mRNA_P-wetherbeei_contig9584.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9584.5.1
Unique NamemRNA_P-wetherbeei_contig9584.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9584.5.1 vs. uniprot
Match: Q3BKI1_9PROT (Uncharacterized protein n=2 Tax=Magnetospirillum gryphiswaldense TaxID=55518 RepID=Q3BKI1_9PROT)

HSP 1 Score: 145 bits (366), Expect = 6.940e-39
Identity = 96/197 (48.73%), Postives = 104/197 (52.79%), Query Frame = 1
Query:    1 PQVIGVFFNRHPFGPPVSVTSPSTCSWLDH*VSGLIQRTWRPIKTRFRYAYTYRFKLAR*IKSLAHNTKGTMSPRTYLGLHLFVGVRFQVYFTPLVGVLFTFPSRYWFTIGR*GVLRLGGWSPHVQTGFHVSRLTRASMFALLVRGYHPLRLCFPDRFQLSHIDDWPGPRSLATTSGVSVDVLSSGYLDVSVPRVCL 591
            PQ+I  FFNR  FGPPV VT PSTC W+DH VSGL+  T RPI+TRFR AYTYR KLA    SL H TKGT SP           V   V   PL G    FP            L L    P  +  F    L +A        G  P       RF+L     WPGPRSLATT+GVSVDVLSSGYLDVSV  V L
Sbjct:    7 PQIIPDFFNRRGFGPPVGVTPPSTCPWIDHSVSGLMHATRRPIQTRFRCAYTYRLKLAAYTNSLTHYTKGTPSPFKRAPTACRHSVSGTVSL-PLSGCFSPFPHGTSSLSVTEEYLGLEDGPPMFRQDFTCPALLKADT-RFTPTGLSPAMARLSRRFRLCKYQHWPGPRSLATTNGVSVDVLSSGYLDVSVRPVRL 201          
BLAST of mRNA_P-wetherbeei_contig9584.5.1 vs. uniprot
Match: A0A0A7RQ73_9THEM (Uncharacterized protein n=1 Tax=Thermotoga sp. TBYP3.1.4.1 TaxID=1587550 RepID=A0A0A7RQ73_9THEM)

HSP 1 Score: 140 bits (352), Expect = 2.900e-36
Identity = 116/294 (39.46%), Postives = 141/294 (47.96%), Query Frame = 1
Query:    1 PQVIGVFFNRHPFGPPVSVTSPSTCSWLDH*VSGLIQRTWRPIKTRFRYAYTYRFKLAR*IKSLAHNTKGTMSPRTYL----GLHLFVGVRFQVYFTPLVGVLFTFPSRYWFTIGR*GVLRLGGWSPHVQTGFHVSRLTRA------SMFALLVRGYHPLRLCFPDRFQLSHIDDWPGPRSL--------ATTSGVSVDVLSS---GYLDVSVPRV----CLKPPMYSEISYLHLITENPNPRFGYRR-------WVSPFGNLWIKAPSQLPTAYRSVARPSSPLIAKASTEHP 786
            PQVI   F  H FGPPV    PS C  + H  SGL   T RP++TRFR  Y +       + S    T+G ++ +       GL L VG RFQV F    GVLFTFPSRYW TIGR  V  LGGWSP + TGFHVSR TR       S FA     Y  + L  P    +   + +  PR +        AT +      L+    G L V  P +     +  P  +E+ +       P  R  +RR        VSPFGN  I A  +LP AYRS+ RPSSP  AKAST  P
Sbjct:   33 PQVIRGLFTVHRFGPPVGFNPPSPCPGVAHPASGLPPVTERPVRTRFRCGYAFIG-----LTSPPTATRGLINQKARRHPKWGLRLLVGTRFQVLFHSPSGVLFTFPSRYWCTIGRRVVFSLGGWSPQLPTGFHVSRGTREHGPGSPSPFA-----YGAVTLSGPPSQVVRLEEGFVTPRRVRGLARPCPATPAWQRPRALTPRWFGLLPVRSPLLGESRLISFPRGTEMFHF------PRYRTAFRRRVASTATQVSPFGNPGINACLRLPRAYRSLPRPSSPPAAKASTACP 310          
BLAST of mRNA_P-wetherbeei_contig9584.5.1 vs. uniprot
Match: C9YEF0_CURXX (Uncharacterized protein n=2 Tax=cellular organisms TaxID=131567 RepID=C9YEF0_CURXX)

