mRNA_P-wetherbeei_contig9570.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9570.1.1
Unique NamemRNA_P-wetherbeei_contig9570.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9570.1.1 vs. uniprot
Match: A0A836CL52_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL52_9STRA)

HSP 1 Score: 178 bits (452), Expect = 4.830e-49
Identity = 93/152 (61.18%), Postives = 116/152 (76.32%), Query Frame = 1
Query:    1 LSTHLEAALGTSPSTIGFVFILPSILYSVAAANAEALVDYRGVKRTMLWGFLILSASLLLHGPVPLLEPLLPTPLAVRFAVAAGMLAFQAGSALAVVPAFAAMQGGVAHLGRGADNIVASIHSLAIGAGEVMGPVLGGIMMELMPKKRIIQC 456
            LS HL  AL T+P ++GF+FI+PSI YS+ AA  E +V+  G +RTML+GF +LS SL L GP P L+ +  +P AVR A+AAGML FQ GSA+A VPAFA MQGGVAHLGRGAD+IVA +HSLAIG GEV+GP+LGG MME+  + R+  C
Sbjct:  789 LSPHLAQALQTTPQSVGFIFIVPSITYSLMAAKTERVVEGFGARRTMLFGFAVLSISLFLFGPAPALDAVGLSPAAVRGAIAAGMLIFQVGSAMACVPAFAIMQGGVAHLGRGADSIVAGVHSLAIGMGEVVGPLLGGFMMEMGRQTRVASC 940          
BLAST of mRNA_P-wetherbeei_contig9570.1.1 vs. uniprot
Match: D7G1X7_ECTSI (Major facilitator superfamily permease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1X7_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 2.020e-32
Identity = 70/152 (46.05%), Postives = 98/152 (64.47%), Query Frame = 1
Query:    1 LSTHLEAALGTSPSTIGFVFILPSILYSVAAANAEALVDYRGVKRTMLWGFLILSASLLLHGPVPLLEPLLPTPLAVRFAVAAGMLAFQAGSALAVVPAFAAMQGGVAHLGRGADNIVASIHSLAIGAGEVMGPVLGGIMMELMPKKRIIQC 456
            L+ HL   L TSP +IGFV +LP++LY++ A  AE +VD +G +RT+L G  I+S SLL+ GP P L P L T  A R A++ G+LAFQ               GGVA +G GAD++VAS H+++IG GEV+GP++GG ++EL+P      C
Sbjct:  164 LAPHLAQTLSTSPRSIGFVLVLPNVLYTLTAMKAEDIVDRQGARRTLLAGLCIMSMSLLMSGPSPALAPALVTRGAARGAISVGLLAFQ---------------GGVAGMGTGADDMVASAHAMSIGVGEVIGPMIGGFVVELLPTSPAFAC 300          
BLAST of mRNA_P-wetherbeei_contig9570.1.1 vs. uniprot
Match: A0A6H5KPD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD6_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 8.850e-13
Identity = 42/96 (43.75%), Postives = 59/96 (61.46%), Query Frame = 1
Query:  169 SLLLHGPVPLLEPLLPTPLAVRFAVAAGMLAFQAGSALAVVPAFAAMQGGVAHLGRGADNIVASIHSLAIGAGEVMGPVLGGIMMELMPKKRIIQC 456
            SLL+ GP P L P L T  A R A++ G+LAFQ               GGVA +G GAD++VAS H+++IG GEV+GP++GG +++L+P      C
Sbjct:    7 SLLMAGPSPALAPALVTRGAARGAISVGLLAFQ---------------GGVAGMGTGADDMVASAHAMSIGVGEVIGPMIGGFVVDLLPTSPAFAC 87          
BLAST of mRNA_P-wetherbeei_contig9570.1.1 vs. uniprot
Match: A0A4D9CM64_9STRA (MFS domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CM64_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 2.390e-12
Identity = 59/169 (34.91%), Postives = 82/169 (48.52%), Query Frame = 1
Query:    1 LSTHLEAALGTSPSTIGFVFILPSILYSVAAA-NAEALVDYRGVKRTMLWGFLILSASLLLHGPVPL--LEPLLPTPLAVRFAVAAGMLAFQA-GSALAVVPAFAAMQGGVAHLGRGADNI-------------VASIHSLAIGAGEVMGPVLGGIMMELMPKKRIIQC 456
            LS HL   L     +IG +F +PS+LYS+AA      L    G+K T+  G L +S   LL GP PL  L P LP P    +A+    LAF   GSAL VVPA   M   ++       +              +AS+++L    G+ +GP LGGI+ +++P    I C
Sbjct:  326 LSQHLLLLLNLPSLSIGLLFAVPSLLYSLAALFGVSHLTHLIGLKNTVTTGLLFVSLGFLLLGPAPLPFLPPSLPLPPPFLWALLLLSLAFIGLGSALVVVPAVPLMLHALSSPSSSLPSXXXXXPPPSNLKDRIASLYTLTWSIGDAVGPFLGGILTQILPSVEEIAC 494          
BLAST of mRNA_P-wetherbeei_contig9570.1.1 vs. uniprot
Match: UPI001D05F006 (MFS-type transporter SLC18B1-like isoform X1 n=2 Tax=Chrysoperla carnea TaxID=189513 RepID=UPI001D05F006)

