mRNA_P-wetherbeei_contig9571.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9571.1.1
Unique NamemRNA_P-wetherbeei_contig9571.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig9571.1.1 vs. uniprot
Match: A0A7S2V562_9STRA (Protein transport protein SEC23 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V562_9STRA)

HSP 1 Score: 306 bits (783), Expect = 8.010e-104
Identity = 147/179 (82.12%), Postives = 165/179 (92.18%), Query Frame = 1 
Query:    1 QFMFHLRRSQFLQLFNCSPDESSYYRSILTRESTANSLVMIQPSLLSYSFQGPPMPVLLDATSVRADTILLLDTFFTVVVFHGETIAAWREQGYQEHEEHANFRNLLHAPQGDAQMIMDNRFPVPRFILCDHHKSEARFLMAKLNPSVTHTTNDGSTGQTIFTDDVSLKVFMQHLIKLS 537
            QFMFHLRRSQF+Q  N SPDE++YYRS+LTRE  +NSLVMIQPSLLSYSFQGPP PVLLDA+SVR DT+LLLDTFF V+VFHGETIAAWREQGYQ+HEEHANFRNLL APQ DAQ+IMD+RFPVPR+I+CD HKSE RFLMA+LNPSVTH TNDGS GQTIFTDDVSL+VFM+HL+KL+
Sbjct:   33 QFMFHLRRSQFMQQINYSPDENAYYRSMLTRECCSNSLVMIQPSLLSYSFQGPPQPVLLDASSVRQDTVLLLDTFFHVLVFHGETIAAWREQGYQDHEEHANFRNLLLAPQADAQVIMDSRFPVPRYIVCDQHKSEGRFLMARLNPSVTHNTNDGSAGQTIFTDDVSLRVFMEHLMKLA 211
[Close]
BLAST of mRNA_P-wetherbeei_contig9571.1.1 vs. uniprot
Match: A0A835YT42_9STRA (Protein transport protein SEC23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT42_9STRA)

HSP 1 Score: 309 bits (792), Expect = 4.510e-98
Identity = 154/179 (86.03%), Postives = 162/179 (90.50%), Query Frame = 1 
Query:    1 QFMFHLRRSQFLQLFNCSPDESSYYRSILTRESTANSLVMIQPSLLSYSFQGPPMPVLLDATSVRADTILLLDTFFTVVVFHGETIAAWREQGYQEHEEHANFRNLLHAPQGDAQMIMDNRFPVPRFILCDHHKSEARFLMAKLNPSVTHTTNDGSTGQTIFTDDVSLKVFMQHLIKLS 537
            QFMFHLRRSQFLQ FN SPDESSYYRSIL RE+T NS+VMIQPSLLSYSFQG PMPVLLDA+SVR DTILLLDTFF VVVFHGETIAAWREQGYQE EEH NFRNLL APQ DAQMIMDNRFPVPRFI+CD HKSE RFLMAKLNPSVTH +NDGS GQ IFTDDVSL+VFM+HL+ LS
Sbjct:  610 QFMFHLRRSQFLQQFNSSPDESSYYRSILARENTNNSMVMIQPSLLSYSFQGRPMPVLLDASSVRQDTILLLDTFFQVVVFHGETIAAWREQGYQEQEEHVNFRNLLLAPQSDAQMIMDNRFPVPRFIVCDQHKSETRFLMAKLNPSVTHNSNDGSGGQQIFTDDVSLRVFMEHLMNLS 788
[Close]
BLAST of mRNA_P-wetherbeei_contig9571.1.1 vs. uniprot
Match: A0A7S2CH11_9STRA (Protein transport protein SEC23 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CH11_9STRA)