HSP 1 Score: 132 bits (332), Expect = 6.350e-35
Identity = 84/174 (48.28%), Postives = 100/174 (57.47%), Query Frame = 2
Query:  281 PSSGCFSPFPHGTGSLSVDEEYLGLEGGPPMFRQDFTCPALL-----EHQCLHYLYGAITL*GSAFLTDSNCLTLMTGLVRVRSPLLAESRLMSFPPGT*MFQFPGFA*NLLCIQRFHTFT**PKIQTHVSAIEGGFPHSEICGSKLLRSSPQLIAA*HVLRRLSSPRHPPNTL 787
            P  G FSPFPHGT SLSV++EYL LE GPP+FRQDF+CPALL      H+  H + G   L  +          +   L+R RSPLL+ESRLMSFP  T MFQF  FA         + F     I  ++S    GFP  +     L  SSP+LIA  HVLRRLS PRHPP+ L
Sbjct:    5 PLPGFFSPFPHGTSSLSVNDEYLALEDGPPIFRQDFSCPALLFASSVPHRSFH-VRGYHPLWPAFPGCSVMSCAITCRLLRFRSPLLSESRLMSFPRATEMFQFTRFA------SHDYVF-----IMRYLSV---GFPIRKSPDQSLFASSPKLIAGYHVLRRLSLPRHPPHAL 163          
BLAST of mRNA_P-wetherbeei_contig9584.5.1 vs. uniprot
Match: A0A132GPZ6_9BACT (Uncharacterized protein n=2 Tax=bacterium P201 TaxID=1768112 RepID=A0A132GPZ6_9BACT)

HSP 1 Score: 130 bits (328), Expect = 5.980e-33
Identity = 102/255 (40.00%), Postives = 126/255 (49.41%), Query Frame = 2
Query:  110 NELGALLRLAFATPTPIGLSLLVKLS----------RWPIIQKVRCHPERILGSICL*-VSGFRSISLPSSGCFSPFPHGTGSLSVDEEYLGLEGGPPMFRQDFTCPALLE-------------HQC-LHYLYGAITL*GSAFLTDSNCLTL---MTGLVRVRSPLLAESRLMSFPPGT*MFQFPGFA*NLLCIQRFHTFT**PKIQTHVSAIE-GGFPHSEICGSKLLRSSPQLIAA*HVLRRLSSPRHPPNTL 787
              LG     A++T +   LSL +  S          R  I+QK R H E++  + C   VSG  ++SLP  GCFSPFPHGT SLSV  EYL L  GP  F QD++CPALL              H   L++   +I   G+   +      L     GL+  RSPLL ES L S P GT MFQFP FA                  Q  ++A++  G  HSEI GS+ + S P LIAA HVL RL  PRHPP  L
Sbjct:   47 RSLGFASAPAYSTASSASLSLRLGASSPLTSHAMATRRFIMQKARRHHEKMAPTACRRMVSG--TLSLPYYGCFSPFPHGTRSLSVSREYLALPDGPGGFAQDYSCPALLRIPKGPIPVHIRDSHPLWLNFPEHSIPGQGTKSWSYYPACALPHKRFGLLPGRSPLLGESLLFSSPGGTKMFQFPPFA---------------SVTQLRIAALQTAGLSHSEIAGSRDICSYPALIAACHVLHRLREPRHPPCAL 284          
BLAST of mRNA_P-wetherbeei_contig9584.5.1 vs. uniprot
Match: H6SIC8_PARPM (Uncharacterized protein (Fragment) n=1 Tax=Pararhodospirillum photometricum DSM 122 TaxID=1150469 RepID=H6SIC8_PARPM)