HSP 1 Score: 54.7 bits (130), Expect = 8.460e-6
Identity = 48/148 (32.43%), Postives = 72/148 (48.65%), Query Frame = 1
Query:    1 LSTHLEAALGTSPSTIGFVFILPSILYSVAAANAEALVDYRGVKRTMLW-GFLILSASLLLHGPVPLLEPLLPTPLAVRFAVAAGMLAFQAGSALAVVPAF-----AAMQGGVAHLGRGADNIVASIHSLAIGAGEVMGPVLGGIMME 426
            L  HL   L  SP  IG +F+L S LY +++     L D      +M+  G L+ ++ LLL GP P L P L   + +      G+       AL ++P F     +A++GG         ++VA + S     GEV+GP LGGI++E
Sbjct:  320 LEPHLRG-LHLSPEKIGLIFLLFSALYGISSPAWGWLADKCNNHWSMMVIGLLLCTSGLLLLGPSPYLSPFLDRSIWLDLI---GLSILGISVALTLLPTFQRVLSSAVEGGFPD-SLSTCSLVAGLWSCMYALGEVLGPALGGILLE 462          
BLAST of mRNA_P-wetherbeei_contig9570.1.1 vs. uniprot
Match: A0A2J7RHL6_9NEOP (MFS domain-containing protein (Fragment) n=3 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7RHL6_9NEOP)

HSP 1 Score: 54.7 bits (130), Expect = 8.520e-6
Identity = 46/136 (33.82%), Postives = 69/136 (50.74%), Query Frame = 1
Query:   34 SPSTIGFVFILPSILYSVAAANAEALVDYRGVKRTML-WGFLILSASLLLHGPVPLLEPLLPTPLAVRFAVAAGMLAFQAGSALAVVPAFAAMQGGVAHLGRGAD----NIVASIHSLAIGAGEVMGPVLGGIMME 426
            SP  +G +F+L S LY + +     L D+     +M+ WG LI +  LLL GP PL+ P L   + +   VA  +L      AL ++P F A+       G   D    ++VA I S     GEV+GP +GG+++E
Sbjct:  347 SPEHVGLIFLLFSALYGIFSPIWGWLADHCNNHWSMMVWGLLICTVGLLLLGPSPLI-PFLTNTIWLNL-VALSILGISV--ALVLLPTFQAVLESAIEGGCSDDLSTYSLVAGIWSCMYSLGEVIGPSVGGVLLE 478          
BLAST of mRNA_P-wetherbeei_contig9570.1.1 vs. uniprot
Match: A0A6L2Q6R8_COPFO (MFS domain-containing protein n=1 Tax=Coptotermes formosanus TaxID=36987 RepID=A0A6L2Q6R8_COPFO)