HSP 1 Score: 293 bits (749), Expect = 5.210e-98
Identity = 142/179 (79.33%), Postives = 159/179 (88.83%), Query Frame = 1 
Query:    1 QFMFHLRRSQFLQLFNCSPDESSYYRSILTRESTANSLVMIQPSLLSYSFQGPPMPVLLDATSVRADTILLLDTFFTVVVFHGETIAAWREQGYQEHEEHANFRNLLHAPQGDAQMIMDNRFPVPRFILCDHHKSEARFLMAKLNPSVTHTTNDGSTGQTIFTDDVSLKVFMQHLIKLS 537
            QFMFHLRRSQFLQLFN SPDES+YYRS+L RE+T NSLVMIQPSLLSYSFQG P PVLLDA SV  DTILLLDTFF VVVFHGE IA WR+QGYQ+HEEH +F+NLL APQ DAQ IMD RFPVPR+I+CD HKSEARF++AKLNPS+TH TNDGS G+ IFTDDVSL+VFM+HL+KL+
Sbjct:   76 QFMFHLRRSQFLQLFNTSPDESAYYRSVLVRENTTNSLVMIQPSLLSYSFQGTPSPVLLDAASVSPDTILLLDTFFHVVVFHGEKIAMWRDQGYQDHEEHIHFKNLLIAPQTDAQRIMDQRFPVPRYIVCDQHKSEARFVIAKLNPSLTHNTNDGSAGERIFTDDVSLRVFMEHLMKLA 254
[Close]
BLAST of mRNA_P-wetherbeei_contig9571.1.1 vs. uniprot
Match: A0A812TWJ3_SYMMI (Protein transport protein SEC23 n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TWJ3_SYMMI)

HSP 1 Score: 283 bits (723), Expect = 2.240e-94
Identity = 138/179 (77.09%), Postives = 155/179 (86.59%), Query Frame = 1 
Query:    1 QFMFHLRRSQFLQLFNCSPDESSYYRSILTRESTANSLVMIQPSLLSYSFQGPPMPVLLDATSVRADTILLLDTFFTVVVFHGETIAAWREQGYQEHEEHANFRNLLHAPQGDAQMIMDNRFPVPRFILCDHHKSEARFLMAKLNPSVTHTTNDGSTGQTIFTDDVSLKVFMQHLIKLS 537
            QFMFHLRRS+FLQ FN SPDE + YR ILTRE T+NSL+M+QPSLLSYSFQGPP PVLLDA SVR DTILLLDTFF VVVF GETIAAW++QGYQ  EEH NF+NLL APQ DAQMIM NRFPVPR+I+ D HKSEARFL+A LNPS+TH ++DG  GQ IFTDDVSL+VFM+HL+KLS
Sbjct:   54 QFMFHLRRSKFLQNFNSSPDEQAVYRHILTRECTSNSLIMLQPSLLSYSFQGPPQPVLLDAASVRPDTILLLDTFFHVVVFLGETIAAWKQQGYQHQEEHINFKNLLEAPQNDAQMIMSNRFPVPRYIVADQHKSEARFLLAMLNPSITHHSSDGGAGQQIFTDDVSLRVFMEHLMKLS 232
[Close]
BLAST of mRNA_P-wetherbeei_contig9571.1.1 vs. uniprot
Match: A0A7S3HLG5_9STRA (Protein transport protein SEC23 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HLG5_9STRA)

HSP 1 Score: 290 bits (742), Expect = 2.540e-93
Identity = 139/179 (77.65%), Postives = 157/179 (87.71%), Query Frame = 1 
Query:    1 QFMFHLRRSQFLQLFNCSPDESSYYRSILTRESTANSLVMIQPSLLSYSFQGPPMPVLLDATSVRADTILLLDTFFTVVVFHGETIAAWREQGYQEHEEHANFRNLLHAPQGDAQMIMDNRFPVPRFILCDHHKSEARFLMAKLNPSVTHTTNDGSTGQTIFTDDVSLKVFMQHLIKLS 537
            QFMFHLRRS+FLQ FN SPDE + YR ILTRE+T NSL+M+QPSLLSYSF GPP PVLLDATSVR DTILLLDTFF V+VFHGETIAAW++QGYQ  EEH NFRNLL APQ DAQMIM+NRFPVPR+I+CD HKSEARFL+A LNPSVTH + D + GQ IFTDDVSL+VFM+HL+KL+
Sbjct:  349 QFMFHLRRSKFLQSFNSSPDEQAVYRHILTRENTTNSLIMLQPSLLSYSFHGPPQPVLLDATSVRPDTILLLDTFFHVIVFHGETIAAWKQQGYQHQEEHVNFRNLLEAPQNDAQMIMNNRFPVPRYIVCDQHKSEARFLLAMLNPSVTHNSADSAAGQAIFTDDVSLRVFMEHLMKLA 527
[Close]
BLAST of mRNA_P-wetherbeei_contig9571.1.1 vs. uniprot
Match: A0A7S2I581_9STRA (Protein transport protein SEC23 n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I581_9STRA)

