mRNA_P-wetherbeei_contig9587.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9587.1.1
Unique NamemRNA_P-wetherbeei_contig9587.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig9587.1.1 vs. uniprot
Match: A0A836C8L6_9STRA (Sm-like protein LSm7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8L6_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.720e-45
Identity = 79/99 (79.80%), Postives = 87/99 (87.88%), Query Frame = 1 
Query:  244 MAERKPKETVLDLTKYLDQAVCVKFVGGREVSGVLKGFDQLVNLVLDESTESIRDPSDPYKMTDEKRHLGLVVCRGTQVSLISPVEGVEEIENPFLAQQ 540
            MAERK KE VLDLTKYLDQ V VKF GGREVSGVLKG+DQLVNLVLD+  E IRDPSDPY++TDE R LGLVVCRGTQVSLISP++G+EEI NPFLA +
Sbjct:    1 MAERK-KENVLDLTKYLDQGVRVKFQGGREVSGVLKGYDQLVNLVLDDCVEFIRDPSDPYRVTDETRTLGLVVCRGTQVSLISPMDGMEEIANPFLAAE 98
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BLAST of mRNA_P-wetherbeei_contig9587.1.1 vs. uniprot
Match: A0A4D9CX90_9STRA (Sm domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CX90_9STRA)

HSP 1 Score: 152 bits (384), Expect = 1.680e-44
Identity = 69/94 (73.40%), Postives = 84/94 (89.36%), Query Frame = 1 
Query:  262 KETVLDLTKYLDQAVCVKFVGGREVSGVLKGFDQLVNLVLDESTESIRDPSDPYKMTDEKRHLGLVVCRGTQVSLISPVEGVEEIENPFLAQQE 543
            K+TVLDL KYLD+AVCV+F GGREV+G+L+GFDQL+NLVLDES E++RDP DPY++TDE R LGLV+CRGTQVSLISPVEG EEI NPF+  ++
Sbjct:   10 KDTVLDLNKYLDKAVCVRFQGGREVTGILRGFDQLINLVLDESKETLRDPLDPYRLTDETRELGLVICRGTQVSLISPVEGTEEIANPFIQAED 103
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BLAST of mRNA_P-wetherbeei_contig9587.1.1 vs. uniprot
Match: A0A7S2BSU7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSU7_9STRA)

HSP 1 Score: 148 bits (373), Expect = 1.000e-42
Identity = 69/94 (73.40%), Postives = 81/94 (86.17%), Query Frame = 1 
Query:  262 KETVLDLTKYLDQAVCVKFVGGREVSGVLKGFDQLVNLVLDESTESIRDPSDPYKMTDEKRHLGLVVCRGTQVSLISPVEGVEEIENPFLAQQE 543
            KE++LD+ KY+DQ V VKF GGREV+G LKGFDQLVNLVLD+ TE +RDP DPY++TDE R LG+VVCRGTQVSLISPV+G EEI NPF+AQ E
Sbjct:   18 KESILDINKYIDQGVRVKFQGGREVTGTLKGFDQLVNLVLDDCTEFLRDPEDPYRITDESRTLGMVVCRGTQVSLISPVDGTEEISNPFIAQTE 111
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BLAST of mRNA_P-wetherbeei_contig9587.1.1 vs. uniprot
Match: A0A7S2CML5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CML5_9STRA)