HSP 1 Score: 54.7 bits (130), Expect = 8.550e-6
Identity = 49/137 (35.77%), Postives = 71/137 (51.82%), Query Frame = 1
Query:   34 SPSTIGFVFILPSILYSVAAANAEALVDYRGVKRTML-WGFLILSASLLLHGPVPLLEPLLPTPLAVRFAVAAGMLAFQAGSALAVVPAF-----AAMQGGVAHLGRGADNIVASIHSLAIGAGEVMGPVLGGIMME 426
            SP  IG +F+L S LY V +     L D      +M+ WG LI +  LLL GP PLL P L   + +   VA  +L      AL ++P F     +A++GG A       ++VA + S     GEV+GP +GG+++E
Sbjct:  358 SPEHIGLIFLLFSALYGVFSPIWGYLADRCNNHWSMMVWGLLICTIGLLLLGPSPLL-PFLTNTIWLNL-VALSILGISV--ALTLLPTFQAVLESAIEGGCAD-DLSTYSLVAGVWSCMYSLGEVIGPSVGGVLLE 489          
BLAST of mRNA_P-wetherbeei_contig9570.1.1 vs. uniprot
Match: A0A1W4WLT8_AGRPL (MFS-type transporter SLC18B1-like n=1 Tax=Agrilus planipennis TaxID=224129 RepID=A0A1W4WLT8_AGRPL)

HSP 1 Score: 51.6 bits (122), Expect = 9.810e-5
Identity = 44/147 (29.93%), Postives = 71/147 (48.30%), Query Frame = 1
Query:    1 LSTHLEAALGTSPSTIGFVFILPSILYSVAAANAEALVD-YRGVKRTMLWGFLILSASLLLHGPVPLLEPLLPTPLAVRFAVAAGMLAFQAGSALAVVPAFAAMQGGVAHLGRGAD----NIVASIHSLAIGAGEVMGPVLGGIMME 426
            L  HL       P  +G +F++ S +Y++ +     L D ++     M+WG ++ + SLL  GP P L P L + + +     +GM       ALA++P F  +  G    G        +IVA I S     GEV+GP +GGI+++
Sbjct:  311 LEPHLRQ-FNLQPEKVGLIFLMFSSIYAIFSPIWGWLCDRFQDHWSMMVWGLILNTISLLCVGPCPFL-PFLESSIWLNLLALSGM---GISVALALLPTFQCVLKGALASGFSESLATYSIVAGIWSSVYSLGEVVGPSVGGILLQ 452          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9570.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A836CL52_9STRA4.830e-4961.18Major facilitator superfamily domain-containing pr... [more]
D7G1X7_ECTSI2.020e-3246.05Major facilitator superfamily permease n=1 Tax=Ect... [more]
A0A6H5KPD6_9PHAE8.850e-1343.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9CM64_9STRA2.390e-1234.91MFS domain-containing protein n=1 Tax=Nannochlorop... [more]
UPI001D05F0068.460e-632.43MFS-type transporter SLC18B1-like isoform X1 n=2 T... [more]
A0A2J7RHL6_9NEOP8.520e-633.82MFS domain-containing protein (Fragment) n=3 Tax=C... [more]
A0A6L2Q6R8_COPFO8.550e-635.77MFS domain-containing protein n=1 Tax=Coptotermes ... [more]
A0A1W4WLT8_AGRPL9.810e-529.93MFS-type transporter SLC18B1-like n=1 Tax=Agrilus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9570contigP-wetherbeei_contig9570:68..523 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4787.PITG_19286T0
PFAMsMFS_1
Model size456
Max annot lvl4776|Peronosporales
Hectar predicted targeting categorysignal peptide
Exons1
Evalue4.97e-11
EggNOG OGsKOG3764@1|root,KOG3764@2759|Eukaryota,3Q7HR@4776|Peronosporales
Ec32 ortholog descriptionMajor facilitator superfamily
Ec32 orthologEc-07_003750.1
DescriptionMajor Facilitator Superfamily
Cds size456
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187099.4520824-CDS-P-wetherbeei_contig9570:67..5231683187099.4520824-CDS-P-wetherbeei_contig9570:67..523Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9570 68..523 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9570.1.1prot_P-wetherbeei_contig9570.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9570 68..523 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9570.1.1