HSP 1 Score: 285 bits (728), Expect = 3.910e-93
Identity = 142/180 (78.89%), Postives = 156/180 (86.67%), Query Frame = 1 
Query:    1 QFMFHLRRSQFLQLFNCSPDESSYYRSILTRESTANSLVMIQPSLLSYSFQGPPMPVLLDATSVRADTILLLDTFFTVVVFHGETIAAWREQGYQEHEEHANFRNLLHAPQGDAQMIMDNRFPVPRFILCDHHKSEARFLMAKLNPSVTHTTNDGSTGQT-IFTDDVSLKVFMQHLIKLS 537
            QFMFHLRRSQFLQLFN SPDE++YYR +LTRE+T NSLVMIQP+LLSYSF GPP P LLDA SVR DTILLLDTFF VVVFHGETIAAWREQ Y E EEHA FR+LL APQ DAQMIMD RFPVPR+I+CD HKSEARFLMAKLNPS TH T +G  G T +FTDDVSL+VFM+HL+KL+
Sbjct:  195 QFMFHLRRSQFLQLFNSSPDEAAYYRYVLTRENTTNSLVMIQPTLLSYSFNGPPQPALLDAQSVRPDTILLLDTFFHVVVFHGETIAAWREQKYHEQEEHAAFRDLLEAPQADAQMIMDARFPVPRYIVCDQHKSEARFLMAKLNPSCTHNTPEGGGGGTQVFTDDVSLRVFMEHLMKLA 374
[Close]
BLAST of mRNA_P-wetherbeei_contig9571.1.1 vs. uniprot
Match: A0A7S2JSI2_9STRA (Protein transport protein SEC23 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JSI2_9STRA)

HSP 1 Score: 286 bits (731), Expect = 7.670e-93
Identity = 140/179 (78.21%), Postives = 156/179 (87.15%), Query Frame = 1 
Query:    1 QFMFHLRRSQFLQLFNCSPDESSYYRSILTRESTANSLVMIQPSLLSYSFQGPPMPVLLDATSVRADTILLLDTFFTVVVFHGETIAAWREQGYQEHEEHANFRNLLHAPQGDAQMIMDNRFPVPRFILCDHHKSEARFLMAKLNPSVTHTTNDGSTGQTIFTDDVSLKVFMQHLIKLS 537
            QFMFHLRRS FLQLFN SPDE+SYYR IL+RE+T+NSLVMIQP+LLSYSF GPP P LLD+ SVR DTILLLDTFF VVVFHGETIAAWRE  Y E EEHA+FR LL APQ DAQ+IMD+RFPVPR+I+CD HKSEARFLMAKLNPSVTH T +G  G  +FTDDVSL+VFM+HL+KLS
Sbjct:  253 QFMFHLRRSPFLQLFNSSPDEASYYRYILSRENTSNSLVMIQPTLLSYSFNGPPQPTLLDSQSVRPDTILLLDTFFHVVVFHGETIAAWREMKYHEQEEHASFRQLLEAPQDDAQLIMDSRFPVPRYIVCDQHKSEARFLMAKLNPSVTHHTGEGGGGAQVFTDDVSLRVFMEHLMKLS 431
[Close]
BLAST of mRNA_P-wetherbeei_contig9571.1.1 vs. uniprot
Match: D8LCK6_ECTSI (Protein transport protein SEC23 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCK6_ECTSI)

HSP 1 Score: 295 bits (754), Expect = 1.610e-92
Identity = 142/180 (78.89%), Postives = 160/180 (88.89%), Query Frame = 1 
Query:    1 QFMFHLRRSQFLQLFNCSPDESSYYRSILTRESTANSLVMIQPSLLSYSFQGPPMPVLLDATSVRADTILLLDTFFTVVVFHGETIAAWREQGYQEHEEHANFRNLLHAPQGDAQMIMDNRFPVPRFILCDHHKSEARFLMAKLNPSVTHTTNDGSTGQTIFTDDVSLKVFMQHLIKLST 540
            Q+MFHLRRSQFLQLFN SPDE+SYYR IL RE+ A+SLVM+QPSLLSYSFQGPP+P +LDA SVR DTILLLDTFF VV+FHGETI AWREQGYQ+HEEHA FR LL APQ DAQ+IM +R PVPR+I+CD HKSEARFL++KLNPSVTH T DGS GQ IFTDDVSL+VFM+HL+KLST
Sbjct:  602 QYMFHLRRSQFLQLFNSSPDEASYYRGILCRENVASSLVMLQPSLLSYSFQGPPVPAMLDAASVRPDTILLLDTFFHVVIFHGETIGAWREQGYQDHEEHAAFRQLLEAPQADAQIIMQSRCPVPRYIVCDQHKSEARFLISKLNPSVTHNTTDGSQGQAIFTDDVSLRVFMEHLMKLST 781
[Close]
BLAST of mRNA_P-wetherbeei_contig9571.1.1 vs. uniprot
Match: A0A6A5ASD8_9STRA (Protein transport protein SEC23 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ASD8_9STRA)