HSP 1 Score: 145 bits (367), Expect = 1.040e-41
Identity = 68/100 (68.00%), Postives = 83/100 (83.00%), Query Frame = 1 
Query:  244 MAERKPKETVLDLTKYLDQAVCVKFVGGREVSGVLKGFDQLVNLVLDESTESIRDPSDPYKMTDEKRHLGLVVCRGTQVSLISPVEGVEEIENPFLAQQE 543
            MA+   KE++LDL KY+DQ V VKF GGREV G+LKG+DQLVNLVLDE  E +RDP DPY++TD+ R LG+VVCRGTQVSLISP++G EEI NPF+A +E
Sbjct:   22 MAQASKKESILDLNKYVDQGVRVKFQGGREVQGILKGYDQLVNLVLDECVEYLRDPDDPYRITDDTRTLGMVVCRGTQVSLISPMDGTEEIANPFVAAEE 121
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BLAST of mRNA_P-wetherbeei_contig9587.1.1 vs. uniprot
Match: D8LPU6_ECTSI (Sm-like protein LSm7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPU6_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 1.170e-41
Identity = 74/101 (73.27%), Postives = 84/101 (83.17%), Query Frame = 1 
Query:  244 MAE--RKPKETVLDLTKYLDQAVCVKFVGGREVSGVLKGFDQLVNLVLDESTESIRDPSDPYKMTDEKRHLGLVVCRGTQVSLISPVEGVEEIENPFLAQQ 540
            MAE  +K +ETVLDL KYLDQ V VK  GGREV GVLKGFD LVN+VLDE  E IRDP+DPYK+T+E R LGLVVCRGTQVSLISP +G+EEIENPF+A +
Sbjct:    1 MAEVKKKERETVLDLQKYLDQGVRVKLQGGREVHGVLKGFDPLVNVVLDECIEFIRDPTDPYKLTEETRELGLVVCRGTQVSLISPRDGMEEIENPFMAPE 101
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BLAST of mRNA_P-wetherbeei_contig9587.1.1 vs. uniprot
Match: A0A7S2XWT1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWT1_9STRA)

HSP 1 Score: 144 bits (362), Expect = 3.420e-41
Identity = 73/104 (70.19%), Postives = 84/104 (80.77%), Query Frame = 1 
Query:  244 MAERKPKETVLDLTKYLDQAVCVKFVGGREVSGVLKGFDQLVNLVLDESTESIRDPSDPYKMTDEKRHLGLVVCRGTQVSLISPVEGVEEIENPFLAQQEGDEG 555
            MA    +E VLDL KY+DQ V VKF GGREV G+LKGFDQLVNLVLDE+ E +RDP DPY++T+E R LGLVVCRG QVSLISPV+G+EEI NPFL Q E +EG
Sbjct:    1 MATGGKRENVLDLNKYVDQGVRVKFQGGREVHGILKGFDQLVNLVLDETVEFLRDPDDPYRITNETRTLGLVVCRGPQVSLISPVDGMEEIANPFL-QMEEEEG 103
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BLAST of mRNA_P-wetherbeei_contig9587.1.1 vs. uniprot
Match: A0A7I8VD05_9ANNE (DgyrCDS1623 n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8VD05_9ANNE)

HSP 1 Score: 141 bits (356), Expect = 3.650e-40
Identity = 70/108 (64.81%), Postives = 82/108 (75.93%), Query Frame = 1 
Query:  217 SAKKRARDTMAERKPKETVLDLTKYLDQAVCVKFVGGREVSGVLKGFDQLVNLVLDESTESIRDPSDPYKMTDEKRHLGLVVCRGTQVSLISPVEGVEEIENPFLAQQ 540
            S K+      AERK KET+LDL KYLD+ + VKF GGRE SGVLKGFD L+NLVLD +TE +RDP DPYK+T++ R LGL VCRGT V LI P EG+E I NPFLAQ+
Sbjct:    2 SQKQETSGDKAERKRKETILDLGKYLDKIIRVKFAGGREASGVLKGFDPLLNLVLDGTTEHLRDPDDPYKITNDTRQLGLTVCRGTAVLLICPAEGMESIANPFLAQE 109
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BLAST of mRNA_P-wetherbeei_contig9587.1.1 vs. uniprot
Match: A0A7S2ST35_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2ST35_9STRA)

HSP 1 Score: 140 bits (353), Expect = 7.000e-40
Identity = 66/94 (70.21%), Postives = 80/94 (85.11%), Query Frame = 1 
Query:  262 KETVLDLTKYLDQAVCVKFVGGREVSGVLKGFDQLVNLVLDESTESIRDPSDPYKMTDEKRHLGLVVCRGTQVSLISPVEGVEEIENPFLAQQE 543
            KE++LDL KY+DQ V VKF GGREV GVLKG+DQLVNLVLDE+ E +RDP DPY++T++ R LG+VVCRGTQVSLISP++G EEI NPFL  +E
Sbjct:    6 KESILDLGKYIDQGVRVKFQGGREVHGVLKGYDQLVNLVLDEAVEYLRDPEDPYRITEQTRTLGMVVCRGTQVSLISPMDGTEEIANPFLQVEE 99
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BLAST of mRNA_P-wetherbeei_contig9587.1.1 vs. uniprot
Match: A0A6A4WL24_AMPAM (U6 snRNA-associated Sm-like protein LSm7 n=3 Tax=Thoracicalcarea TaxID=2899756 RepID=A0A6A4WL24_AMPAM)