>prot_P-wetherbeei_contig9570.1.1 ID=prot_P-wetherbeei_contig9570.1.1|Name=mRNA_P-wetherbeei_contig9570.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=152bp
LSTHLEAALGTSPSTIGFVFILPSILYSVAAANAEALVDYRGVKRTMLWG
FLILSASLLLHGPVPLLEPLLPTPLAVRFAVAAGMLAFQAGSALAVVPAF
AAMQGGVAHLGRGADNIVASIHSLAIGAGEVMGPVLGGIMMELMPKKRII
QC
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mRNA from alignment at P-wetherbeei_contig9570:68..523-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9570.1.1 ID=mRNA_P-wetherbeei_contig9570.1.1|Name=mRNA_P-wetherbeei_contig9570.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=456bp|location=Sequence derived from alignment at P-wetherbeei_contig9570:68..523- (Phaeothamnion wetherbeei SAG_119_79)
CTGTCGACGCATCTCGAGGCGGCGCTCGGCACCTCCCCCTCTACCATCGG CTTCGTCTTCATCCTCCCTTCTATCCTCTACTCCGTCGCCGCCGCCAACG CCGAGGCGCTGGTCGACTATCGTGGCGTGAAACGCACCATGCTCTGGGGC TTTCTCATCCTCTCGGCCAGCCTCCTGCTGCACGGGCCGGTGCCCTTGCT AGAGCCGCTGCTGCCGACGCCGCTCGCCGTCCGCTTCGCTGTCGCTGCCG GCATGCTGGCTTTCCAGGCGGGCTCGGCGCTGGCAGTGGTGCCGGCGTTC GCGGCAATGCAGGGCGGTGTCGCGCACCTGGGGCGAGGCGCCGACAACAT TGTGGCGTCGATCCACTCGCTGGCGATCGGCGCTGGGGAAGTCATGGGAC CCGTTCTGGGCGGCATCATGATGGAACTTATGCCCAAGAAGCGCATCATC CAGTGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9570:68..523-

>mRNA_P-wetherbeei_contig9570.1.1 ID=mRNA_P-wetherbeei_contig9570.1.1|Name=mRNA_P-wetherbeei_contig9570.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=456bp|location=Sequence derived from alignment at P-wetherbeei_contig9570:68..523- (Phaeothamnion wetherbeei SAG_119_79)
CTGTCGACGCATCTCGAGGCGGCGCTCGGCACCTCCCCCTCTACCATCGG
CTTCGTCTTCATCCTCCCTTCTATCCTCTACTCCGTCGCCGCCGCCAACG
CCGAGGCGCTGGTCGACTATCGTGGCGTGAAACGCACCATGCTCTGGGGC
TTTCTCATCCTCTCGGCCAGCCTCCTGCTGCACGGGCCGGTGCCCTTGCT
AGAGCCGCTGCTGCCGACGCCGCTCGCCGTCCGCTTCGCTGTCGCTGCCG
GCATGCTGGCTTTCCAGGCGGGCTCGGCGCTGGCAGTGGTGCCGGCGTTC
GCGGCAATGCAGGGCGGTGTCGCGCACCTGGGGCGAGGCGCCGACAACAT
TGTGGCGTCGATCCACTCGCTGGCGATCGGCGCTGGGGAAGTCATGGGAC
CCGTTCTGGGCGGCATCATGATGGAACTTATGCCCAAGAAGCGCATCATC
CAGTGC
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