HSP 1 Score: 120 bits (301), Expect = 5.720e-31
Identity = 65/92 (70.65%), Postives = 68/92 (73.91%), Query Frame = 1
Query:    1 PQVIGVFFNRHPFGPPVSVTSPSTCSWLDH*VSGLIQRTWRPIKTRFRYAYTYRFKLAR*IKSLAHNTKGTMSPRTYLGLHLFVGVRFQVYF 276
            PQVI VFFNR  FGPPV VT PSTC WLDH VSGLI+RT RP+KTRFR A TYR KLAR IKSL H TKGT SP   L   L VG+RFQ  F
Sbjct:    1 PQVIPVFFNRRGFGPPVGVTPPSTCPWLDHPVSGLIRRTRRPLKTRFRCASTYRLKLARQIKSLTHYTKGTPSPPKEL--RLLVGIRFQELF 90          
BLAST of mRNA_P-wetherbeei_contig9584.5.1 vs. uniprot
Match: A0A7G3B477_LUTLO (Uncharacterized protein n=1 Tax=Lutzomyia longipalpis TaxID=7200 RepID=A0A7G3B477_LUTLO)

HSP 1 Score: 117 bits (293), Expect = 2.800e-30
Identity = 56/74 (75.68%), Postives = 61/74 (82.43%), Query Frame = 1
Query:  340 GVLRLGGWSPHVQTGFHVSRLTRASMFALLVRGYHPLRLCFPDRFQLSHIDDWPGPRSLATTSGVSVDVLSSGY 561
            GVLRLGGWSP VQTG HVSRLTR  + ALLVRGYHPLR  FPD F+LS +  WPGPRSLATT+G+SVDV SS Y
Sbjct:    1 GVLRLGGWSPRVQTGLHVSRLTRGYIIALLVRGYHPLRPSFPDWFRLSLMYHWPGPRSLATTNGISVDVFSSSY 74          
BLAST of mRNA_P-wetherbeei_contig9584.5.1 vs. uniprot
Match: Q1YII1_AURMS (Uncharacterized protein n=1 Tax=Aurantimonas manganoxydans (strain ATCC BAA-1229 / DSM 21871 / SI85-9A1) TaxID=287752 RepID=Q1YII1_AURMS)

HSP 1 Score: 117 bits (292), Expect = 8.360e-30
Identity = 58/74 (78.38%), Postives = 63/74 (85.14%), Query Frame = 1
Query:   55 VTSPSTCSWLDH*VSGLIQRTWRPIKTRFRYAYTYRFKLAR*IKSLAHNTKGTMSPRTYLGLHLFVGVRFQVYF 276
            VT+PSTCSWLDH VSGLI+RT RP++TRFRYA TYR KLAR  KSL H TKGTMSPRT L LHLFVG+RFQV F
Sbjct:    3 VTAPSTCSWLDHSVSGLIRRTERPVQTRFRYASTYRLKLARQTKSLTHYTKGTMSPRTNLELHLFVGIRFQVLF 76          
BLAST of mRNA_P-wetherbeei_contig9584.5.1 vs. uniprot
Match: A0A6A5L1U4_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L1U4_LUPAL)

HSP 1 Score: 127 bits (318), Expect = 1.610e-29
Identity = 77/154 (50.00%), Postives = 82/154 (53.25%), Query Frame = 1
Query:    1 PQVIGVFFNRHPFGPPVSVTSPSTCSWLDH*VSGLIQRTWRPIKTRFRYAYTYRFKLAR*IKSLAHNTKGTMSPRTYLGLHLFVGVRFQVYFTPLVGVLFTFPSRYWFTIGR*GVLRLGGWSPHVQTGFHVSRLTRASMFALLVRGYHPLRLCF 462
            P VI   FN H FGPPV VT PS+C+WLDH VSGL  RT RP++TRFR A TYR KLAR  KSL H TKGT SPRT LGL LFV +RFQ                                     TGFHVSR TR       VRG HP R  F
Sbjct:  442 PHVIQDLFNGHWFGPPVGVTPPSSCTWLDHSVSGLKPRTERPVQTRFRCASTYRLKLARNFKSLTHYTKGTRSPRTNLGLPLFVSIRFQ-------------------------------------TGFHVSRPTRVLALNRPVRGCHPSRRPF 558          
BLAST of mRNA_P-wetherbeei_contig9584.5.1 vs. uniprot
Match: E0XW25_9PROT (Uncharacterized protein n=1 Tax=uncultured Rhodospirillales bacterium HF4000_24M03 TaxID=710788 RepID=E0XW25_9PROT)