HSP 1 Score: 280 bits (715), Expect = 6.900e-92
Identity = 137/179 (76.54%), Postives = 156/179 (87.15%), Query Frame = 1 
Query:    1 QFMFHLRRSQFLQLFNCSPDESSYYRSILTRESTANSLVMIQPSLLSYSFQGPPMPVLLDATSVRADTILLLDTFFTVVVFHGETIAAWREQGYQEHEEHANFRNLLHAPQGDAQMIMDNRFPVPRFILCDHHKSEARFLMAKLNPSVTHTTNDGSTGQTIFTDDVSLKVFMQHLIKLS 537
            QFMFHLRRSQFLQ+F  SPDESS YR  L REST NSLVMIQPSLLSYSFQGPP P LLD++SVRADTILLLD+FF VVVFHGETIA+WR+Q Y EH +HA+F+NLL APQ DAQ+IMD+RFPVPR+++CD HKS++RFLMAKLNPS TH + DG  G+ IFTDDVSLKVFM+HLIK S
Sbjct:  144 QFMFHLRRSQFLQVFGYSPDESSTYRHCLLRESTTNSLVMIQPSLLSYSFQGPPTPALLDSSSVRADTILLLDSFFYVVVFHGETIASWRDQKYHEHADHAHFKNLLEAPQADAQLIMDSRFPVPRYVVCDQHKSQSRFLMAKLNPSTTHMSGDGQ-GEVIFTDDVSLKVFMEHLIKAS 321
[Close]
BLAST of mRNA_P-wetherbeei_contig9571.1.1 vs. uniprot
Match: A0A6U3YQE8_9STRA (Protein transport protein SEC23 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3YQE8_9STRA)

