mRNA_P-wetherbeei_contig9584.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9584.2.1
Unique NamemRNA_P-wetherbeei_contig9584.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig9584.2.1 vs. uniprot
Match: A0A7S2JKY0_9EUKA (Uncharacterized protein ycf68 (Fragment) n=2 Tax=Cyanoptyche gloeocystis TaxID=77922 RepID=A0A7S2JKY0_9EUKA)

HSP 1 Score: 229 bits (584), Expect = 5.680e-75
Identity = 113/135 (83.70%), Postives = 118/135 (87.41%), Query Frame = 1 
Query:    1 AFGSAGVNTGAAWLSSARVVRCWVKSRNERNPRLQLPSGNAGHFGGTAGDKPEEGGDDVKSSWPLRAGLHTCYNGGDNGTLRGNPSQISKSRLSSDWALQLEPMKLESLVIVDQHATVNTFPGLVHTARHTMRSG 405
            AFG+A  NTG AWLSSARVVRCWVKSRNERNPRLQLPSGNAGHFG TAGDKPEEGGDDVKSSWPLRAGLHTCYNGGD+G  RG+P  I K+R SSD  LQLE MK+ESLVI DQHA VNTFPGLVHTARHTM  G
Sbjct:   13 AFGNA--NTGGAWLSSARVVRCWVKSRNERNPRLQLPSGNAGHFGETAGDKPEEGGDDVKSSWPLRAGLHTCYNGGDSGMRRGDPEPIPKNRPSSDCTLQLECMKVESLVIADQHAAVNTFPGLVHTARHTMGVG 145
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BLAST of mRNA_P-wetherbeei_contig9584.2.1 vs. uniprot
Match: A0A6A5KX99_LUPAL (Uncharacterized protein ycf68 n=2 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5KX99_LUPAL)

HSP 1 Score: 206 bits (525), Expect = 2.340e-65
Identity = 106/134 (79.10%), Postives = 107/134 (79.85%), Query Frame = 1 
Query:    4 FGSAGVNTGAAWLSSARVVRCWVKSRNERNPRLQLPSGNAGHFGGTAGDKPEEGGDDVKSSWPLRAGLHTCYNGGDNGTLRGNPSQISKSRLSSDWALQLEPMKLESLVIVDQHATVNTFPGLVHTARHTMRSG 405
            F SAG NTGAAWLSSARVVRCWVKSRNERNP L       GH GGTAGDKPEEGGDDVKSSWPL  GLHTCYNGGD+GT      QI KSRLSSD  LQLE MKLESLVI DQHA VNTFPGLVHTARHTM  G
Sbjct:   27 FSSAGWNTGAAWLSSARVVRCWVKSRNERNPYL-------GHSGGTAGDKPEEGGDDVKSSWPLWVGLHTCYNGGDSGTRSREMEQIPKSRLSSDCTLQLECMKLESLVIADQHAAVNTFPGLVHTARHTMGVG 153
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BLAST of mRNA_P-wetherbeei_contig9584.2.1 vs. uniprot
Match: M4ZFA2_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium oligotrophicum S58 TaxID=1245469 RepID=M4ZFA2_9BRAD)

HSP 1 Score: 165 bits (417), Expect = 1.090e-50
Identity = 79/83 (95.18%), Postives = 80/83 (96.39%), Query Frame = 1 
Query:  157 EEGGDDVKSSWPLRAGLHTCYNGGDNGTLRGNPSQISKSRLSSDWALQLEPMKLESLVIVDQHATVNTFPGLVHTARHTMRSG 405
            EEGGDDVKSSWPLRAGLHTCYNGGD+G LRGNPSQISKSRLSSDWALQLEPMKLESLVIVDQHATVNTFPGLVHTARHTM  G
Sbjct:    5 EEGGDDVKSSWPLRAGLHTCYNGGDSGKLRGNPSQISKSRLSSDWALQLEPMKLESLVIVDQHATVNTFPGLVHTARHTMGVG 87
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BLAST of mRNA_P-wetherbeei_contig9584.2.1 vs. uniprot
Match: A0A3S5APK9_9PLAT (Uncharacterized protein ycf68 n=1 Tax=Protopolystoma xenopodis TaxID=117903 RepID=A0A3S5APK9_9PLAT)