HSP 1 Score: 140 bits (352), Expect = 1.390e-39
Identity = 67/99 (67.68%), Postives = 82/99 (82.83%), Query Frame = 1 
Query:  250 ERKPKETVLDLTKYLDQAVCVKFVGGREVSGVLKGFDQLVNLVLDESTESIRDPSDPYKMTDEKRHLGLVVCRGTQVSLISPVEGVEEIENPFLAQQEG 546
            ERK KE++LDL+KYLD+ + VKF GGRE SG+LKGFDQL+NLVLD +TE +RDP DPY++TD+ R LGLVVCRGT V LI P +G+E I NPF+ QQEG
Sbjct:   13 ERKKKESILDLSKYLDKPIRVKFSGGRESSGILKGFDQLLNLVLDNTTEHLRDPDDPYRLTDDTRQLGLVVCRGTAVVLICPADGMEAIPNPFV-QQEG 110
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BLAST of mRNA_P-wetherbeei_contig9587.1.1 vs. uniprot
Match: A0A7S4MV69_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4MV69_9EUKA)

HSP 1 Score: 138 bits (348), Expect = 8.560e-39
Identity = 64/102 (62.75%), Postives = 82/102 (80.39%), Query Frame = 1 
Query:  247 AERKPKETVLDLTKYLDQAVCVKFVGGREVSGVLKGFDQLVNLVLDESTESIRDPSDPYKMTDEKRHLGLVVCRGTQVSLISPVEGVEEIENPFLAQQEGDE 552
            A+ K K+TVLD++KYLDQ+V VKF+GGREV GVLKG+D L+NLVLDE+ E ++DP DPY++ DE R LGL VCRGT V L+ P +G EEI NPFL ++ G+E
Sbjct:   20 AQDKKKQTVLDMSKYLDQSVRVKFMGGREVVGVLKGYDALLNLVLDETQEYLKDPDDPYRLLDETRTLGLTVCRGTSVMLVCPTDGFEEIANPFLGEEGGEE 121
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9587.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C8L6_9STRA1.720e-4579.80Sm-like protein LSm7 n=1 Tax=Tribonema minus TaxID... [more]
A0A4D9CX90_9STRA1.680e-4473.40Sm domain-containing protein n=1 Tax=Nannochlorops... [more]
A0A7S2BSU7_9STRA1.000e-4273.40Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2CML5_9STRA1.040e-4168.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
D8LPU6_ECTSI1.170e-4173.27Sm-like protein LSm7 n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A7S2XWT1_9STRA3.420e-4170.19Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7I8VD05_9ANNE3.650e-4064.81DgyrCDS1623 n=1 Tax=Dimorphilus gyrociliatus TaxID... [more]
A0A7S2ST35_9STRA7.000e-4070.21Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6A4WL24_AMPAM1.390e-3967.68U6 snRNA-associated Sm-like protein LSm7 n=3 Tax=T... [more]
A0A7S4MV69_9EUKA8.560e-3962.75Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9587contigP-wetherbeei_contig9587:8..756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LPU6
Preferred nameLSM7
PFAMsLSM
Model size589
Max annot lvl2759|Eukaryota
KEGG koko:K12626,ko:K16353
KEGG Pathwayko03018,ko03040,map03018,map03040
KEGG ModuleM00354,M00396,M00397
Hectar predicted targeting categoryother localisation
GOsGO:0000288,GO:0000291,GO:0000375,GO:0000377,GO:0000398,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005688,GO:0005689,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008380,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0017069,GO:0017070,GO:0019222,GO:0019439,GO:0022613,GO:0030490,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046540,GO:0046700,GO:0046982,GO:0046983,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0070013,GO:0071004,GO:0071010,GO:0071013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:0120115,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1990726,GO:1990904
Exons2
Evalue2.37e-44
EggNOG OGsKOG1781@1|root,KOG1781@2759|Eukaryota
Ec32 ortholog descriptionSm-like protein LSm7
Ec32 orthologEc-18_002540.1
Descriptionnuclear-transcribed mRNA catabolic process
Cds size318
COG categoryJ
BRITEko00000,ko00001,ko00002,ko03019,ko03041,ko04516
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187100.4192965-UTR-P-wetherbeei_contig9587:7..2501683187100.4192965-UTR-P-wetherbeei_contig9587:7..250Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9587 8..250 +
1683187100.4465606-UTR-P-wetherbeei_contig9587:728..7561683187100.4465606-UTR-P-wetherbeei_contig9587:728..756Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9587 729..756 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187100.4300032-CDS-P-wetherbeei_contig9587:250..4131683187100.4300032-CDS-P-wetherbeei_contig9587:250..413Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9587 251..413 +
1683187100.438151-CDS-P-wetherbeei_contig9587:573..7281683187100.438151-CDS-P-wetherbeei_contig9587:573..728Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9587 574..728 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9587.1.1prot_P-wetherbeei_contig9587.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9587 251..728 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9587.1.1