HSP 1 Score: 288 bits (736), Expect = 7.130e-90
Identity = 139/179 (77.65%), Postives = 158/179 (88.27%), Query Frame = 1 
Query:    1 QFMFHLRRSQFLQLFNCSPDESSYYRSILTRESTANSLVMIQPSLLSYSFQGPPMPVLLDATSVRADTILLLDTFFTVVVFHGETIAAWREQGYQEHEEHANFRNLLHAPQGDAQMIMDNRFPVPRFILCDHHKSEARFLMAKLNPSVTHTTNDGSTGQTIFTDDVSLKVFMQHLIKLS 537
            QFMFHLRRSQFLQLFN SPDESSYYRS+L RE+T NSLVMIQPSLLSYSF GPP PVLLDA SV  DTILLLDTFF VVVFHGE +A WR+QGYQ++ EH +F+NLL APQ +AQ IM+ RFPVPR+I+CD HKSEARF++AKLNPSVTH TNDGS G+ IFTDDVSL+VFM+HL+KL+
Sbjct:  601 QFMFHLRRSQFLQLFNTSPDESSYYRSVLMRENTTNSLVMIQPSLLSYSFNGPPTPVLLDAESVNPDTILLLDTFFHVVVFHGEKMAMWRDQGYQDNPEHVHFKNLLIAPQAEAQRIMEQRFPVPRYIVCDQHKSEARFVIAKLNPSVTHNTNDGSAGERIFTDDVSLRVFMEHLMKLA 779
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9571.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2V562_9STRA8.010e-10482.12Protein transport protein SEC23 n=1 Tax=Fibrocapsa... [more]
A0A835YT42_9STRA4.510e-9886.03Protein transport protein SEC23 n=1 Tax=Tribonema ... [more]
A0A7S2CH11_9STRA5.210e-9879.33Protein transport protein SEC23 n=1 Tax=Florenciel... [more]
A0A812TWJ3_SYMMI2.240e-9477.09Protein transport protein SEC23 n=1 Tax=Symbiodini... [more]
A0A7S3HLG5_9STRA2.540e-9377.65Protein transport protein SEC23 n=1 Tax=Spumella e... [more]
A0A7S2I581_9STRA3.910e-9378.89Protein transport protein SEC23 n=1 Tax=Helicothec... [more]
A0A7S2JSI2_9STRA7.670e-9378.21Protein transport protein SEC23 n=1 Tax=Leptocylin... [more]
D8LCK6_ECTSI1.610e-9278.89Protein transport protein SEC23 n=2 Tax=Ectocarpus... [more]
A0A6A5ASD8_9STRA6.900e-9276.54Protein transport protein SEC23 n=1 Tax=Aphanomyce... [more]
A0A6U3YQE8_9STRA7.130e-9077.65Protein transport protein SEC23 n=1 Tax=Dictyocha ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9571contigP-wetherbeei_contig9571:460..2284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LCK6
Preferred nameSEC23A
PFAMsGelsolin,Sec23_BS,Sec23_helical,Sec23_trunk,zf-Sec23_Sec24
Model size552
Max annot lvl2759|Eukaryota
KEGG koko:K14006
KEGG Pathwayko04141,map04141
KEGG ModuleM00404
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0001501,GO:0002164,GO:0002165,GO:0002168,GO:0002376,GO:0002474,GO:0002478,GO:0002495,GO:0002504,GO:0003002,GO:0003330,GO:0003331,GO:0003400,GO:0003674,GO:0005096,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005795,GO:0005798,GO:0005829,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006914,GO:0006950,GO:0006996,GO:0007029,GO:0007030,GO:0007163,GO:0007275,GO:0007389,GO:0007399,GO:0007424,GO:0007517,GO:0007591,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008360,GO:0008363,GO:0009056,GO:0009057,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009887,GO:0009888,GO:0009987,GO:0010033,GO:0010243,GO:0010256,GO:0010498,GO:0010720,GO:0010769,GO:0010770,GO:0010975,GO:0010976,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016203,GO:0016236,GO:0019538,GO:0019882,GO:0019884,GO:0019886,GO:0019898,GO:0019941,GO:0022008,GO:0022407,GO:0022409,GO:0022603,GO:0022604,GO:0022607,GO:0030011,GO:0030117,GO:0030120,GO:0030127,GO:0030133,GO:0030134,GO:0030135,GO:0030154,GO:0030155,GO:0030163,GO:0030198,GO:0030234,GO:0030433,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030695,GO:0031090,GO:0031344,GO:0031346,GO:0031410,GO:0031982,GO:0031984,GO:0032386,GO:0032501,GO:0032502,GO:0032879,GO:0032991,GO:0033036,GO:0033043,GO:0033333,GO:0033334,GO:0033339,GO:0033554,GO:0034394,GO:0034613,GO:0034622,GO:0034976,GO:0035017,GO:0035107,GO:0035138,GO:0035148,GO:0035149,GO:0035152,GO:0035239,GO:0035293,GO:0035295,GO:0035459,GO:0036503,GO:0040003,GO:0042175,GO:0042221,GO:0042303,GO:0042335,GO:0042337,GO:0042886,GO:0043009,GO:0043062,GO:0043085,GO:0043087,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043547,GO:0043632,GO:0043933,GO:0044085,GO:0044087,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045785,GO:0046872,GO:0046907,GO:0046914,GO:0048002,GO:0048070,GO:0048079,GO:0048081,GO:0048087,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048209,GO:0048471,GO:0048475,GO:0048513,GO:0048518,GO:0048522,GO:0048562,GO:0048568,GO:0048598,GO:0048646,GO:0048699,GO:0048701,GO:0048702,GO:0048704,GO:0048705,GO:0048706,GO:0048731,GO:0048736,GO:0048814,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050773,GO:0050775,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051094,GO:0051128,GO:0051130,GO:0051179,GO:0051216,GO:0051234,GO:0051239,GO:0051240,GO:0051336,GO:0051345,GO:0051603,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051668,GO:0051716,GO:0051960,GO:0051962,GO:0060284,GO:0060341,GO:0060538,GO:0060541,GO:0060589,GO:0060627,GO:0060628,GO:0061024,GO:0061061,GO:0061448,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070727,GO:0070971,GO:0071702,GO:0071704,GO:0071705,GO:0071711,GO:0071840,GO:0072657,GO:0072659,GO:0090110,GO:0090113,GO:0090114,GO:0097708,GO:0098588,GO:0098772,GO:0098791,GO:0098796,GO:0098805,GO:0098827,GO:0120035,GO:1900006,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1903053,GO:1903055,GO:1903530,GO:1903532,GO:1904888,GO:1990778,GO:2000026
Exons5
Evalue1.87e-92
EggNOG OGsCOG5047@1|root,KOG1986@2759|Eukaryota
Ec32 ortholog descriptionVesicle coat complex COPII, subunit SEC23
Ec32 orthologEc-03_002540.1
DescriptionCOPII-coated vesicle budding
Cds size546
COG categoryU
BRITEko00000,ko00001,ko00002,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9571.1.1prot_P-wetherbeei_contig9571.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9571 460..2278 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187099.55979-CDS-P-wetherbeei_contig9571:459..5041683187099.55979-CDS-P-wetherbeei_contig9571:459..504Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9571 460..504 -
1683187099.574234-CDS-P-wetherbeei_contig9571:836..9351683187099.574234-CDS-P-wetherbeei_contig9571:836..935Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9571 837..935 -
1683187099.585265-CDS-P-wetherbeei_contig9571:1155..12781683187099.585265-CDS-P-wetherbeei_contig9571:1155..1278Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9571 1156..1278 -
1683187099.5991192-CDS-P-wetherbeei_contig9571:1631..17631683187099.5991192-CDS-P-wetherbeei_contig9571:1631..1763Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9571 1632..1763 -
1683187099.6089683-CDS-P-wetherbeei_contig9571:2131..22781683187099.6089683-CDS-P-wetherbeei_contig9571:2131..2278Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9571 2132..2278 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187099.6198692-UTR-P-wetherbeei_contig9571:2278..22841683187099.6198692-UTR-P-wetherbeei_contig9571:2278..2284Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9571 2279..2284 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9571.1.1

