PORUM)

HSP 1 Score: 78.2 bits (191), Expect = 1.930e-15
Identity = 39/83 (46.99%), Postives = 49/83 (59.04%), Query Frame = 1
Query:    7 VAKPGESLMRVAERAGVKIATSCRSGLCGTCTTDLEDPNW---------RTGSYRPGHQTIRACVAKCSVPKGCEEMVLDVYR 228
            VA PGE L+ V +  G+ I  SC SGLCG+CT +L+DP+W              RPG QTIRAC  +  +  GC EMV+DV R
Sbjct:  138 VANPGERLLSVGDGVGLTIPRSCVSGLCGSCTCELQDPSWVPEDDDAXXXXXGGRPGWQTIRACSTEVMLLDGCTEMVVDVVR 220          
BLAST of mRNA_P-wetherbeei_contig9590.2.1 vs. uniprot
Match: A0A7S1EMM1_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EMM1_HEMAN)

HSP 1 Score: 77.4 bits (189), Expect = 2.400e-15
Identity = 37/77 (48.05%), Postives = 50/77 (64.94%), Query Frame = 1
Query:    1 VEVAKPGESLMRVAERAGVKIATSCRSGLCGTCTTDLEDPNWRTGSYRPGHQTI-RACVAKCSVPKGCEEMVLDVYR 228
            +  AK GE LM VA+  GV +   C +GLCG+CT DLEDP +      PG +++ RAC  +  +P+GCEEMV+D YR
Sbjct:  135 IAAAKEGEVLMAVADSVGVDLPRGCMTGLCGSCTCDLEDPAF------PGERSVLRACSTRVVLPEGCEEMVIDCYR 205          
BLAST of mRNA_P-wetherbeei_contig9590.2.1 vs. uniprot
Match: L1K278_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K278_GUITC)

HSP 1 Score: 78.6 bits (192), Expect = 2.790e-15
Identity = 33/77 (42.86%), Postives = 53/77 (68.83%), Query Frame = 1
Query:    1 VEVAKPGESLMRVAERAGVKIATSCRSGLCGTCTTDLEDPNWRTGSYRPGHQTI-RACVAKCSVPKGCEEMVLDVYR 228
            +  A PG+ L+ V +  G+ +   C++GLCG+CT D+EDP++      PG +++ RAC  K S+P+GC+E+V+DVYR
Sbjct:   78 IAAANPGDVLLAVGDSVGISLPRGCQTGLCGSCTCDIEDPSF------PGSRSVARACCTKVSLPEGCDELVVDVYR 148          
BLAST of mRNA_P-wetherbeei_contig9590.2.1 vs. uniprot
Match: D8LM70_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM70_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 4.800e-15
Identity = 36/55 (65.45%), Postives = 43/55 (78.18%), Query Frame = 1
Query:   10 AKPGESLMRVAERAGVKIATSCRSGLCGTCTTDLEDPNWRTGSYRPGHQTIRACV 174
            A PGE + +VA+R GVKIAT+C SG+CGTC TDLED N +  SYRPG Q +RACV
Sbjct:   56 AYPGEIVTKVAKRCGVKIATACNSGICGTCMTDLEDANGK--SYRPGFQVVRACV 108          
BLAST of mRNA_P-wetherbeei_contig9590.2.1 vs. uniprot
Match: M2XPV2_GALSU (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XPV2_GALSU)