>prot_P-wetherbeei_contig9587.1.1 ID=prot_P-wetherbeei_contig9587.1.1|Name=mRNA_P-wetherbeei_contig9587.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=106bp
MAERKPKETVLDLTKYLDQAVCVKFVGGREVSGVLKGFDQLVNLVLDEST
ESIRDPSDPYKMTDEKRHLGLVVCRGTQVSLISPVEGVEEIENPFLAQQE
GDEGT*
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mRNA from alignment at P-wetherbeei_contig9587:8..756+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9587.1.1 ID=mRNA_P-wetherbeei_contig9587.1.1|Name=mRNA_P-wetherbeei_contig9587.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=749bp|location=Sequence derived from alignment at P-wetherbeei_contig9587:8..756+ (Phaeothamnion wetherbeei SAG_119_79)
TTCTACTCCTCCAGTACCCTGTCACAGCTTCCTTGCTGTGGTGGCGGCGC
CCCCCAACGTTTCTTTGCGCGCGAGAAATCCGTGAGCCAAAGATTTCCGT
GAAGTCGTTACGTCCACTGTAGCAATCCACAAAGAAAGGCAGGGCGTGAG
TCCGCCACCGGCGGTAGGGTAGAACTGCGTTCTGTCATTGCTTTAAAATT
CTGCCGCGTGCTCTGTTCAGCAAAGAAGAGGGCGAGAGATACGATGGCGG
AGCGCAAGCCTAAGGAGACGGTGCTCGACCTCACGAAATATCTCGATCAA
GCGGTGTGCGTAAAGTTCGTCGGCGGGCGAGAAGTTAGCGGCGTCCTCAA
GGGGTTCGATCAACTCGTCAACCTCGTCTTGGACGAGAGCACCGAGTCGA
TCCGGGGTTAGTAGACGAGCTCGACCGTATTCCCCCCTTTCTTTCCGTTA
TAGAAGGCGCTCATCTGAGGTGCTGACTTGGTCTTCGAAGCACAAATTGA
CACTGTCTAACTTGCCCTTACACCACCTCCGCGTTTTATCCTTCTCCTGG
CGCGTTCGTCGCGCAGATCCAAGCGATCCCTACAAGATGACGGACGAAAA
GCGACATCTGGGATTGGTGGTTTGCCGAGGCACGCAAGTCAGTCTCATCA
GCCCTGTCGAAGGAGTGGAAGAGATTGAAAACCCTTTCCTCGCACAGCAA
GAAGGAGATGAGGGAACATGATAATTGATTAGCGCTTGTGCTCGCCTCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9587:8..756+

>mRNA_P-wetherbeei_contig9587.1.1 ID=mRNA_P-wetherbeei_contig9587.1.1|Name=mRNA_P-wetherbeei_contig9587.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=318bp|location=Sequence derived from alignment at P-wetherbeei_contig9587:8..756+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGAGCGCAAGCCTAAGGAGACGGTGCTCGACCTCACGAAATATCT
CGATCAAGCGGTGTGCGTAAAGTTCGTCGGCGGGCGAGAAGTTAGCGGCG
TCCTCAAGGGGTTCGATCAACTCGTCAACCTCGTCTTGGACGAGAGCACC
GAGTCGATCCGGGATCCAAGCGATCCCTACAAGATGACGGACGAAAAGCG
ACATCTGGGATTGGTGGTTTGCCGAGGCACGCAAGTCAGTCTCATCAGCC
CTGTCGAAGGAGTGGAAGAGATTGAAAACCCTTTCCTCGCACAGCAAGAA
GGAGATGAGGGAACATGA
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