mRNA_P-wetherbeei_contig9584.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9584.4.1
Unique NamemRNA_P-wetherbeei_contig9584.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig9584.4.1 vs. uniprot
Match: F8C0T3_AFIC5 (Uncharacterized protein n=1 Tax=Afipia carboxidovorans (strain ATCC 49405 / DSM 1227 / KCTC 32145 / OM5) TaxID=504832 RepID=F8C0T3_AFIC5)

HSP 1 Score: 53.5 bits (127), Expect = 2.060e-7
Identity = 35/81 (43.21%), Postives = 45/81 (55.56%), Query Frame = 1 
Query:   31 LLRKIEPIVRRSSFTNKDAVTQGNNTGRLATSDAMLNHLAMLQNERPGDSARIRNAYLAICFAIQARIDLLFTMSEIPQTA 273
            +LRKI+P+  RSS  NKD  T   +    A          M+    P    +I + +LA+ F IQARIDLLFTMS+IPQ A
Sbjct:    1 MLRKIDPMAMRSSVANKDHFTTRTSCDARAPK--------MIWRYAP----KIHDTHLAMRFMIQARIDLLFTMSDIPQAA 69
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9584.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
F8C0T3_AFIC52.060e-743.21Uncharacterized protein n=1 Tax=Afipia carboxidovo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9584contigP-wetherbeei_contig9584:1096..1377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog666684.AfiDRAFT_0517
Model size282
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.77e-05
EggNOG OGs2AA77@1|root,30ZG9@2|Bacteria,1P635@1224|Proteobacteria,2UYSX@28211|Alphaproteobacteria,3K5N3@41294|Bradyrhizobiaceae
Cds size282
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187100.1636345-CDS-P-wetherbeei_contig9584:1095..13771683187100.1636345-CDS-P-wetherbeei_contig9584:1095..1377Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9584 1096..1377 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9584.4.1prot_P-wetherbeei_contig9584.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9584 1096..1377 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9584.4.1

>prot_P-wetherbeei_contig9584.4.1 ID=prot_P-wetherbeei_contig9584.4.1|Name=mRNA_P-wetherbeei_contig9584.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=94bp
MQLDMIRKTSLLRKIEPIVRRSSFTNKDAVTQGNNTGRLATSDAMLNHLA
MLQNERPGDSARIRNAYLAICFAIQARIDLLFTMSEIPQTAFW*
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mRNA from alignment at P-wetherbeei_contig9584:1096..1377-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9584.4.1 ID=mRNA_P-wetherbeei_contig9584.4.1|Name=mRNA_P-wetherbeei_contig9584.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=282bp|location=Sequence derived from alignment at P-wetherbeei_contig9584:1096..1377- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGCTGGATATGATTAGAAAGACCAGCTTGCTTCGTAAGATCGAACC
GATAGTGAGGCGGTCAAGCTTCACTAACAAAGACGCTGTTACACAAGGTA
ACAACACCGGTCGTCTCGCGACGTCCGATGCCATGCTGAACCATCTTGCG
ATGCTTCAGAATGAGCGGCCAGGAGATAGTGCAAGGATCCGCAACGCATA
TCTTGCGATATGTTTCGCGATCCAAGCTCGGATCGATCTCCTCTTTACGA
TGTCAGAAATCCCGCAAACAGCGTTCTGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9584:1096..1377-

>mRNA_P-wetherbeei_contig9584.4.1 ID=mRNA_P-wetherbeei_contig9584.4.1|Name=mRNA_P-wetherbeei_contig9584.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=282bp|location=Sequence derived from alignment at P-wetherbeei_contig9584:1096..1377- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGCTGGATATGATTAGAAAGACCAGCTTGCTTCGTAAGATCGAACC
GATAGTGAGGCGGTCAAGCTTCACTAACAAAGACGCTGTTACACAAGGTA
ACAACACCGGTCGTCTCGCGACGTCCGATGCCATGCTGAACCATCTTGCG
ATGCTTCAGAATGAGCGGCCAGGAGATAGTGCAAGGATCCGCAACGCATA
TCTTGCGATATGTTTCGCGATCCAAGCTCGGATCGATCTCCTCTTTACGA
TGTCAGAAATCCCGCAAACAGCGTTCTGGTGA
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