HSP 1 Score: 70.9 bits (172), Expect = 6.080e-13
Identity = 35/75 (46.67%), Postives = 45/75 (60.00%), Query Frame = 1
Query:    1 VEVAKPGESLMRVAERAGVKIATSCRSGLCGTCTTDLEDPNWRTGSYRPGHQTIRACVAKCSVPKGCEEMVLDVY 225
            V  AKP E+LM VA+  G+KI   C +G+CGTCT +LED      S   G   IR C     +P GC+EMV+DV+
Sbjct:  118 VVAAKPSENLMDVADSVGLKIPRYCETGVCGTCTAELEDL-----SSVDGRVAIRPCCTDVHLPTGCDEMVVDVF 187          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9590.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YHE6_9STRA2.800e-3077.032Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A7S3A412_9RHOD5.560e-1750.00Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S3A5G6_9RHOD1.800e-1650.00Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A7S0HU56_9CRYP6.290e-1644.16Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S0VGG1_9CRYP1.130e-1548.05Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A1X6NQW1_PORUM1.930e-1546.992Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A7S1EMM1_HEMAN2.400e-1548.05Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
L1K278_GUITC2.790e-1542.86Uncharacterized protein (Fragment) n=1 Tax=Guillar... [more]
D8LM70_ECTSI4.800e-1565.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
M2XPV2_GALSU6.080e-1346.672Fe-2S ferredoxin-type domain-containing protein n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9590contigP-wetherbeei_contig9590:1082..1707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LM70
PFAMsFer2
Model size228
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.99e-14
EggNOG OGs2EYCC@1|root,2SZW3@2759|Eukaryota
Description2Fe-2S iron-sulfur cluster binding domain
Cds size198
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187100.7682276-CDS-P-wetherbeei_contig9590:1081..12271683187100.7682276-CDS-P-wetherbeei_contig9590:1081..1227Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9590 1082..1227 -
1683187100.7798135-CDS-P-wetherbeei_contig9590:1625..16771683187100.7798135-CDS-P-wetherbeei_contig9590:1625..1677Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9590 1626..1677 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187100.7896848-UTR-P-wetherbeei_contig9590:1677..17071683187100.7896848-UTR-P-wetherbeei_contig9590:1677..1707Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9590 1678..1707 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9590.2.1prot_P-wetherbeei_contig9590.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9590 1082..1677 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9590.2.1

>prot_P-wetherbeei_contig9590.2.1 ID=prot_P-wetherbeei_contig9590.2.1|Name=mRNA_P-wetherbeei_contig9590.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=66bp
MRVAERAGVKIATSCRSGLCGTCTTDLEDPNWRTGSYRPGHQTIRACVAK
CSVPKGCEEMVLDVYR
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mRNA from alignment at P-wetherbeei_contig9590:1082..1707-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9590.2.1 ID=mRNA_P-wetherbeei_contig9590.2.1|Name=mRNA_P-wetherbeei_contig9590.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=626bp|location=Sequence derived from alignment at P-wetherbeei_contig9590:1082..1707- (Phaeothamnion wetherbeei SAG_119_79)
GTCGAAGTCGCCAAGCCCGGAGAATCGCTGATGCGTGTGGCTGAGCGCGC TGGTGTTAAGATCGCTACGTCGTGTCGTTCGGGTGAGTGACTTCGGCCCA CAAAATGGATTGAACGCATTAAAAGGCGCACAACTTTTTCCTTCAATGCT GCTGCTGCGTTTGATGAGCGTTGCCGGATGATGTTAAAGACTTTATACCC CTCTATTGGCCGTTTTAACCTTTGCATGTATACTCTCTATAATGATCCGT CCAGTATCGAAGATTAACTGTTGAGAGCCGAAAAGATGCCGAATTTCTTG TTTTCCTACCATGCCAGAGCTCGACTTTAGAACTCTGGGTACCTCCCCCG TCAATTTAGACTCTCTAGCTGCCTTGAGGACCGCGTCTTATTCTACGGGA ACTTGTAATCACTCCCGTCGTTGCCTCTCCTCCGTGTTCTCCTCCGCCGC CGCCTTCTGTCTCTCTCCTGTTGTCGCCAGGGCTGTGCGGCACGTGCACG ACCGATTTAGAGGACCCGAACTGGCGGACCGGCTCGTACCGTCCTGGCCA CCAAACCATCCGTGCCTGCGTTGCCAAGTGTTCCGTGCCGAAGGGCTGCG AGGAGATGGTCCTCGACGTCTACCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9590:1082..1707-

>mRNA_P-wetherbeei_contig9590.2.1 ID=mRNA_P-wetherbeei_contig9590.2.1|Name=mRNA_P-wetherbeei_contig9590.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=198bp|location=Sequence derived from alignment at P-wetherbeei_contig9590:1082..1707- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTGTGGCTGAGCGCGCTGGTGTTAAGATCGCTACGTCGTGTCGTTC
GGGGCTGTGCGGCACGTGCACGACCGATTTAGAGGACCCGAACTGGCGGA
CCGGCTCGTACCGTCCTGGCCACCAAACCATCCGTGCCTGCGTTGCCAAG
TGTTCCGTGCCGAAGGGCTGCGAGGAGATGGTCCTCGACGTCTACCGC
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