HSP 1 Score: 163 bits (413), Expect = 2.610e-49
Identity = 86/134 (64.18%), Postives = 90/134 (67.16%), Query Frame = 1 
Query:    4 FGSAGVNTGAAWLSSARVVRCWVKSRNERNPRLQLPSGNAGHFGGTAGDKPEEGGDDVKSSWPLRAGLHTCYNGGDNGTLRGNPSQISKSRLSSDWALQLEPMKLESLVIVDQHATVNTFPGLVHTARHTMRSG 405
            F SAG +TG AWLSSARVVRCWVKSRNERNP   LP+G                 DDVKSSWPLR GLH CYNG   G   G+  QI K  LSSD +LQLE MKLESLVI DQHA VNTF GLVHTARH M  G
Sbjct:   27 FSSAGPHTGVAWLSSARVVRCWVKSRNERNPHSYLPAGE----------------DDVKSSWPLRVGLHACYNGIHRGKQDGDVEQIPKRYLSSDCSLQLESMKLESLVIADQHAAVNTFSGLVHTARHAMGVG 144
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BLAST of mRNA_P-wetherbeei_contig9584.2.1 vs. uniprot
Match: A0A0V0H990_SOLCH (Uncharacterized protein ycf68 (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0H990_SOLCH)

HSP 1 Score: 160 bits (406), Expect = 3.330e-48
Identity = 88/135 (65.19%), Postives = 92/135 (68.15%), Query Frame = 1 
Query:    1 AFGSAGVNTGAAWLSSARVVRCWVKSRNERNPRLQLPSGNAGHFGGTAGDKPEEGGDDVKSSWPLRAGLHTCYNGGDNGTLRGNPSQISKSRLSSDWALQLEPMKLESLVIVDQHATVNTFPGLVHTARHTMRSG 405
            A GSA   TG AWLSSARVVRCWVKSRNERNP L       GH   TAGDKPEEGGDDVKS+ PLR GLHT YNG   G+     S+  K   SSD  LQL  MK ESLVI  QH  VN FPGLVHTARHTM +G
Sbjct:   11 ALGSA--ETGGAWLSSARVVRCWVKSRNERNPVLSCQH-XVGHSRETAGDKPEEGGDDVKSACPLRLGLHTYYNGWTKGSEAARXSESHKPAXSSDCRLQLACMKXESLVIAGQHTAVNPFPGLVHTARHTMEAG 142
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BLAST of mRNA_P-wetherbeei_contig9584.2.1 vs. uniprot
Match: A0A382FH34_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382FH34_9ZZZZ)

HSP 1 Score: 157 bits (396), Expect = 3.480e-47
Identity = 79/100 (79.00%), Postives = 81/100 (81.00%), Query Frame = 1 
Query:  106 LPSGNAGHFGGTAGDKPEEGGDDVKSSWPLRAGLHTCYNGGDNGTLRGNPSQISKSRLSSDWALQLEPMKLESLVIVDQHATVNTFPGLVHTARHTMRSG 405
            +PSG AGH   TAGDK EEGGDDVKSSWPLRAGLHTCYNGGD+G       QISKS LSSDW LQLE MKLESLVIVDQHATVNTF GLVHTARH M  G
Sbjct:    1 MPSGYAGHSKETAGDKLEEGGDDVKSSWPLRAGLHTCYNGGDSGKQFRKKKQISKSHLSSDWTLQLESMKLESLVIVDQHATVNTFSGLVHTARHAMGVG 100
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BLAST of mRNA_P-wetherbeei_contig9584.2.1 vs. uniprot
Match: A0A6A5KRD3_LUPAL (Uncharacterized protein ycf68 n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5KRD3_LUPAL)