>prot_P-wetherbeei_contig9571.1.1 ID=prot_P-wetherbeei_contig9571.1.1|Name=mRNA_P-wetherbeei_contig9571.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=182bp
MFHLRRSQFLQLFNCSPDESSYYRSILTRESTANSLVMIQPSLLSYSFQG
PPMPVLLDATSVRADTILLLDTFFTVVVFHGETIAAWREQGYQEHEEHAN
FRNLLHAPQGDAQMIMDNRFPVPRFILCDHHKSEARFLMAKLNPSVTHTT
NDGSTGQTIFTDDVSLKVFMQHLIKLSTAAS*
back to top

mRNA from alignment at P-wetherbeei_contig9571:460..2284-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9571.1.1 ID=mRNA_P-wetherbeei_contig9571.1.1|Name=mRNA_P-wetherbeei_contig9571.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1825bp|location=Sequence derived from alignment at P-wetherbeei_contig9571:460..2284- (Phaeothamnion wetherbeei SAG_119_79)
CAGTTCATGTTCCACCTGCGACGCTCGCAGTTCCTGCAGCTTTTCAACTG
CTCTCCCGACGAGAGCAGCTACTACCGCAGCATCCTCACGCGCGAGTCGA
CCGCCAACTCGCTCGTCATGATCCAGCCGTCGCTCCTCAGCTACTCGTTC
CAGGTTGGTTAAAGCAGAATAGGGACAGAACGGCACCGAAAGTGGGAAAA
CGACGCGGAATAGAAACGCAGCGACCGATGTTCCTTCTAGACTAAAGCCC
GGGAGAAGCGGCGGCGGAAAAATTGAGTGAGGAAGGAAATGTGGTGACCC
TTGTCCATTTTGTTCATTCTATTGCCTCAAGTTGCCGTTTTCCTTTTGTT
GTCCTTTTCCTGCCTTTTGCAGCTCTATGCGGGTGCCGTCTTTCCTGCCG
GCGTCGCATGTCTGCTCTTCCCGCTTATGTGCCCTTGATCCCTTGATCCT
CTGTCACTAAGCATCTTCTGCTGTTTTCCTGTGTTCCCTGACCAATCCAA
TCTTACGAACGATCTATGCAGGGCCCGCCGATGCCGGTGCTGCTAGACGC
GACGTCGGTGCGCGCGGACACGATCCTGCTGCTCGACACCTTCTTCACCG
TCGTCGTCTTCCACGGCGAGACCATCGCCGCATGGCGAGAGCAGGGATAT
CAGGTGCGTTCCGTCTCCCGTTCGCCTGAGGGCCTTTCCCAAGAGAGGCT
GTTTCGTGATGTAATAGCTTAGCGCAAGGTTTTGAGCGTAACGAAAGGCG
GGAGGCCGTGTTGCTCGGAGATGATGACAGCGGATGACGCGACCTTTCAG
CTCCCTTTCGTTATCAGCGTCTATACCGCTGTAAAGCAGTACGCCAGCGT
GGCATTTTCAGGAACTCCCGCGGCTTCACTTTCCCCATTTGATGCTCCAA
TCATAGTTGAGAGAGAGCTTCTCTTGCCCGCTGGCTGATGACGTTTTGAT
TGTTTCCCTTTCATGCCGTCCGTTGCGCATGTCTCCCCTCCTCCCCCCAA
CTGCAGGAGCACGAGGAGCATGCTAACTTCCGGAACCTGCTCCACGCGCC
GCAGGGGGACGCCCAAATGATCATGGACAACCGATTCCCGGTGCCACGCT
TCATCCTCTGCGACCACCACAAGTCCGAGGTCACTAGGAAGAAGGCGCCG
CCGCCTGCCGCAGTCACTTCTTTACATCCTGTAGCCGTCGCTCTTGTGAT
GTCACGATCCTCTTTGCTGTGCTTGTCCACAGCTGCTCACCTCTTAGGTC
GTTGCCCCCCTCACCACCGCCACCCGTCACGTACGCCGCCGCATCGCTCC
CGGCTCGCTACCCTCCATCCGCTGCTGCCGGCGCGTCGGAATGAACCAGG
CGCGGTTCCTGATGGCGAAGCTGAACCCGAGCGTGACGCACACGACGAAC
GACGGCTCGACCGGGCAGACCATCTTCACCGACGACGTCTCGCTCAAGGT
GGGTAGTCTATGATGTTCTCGCTGCATGCCGTCTCTTGCCGCAGCTCTTT
GTTGCTGTGATTCTATGTTGATCGCTCTGGCGTTATTGCACTTCCACTCT
GCTCGCTTGGCTATCGAAGCCTGTCCAAATGATTTTCTCTGCTGCCATTG
GCAGTGCGGCATTTTGGCGGGCTTTTTGTTGCTTTATGAAGTGATTTGAC
AGTGAGTCTAATGTGTATTAGTAGAGCCTCTTCTGAATGGATATTGGGTC
ACTTCTAAACCGGCTGCCTCTCTTTTCTCGTTTTCTGTTCATGCCACGCG
TCGTCCGCTCCCGCATCGGAACTATTACAGGTGTTCATGCAGCACCTCAT
CAAGCTGAGCACAGCAGCATCGTAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig9571:460..2284-

>mRNA_P-wetherbeei_contig9571.1.1 ID=mRNA_P-wetherbeei_contig9571.1.1|Name=mRNA_P-wetherbeei_contig9571.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=546bp|location=Sequence derived from alignment at P-wetherbeei_contig9571:460..2284- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCCACCTGCGACGCTCGCAGTTCCTGCAGCTTTTCAACTGCTCTCC
CGACGAGAGCAGCTACTACCGCAGCATCCTCACGCGCGAGTCGACCGCCA
ACTCGCTCGTCATGATCCAGCCGTCGCTCCTCAGCTACTCGTTCCAGGGC
CCGCCGATGCCGGTGCTGCTAGACGCGACGTCGGTGCGCGCGGACACGAT
CCTGCTGCTCGACACCTTCTTCACCGTCGTCGTCTTCCACGGCGAGACCA
TCGCCGCATGGCGAGAGCAGGGATATCAGGAGCACGAGGAGCATGCTAAC
TTCCGGAACCTGCTCCACGCGCCGCAGGGGGACGCCCAAATGATCATGGA
CAACCGATTCCCGGTGCCACGCTTCATCCTCTGCGACCACCACAAGTCCG
AGGCGCGGTTCCTGATGGCGAAGCTGAACCCGAGCGTGACGCACACGACG
AACGACGGCTCGACCGGGCAGACCATCTTCACCGACGACGTCTCGCTCAA
GGTGTTCATGCAGCACCTCATCAAGCTGAGCACAGCAGCATCGTAA
back to top