HSP 1 Score: 112 bits (279), Expect = 5.440e-28
Identity = 58/90 (64.44%), Postives = 60/90 (66.67%), Query Frame = 1
Query:  292 VLFTFPSRYWFTIGR*GVLRLGGWSPHVQTGFHVSRLTRASMFALLVRGYHPLRLCFPDRFQLSHIDDWPGPRSLATTSGVSVDVLSSGY 561
            +LFTFPSRYW+TIGR GVLRLGGWSPHVQTGFHVSR TR         G  P        F L     WPGPRSLA T GVSVDVLSS Y
Sbjct:    1 MLFTFPSRYWYTIGRQGVLRLGGWSPHVQTGFHVSRPTRVQQTTDTHTGLSPSMAGLSRPFWLIVCWRWPGPRSLAATDGVSVDVLSSSY 90          
BLAST of mRNA_P-wetherbeei_contig9584.5.1 vs. uniprot
Match: A0A0D1AAF3_STRSZ (Uncharacterized protein n=1 Tax=Streptococcus equi subsp. zooepidemicus Sz16 TaxID=1381085 RepID=A0A0D1AAF3_STRSZ)

HSP 1 Score: 113 bits (283), Expect = 7.620e-28
Identity = 63/112 (56.25%), Postives = 73/112 (65.18%), Query Frame = 1
Query:    1 PQVIGVFFNRHPFGPPVSVTSPSTCSWLDH*VSGLIQRTWRPIKTRFRYAYTYRFKLAR*IKSLAHNTKGTMSPRTYLGLHLFVGVRFQVYFTPLVGVLFTFPSRYWFTIGR 336
            PQVI   FN   FGPPV +T+PSTCSW+ H VSGL  RT+  ++  F  A + +  LAR   S  H+TKGT+SP    GL L VG RFQV F    GVLFTFPSRYWFTIG 
Sbjct:   40 PQVIQALFNVPWFGPPVRLTAPSTCSWVGHMVSGLRPRTYALLRLGFPSAPSLQLNLARKRNSPVHSTKGTLSPIN--GLELLVGTRFQVLFHSPPGVLFTFPSRYWFTIGH 149          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9584.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q3BKI1_9PROT6.940e-3948.73Uncharacterized protein n=2 Tax=Magnetospirillum g... [more]
A0A0A7RQ73_9THEM2.900e-3639.46Uncharacterized protein n=1 Tax=Thermotoga sp. TBY... [more]
C9YEF0_CURXX6.350e-3548.28Uncharacterized protein n=2 Tax=cellular organisms... [more]
A0A132GPZ6_9BACT5.980e-3340.00Uncharacterized protein n=2 Tax=bacterium P201 Tax... [more]
H6SIC8_PARPM5.720e-3170.65Uncharacterized protein (Fragment) n=1 Tax=Pararho... [more]
A0A7G3B477_LUTLO2.800e-3075.68Uncharacterized protein n=1 Tax=Lutzomyia longipal... [more]
Q1YII1_AURMS8.360e-3078.38Uncharacterized protein n=1 Tax=Aurantimonas manga... [more]
A0A6A5L1U4_LUPAL1.610e-2950.00Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
E0XW25_9PROT5.440e-2864.44Uncharacterized protein n=1 Tax=uncultured Rhodosp... [more]
A0A0D1AAF3_STRSZ7.620e-2856.25Uncharacterized protein n=1 Tax=Streptococcus equi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9584contigP-wetherbeei_contig9584:1486..2301 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1430440.MGMSRv2_1983
Model size789
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.17e-10
EggNOG OGs2DNPH@1|root,32YF1@2|Bacteria,1NARM@1224|Proteobacteria,2UJNP@28211|Alphaproteobacteria
Cds size375
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187100.1927056-CDS-P-wetherbeei_contig9584:1485..16211683187100.1927056-CDS-P-wetherbeei_contig9584:1485..1621Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9584 1486..1621 -
1683187100.2022805-CDS-P-wetherbeei_contig9584:1648..18871683187100.2022805-CDS-P-wetherbeei_contig9584:1648..1887Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9584 1649..1887 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187100.210481-UTR-P-wetherbeei_contig9584:1887..23011683187100.210481-UTR-P-wetherbeei_contig9584:1887..2301Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9584 1888..2301 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9584.5.1prot_P-wetherbeei_contig9584.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9584 1486..1887 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9584.5.1