HSP 1 Score: 153 bits (386), Expect = 1.840e-45
Identity = 76/96 (79.17%), Postives = 78/96 (81.25%), Query Frame = 1 
Query:  118 NAGHFGGTAGDKPEEGGDDVKSSWPLRAGLHTCYNGGDNGTLRGNPSQISKSRLSSDWALQLEPMKLESLVIVDQHATVNTFPGLVHTARHTMRSG 405
            + GH GGTAGDKPEEGGDDVKSSWPL  GLHTCYNGGD+GT      QI KSRLSSD  LQLE MKLESLVI DQHA VNTFPGLVHTARHTM  G
Sbjct:   23 SVGHSGGTAGDKPEEGGDDVKSSWPLWVGLHTCYNGGDSGTRSREMEQIPKSRLSSDCTLQLECMKLESLVIADQHAAVNTFPGLVHTARHTMGVG 118
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BLAST of mRNA_P-wetherbeei_contig9584.2.1 vs. uniprot
Match: A0A6A5L5T7_LUPAL (Uncharacterized protein ycf68 (Fragment) n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L5T7_LUPAL)

HSP 1 Score: 152 bits (385), Expect = 6.440e-44
Identity = 76/94 (80.85%), Postives = 77/94 (81.91%), Query Frame = 1 
Query:  124 GHFGGTAGDKPEEGGDDVKSSWPLRAGLHTCYNGGDNGTLRGNPSQISKSRLSSDWALQLEPMKLESLVIVDQHATVNTFPGLVHTARHTMRSG 405
            GH GGTAGDKPEEGGDDVKSSWPL  GLHTCYNGGD+GT      QI KSRLSSD  LQLE MKLESLVI DQHA VNTFPGLVHTARHTM  G
Sbjct:   83 GHSGGTAGDKPEEGGDDVKSSWPLWVGLHTCYNGGDSGTRSREMEQIPKSRLSSDCTLQLECMKLESLVIADQHAAVNTFPGLVHTARHTMGVG 176
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BLAST of mRNA_P-wetherbeei_contig9584.2.1 vs. uniprot
Match: A0A0D6MWA7_ACEAC (Uncharacterized protein n=5 Tax=Acetobacteraceae TaxID=433 RepID=A0A0D6MWA7_ACEAC)

HSP 1 Score: 145 bits (366), Expect = 9.140e-43
Identity = 73/94 (77.66%), Postives = 77/94 (81.91%), Query Frame = 1 
Query:  124 GHFGGTAGDKPEEGGDDVKSSWPLRAGLHTCYNGGDNGTLRGNPSQISKSRLSSDWALQLEPMKLESLVIVDQHATVNTFPGLVHTARHTMRSG 405
            GH   TAGDKPEEGGDDVKSSWPL  GLHTCYNGGD+G L G+   ISK+RLSSD  LQLE MK+ESLVI DQHA VNTFPGLVHTARHTM  G
Sbjct:    3 GHSKETAGDKPEEGGDDVKSSWPLCPGLHTCYNGGDSGKLDGDIVPISKNRLSSDCTLQLECMKVESLVIADQHAAVNTFPGLVHTARHTMGVG 96
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BLAST of mRNA_P-wetherbeei_contig9584.2.1 vs. uniprot
Match: UPI001AA298A5 (Uncharacterized protein n=1 Tax=Novosphingobium sp. PY1 TaxID=1882221 RepID=UPI001AA298A5)

HSP 1 Score: 144 bits (364), Expect = 1.790e-42
Identity = 73/94 (77.66%), Postives = 75/94 (79.79%), Query Frame = 1 
Query:  124 GHFGGTAGDKPEEGGDDVKSSWPLRAGLHTCYNGGDNGTLRGNPSQISKSRLSSDWALQLEPMKLESLVIVDQHATVNTFPGLVHTARHTMRSG 405
            GH   TAGDKPEEGGDDVKSSWPL AGLHTCYNGGD+G        ISKSRLSSD +LQLE MK ESLVI DQHA VNTFPGLVHTARHTM  G
Sbjct:    3 GHSKETAGDKPEEGGDDVKSSWPLHAGLHTCYNGGDSGQRVREHKLISKSRLSSDCSLQLESMKAESLVIADQHAAVNTFPGLVHTARHTMGVG 96
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9584.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2JKY0_9EUKA5.680e-7583.70Uncharacterized protein ycf68 (Fragment) n=2 Tax=C... [more]
A0A6A5KX99_LUPAL2.340e-6579.10Uncharacterized protein ycf68 n=2 Tax=Lupinus albu... [more]
M4ZFA2_9BRAD1.090e-5095.18Uncharacterized protein n=1 Tax=Bradyrhizobium oli... [more]
A0A3S5APK9_9PLAT2.610e-4964.18Uncharacterized protein ycf68 n=1 Tax=Protopolysto... [more]
A0A0V0H990_SOLCH3.330e-4865.19Uncharacterized protein ycf68 (Fragment) n=1 Tax=S... [more]
A0A382FH34_9ZZZZ3.480e-4779.00Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A6A5KRD3_LUPAL1.840e-4579.17Uncharacterized protein ycf68 n=1 Tax=Lupinus albu... [more]
A0A6A5L5T7_LUPAL6.440e-4480.85Uncharacterized protein ycf68 (Fragment) n=1 Tax=L... [more]
A0A0D6MWA7_ACEAC9.140e-4377.66Uncharacterized protein n=5 Tax=Acetobacteraceae T... [more]
UPI001AA298A51.790e-4277.66Uncharacterized protein n=1 Tax=Novosphingobium sp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9584contigP-wetherbeei_contig9584:59..466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog335659.S23_63860
Model size408
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.75e-53
EggNOG OGs2DMNG@1|root,32SP1@2|Bacteria,1NAN7@1224|Proteobacteria,2UD5X@28211|Alphaproteobacteria,3K45J@41294|Bradyrhizobiaceae
Cds size408
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187100.1360621-CDS-P-wetherbeei_contig9584:58..4661683187100.1360621-CDS-P-wetherbeei_contig9584:58..466Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9584 59..466 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9584.2.1prot_P-wetherbeei_contig9584.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9584 59..466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9584.2.1

>prot_P-wetherbeei_contig9584.2.1 ID=prot_P-wetherbeei_contig9584.2.1|Name=mRNA_P-wetherbeei_contig9584.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=136bp
AFGSAGVNTGAAWLSSARVVRCWVKSRNERNPRLQLPSGNAGHFGGTAGD
KPEEGGDDVKSSWPLRAGLHTCYNGGDNGTLRGNPSQISKSRLSSDWALQ
LEPMKLESLVIVDQHATVNTFPGLVHTARHTMRSG*
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mRNA from alignment at P-wetherbeei_contig9584:59..466+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9584.2.1 ID=mRNA_P-wetherbeei_contig9584.2.1|Name=mRNA_P-wetherbeei_contig9584.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig9584:59..466+ (Phaeothamnion wetherbeei SAG_119_79)
GCCTTCGGTTCGGCCGGAGTCAACACAGGTGCTGCATGGCTGTCGTCAGC
TCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTC
TCCAGTTGCCATCAGGTAATGCTGGGCACTTTGGAGGAACTGCCGGTGAT
AAGCCGGAGGAAGGTGGGGATGACGTCAAGTCCTCATGGCCCTTACGGGC
TGGGCTACACACGTGCTACAATGGCGGTGACAATGGGACGCTAAGGGGCA
ACCCTTCGCAAATCTCAAAAAGCCGTCTCAGTTCGGATTGGGCTCTGCAA
CTCGAGCCCATGAAGTTGGAATCGCTAGTAATCGTGGATCAGCATGCCAC
GGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGAGAT
CGGGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9584:59..466+

>mRNA_P-wetherbeei_contig9584.2.1 ID=mRNA_P-wetherbeei_contig9584.2.1|Name=mRNA_P-wetherbeei_contig9584.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig9584:59..466+ (Phaeothamnion wetherbeei SAG_119_79)
GCCTTCGGTTCGGCCGGAGTCAACACAGGTGCTGCATGGCTGTCGTCAGC
TCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTC
TCCAGTTGCCATCAGGTAATGCTGGGCACTTTGGAGGAACTGCCGGTGAT
AAGCCGGAGGAAGGTGGGGATGACGTCAAGTCCTCATGGCCCTTACGGGC
TGGGCTACACACGTGCTACAATGGCGGTGACAATGGGACGCTAAGGGGCA
ACCCTTCGCAAATCTCAAAAAGCCGTCTCAGTTCGGATTGGGCTCTGCAA
CTCGAGCCCATGAAGTTGGAATCGCTAGTAATCGTGGATCAGCATGCCAC
GGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGAGAT
CGGGGTGA
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