>prot_P-wetherbeei_contig9584.5.1 ID=prot_P-wetherbeei_contig9584.5.1|Name=mRNA_P-wetherbeei_contig9584.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=125bp
MFALLVRGYHPLRLCFPDRFQLSHIDDWPGPRSLATTSGVSVDVLSSGYL
DVSVPRVCLKPPMYSEISYLHLITENPNPRFGYRRWVSPFGNLWIKAPSQ
LPTAYRSVARPSSPLIAKASTEHP*
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mRNA from alignment at P-wetherbeei_contig9584:1486..2301-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9584.5.1 ID=mRNA_P-wetherbeei_contig9584.5.1|Name=mRNA_P-wetherbeei_contig9584.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=816bp|location=Sequence derived from alignment at P-wetherbeei_contig9584:1486..2301- (Phaeothamnion wetherbeei SAG_119_79)
CCACAAGTCATCGGAGTCTTTTTCAACAGACACCCGTTCGGTCCTCCAGT GAGTGTTACCTCACCTTCAACCTGCTCATGGCTAGATCACTAGGTTTCGG GTCTAATACAACGAACTTGGCGCCCTATTAAGACTCGCTTTCGCTACGCC TACACCTATCGGTTTAAGCTTGCTCGTTAAATTAAGTCGCTGGCCCATAA TACAAAAGGTACGATGTCACCCAGAACGTATCTTGGGCTCCATCTGTTTG TAGGTGTCCGGTTTCAGGTCTATTTCACTCCCCTCGTCGGGGTGCTTTTC ACCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATGAGGAGTACTTAG GCTTGGAGGGTGGTCCCCCCATGTTCAGACAGGATTTCACGTGTCCCGCC TTACTCGAGCATCAATGTTTGCATTACTTGTACGGGGCTATCACCCTCTA AGGCTCTGCTTTCCTGACAGATTCCAATTGTCTCACATTGATGACTGGCC TGGTCCGCGTTCGCTCGCCACTACTAGCGGAGTCTCGGTTGATGTCCTTT CCTCCGGGTACTTAGATGTTTCAGTTCCCCGGGTTTGCTTAAAACCTCCT ATGTATTCAGAGATTTCATACCTTCACTTGATAACCGAAAATCCAAACCC ACGGTGACTTGCGTCATCGTGCGCTTAGAGTTTCGGCTATCGAAGGTGGG TTTCCCCATTCGGAAATCTGTGGATCAAAGCTCCTTCGCAGCTCCCCACA GCTTATCGCAGCGTAGCACGTCCTTCGTCGCCTCTCATCGCCAAGGCATC CACCGAACACCCTTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9584:1486..2301-

>mRNA_P-wetherbeei_contig9584.5.1 ID=mRNA_P-wetherbeei_contig9584.5.1|Name=mRNA_P-wetherbeei_contig9584.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=375bp|location=Sequence derived from alignment at P-wetherbeei_contig9584:1486..2301- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTTGCATTACTTGTACGGGGCTATCACCCTCTAAGGCTCTGCTTTCC
TGACAGATTCCAATTGTCTCACATTGATGACTGGCCTGGTCCGCGTTCGC
TCGCCACTACTAGCGGAGTCTCGGTTGATGTCCTTTCCTCCGGGTACTTA
GATGTTTCAGTTCCCCGGGTTTGCTTAAAACCTCCTATGTATTCAGAGAT
TTCATACCTTCACTTGATAACCGAAAATCCAAACCCACGTTTCGGCTATC
GAAGGTGGGTTTCCCCATTCGGAAATCTGTGGATCAAAGCTCCTTCGCAG
CTCCCCACAGCTTATCGCAGCGTAGCACGTCCTTCGTCGCCTCTCATCGC
CAAGGCATCCACCGAACACCCTTAA
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