mRNA_P-wetherbeei_contig957.3.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig957.3.2
Unique NamemRNA_P-wetherbeei_contig957.3.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig957.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig957contigP-wetherbeei_contig957:3990..7902 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size3569
Hectar predicted targeting categoryother localisation
Exons3
Cds size3333
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187099.3173735-CDS-P-wetherbeei_contig957:3989..43161683187099.3173735-CDS-P-wetherbeei_contig957:3989..4316Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig957 3990..4316 -
1683187099.3261704-CDS-P-wetherbeei_contig957:4523..74511683187099.3261704-CDS-P-wetherbeei_contig957:4523..7451Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig957 4524..7451 -
1683187099.3341882-CDS-P-wetherbeei_contig957:7590..76681683187099.3341882-CDS-P-wetherbeei_contig957:7590..7668Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig957 7591..7668 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187099.3551388-UTR-P-wetherbeei_contig957:7668..79021683187099.3551388-UTR-P-wetherbeei_contig957:7668..7902Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig957 7669..7902 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig957.3.2prot_P-wetherbeei_contig957.3.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig957 3990..7668 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig957.3.2

>prot_P-wetherbeei_contig957.3.2 ID=prot_P-wetherbeei_contig957.3.2|Name=mRNA_P-wetherbeei_contig957.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=1111bp
MGSATSNISRRNRAARDCGSSLAAVEARSCASIKQGKMRRLSGRRAPAKE
PRNAAAATPMPSHWAPDPGESNTETTSESLSSDIISPADTTDTTAISIGG
VAAVPRLWLPSPSAAMAAFLDDLDDPPSDPFDTVRDPSAAASAATVGDAV
TLERAGPRLAGAGSGFGTNTDASDGLQAPEVTPTPVLPLELPRAAEADLA
LYDAFDRPETPSPVSSRTLQRVAAASACAVTPAPTTPPWAAVGGSQSDVG
DCASVGAAEVTAFFGWGGQEMVPPPGAGSVSARGRSDTDTSVSGLALRHV
LKRPRVYNLDADAFDGASDATLGGGGGGTGGGGDCGGSACGSVCSGVGCT
GAGTKVRSLAEAAALALAADETDIDSPPARMDAFWFTPEQLQQPAAADAS
PVVAAVLSVRQGGGSASASSSSSISTNTTAMSGNRLVPSSNPAAAGAAGD
AGRANTTAMAAAAAGTPVGVAAAGTPAAKGSNSLTPRSLPPMHPPRQGAE
HNRVAAAAAAAAAAAPGAGGSNAAFATAGATMPARTSAGVAGRGNQQGVS
ALRRPGAGGLALAVGVFAHAAADLTGFGRGGGLQAQADAGEGDDPVADAV
NGGGVTAAAAATATAVPAAAVAPAAAVAMAVPAATAATAVMEVGEGVTPL
LLLDSPCKVLPGPFSPQTPSPLRYAGREFQDASFSNPPSPNDLRWSTADA
TGLHSLPPSWQKEVSAFPALASPYRGPQPVFGTKAVARAAALTAEGPPPF
ASIGRSATGMPPPATTRGSETWKGRVAESVSRLELAVARQTTTTVTSART
GSTAEVGSDSVAKAAAEVAAVTAVIVAEAVPAAAAATATATAMRGRTGSG
VRAPKEGPQEAWTGEDKQTALAASALPPQRSGQPPSSVAGLTVDVTAEPG
DLSIRRRFRRKGSAGANGKLKNGSGAAAAGSTAAGVELIQEKATPRLVLL
QASPDSVTGSPSSDGGSTNRRSGGSNSLSIKDRLTSFKPPTIEVTTSTRV
VPKQPRDAMAAMGTSRFAAGSPAMAFRTSSFRKAASRAAAANSAAGAAPA
TDTANAPVAATAGAGVVAALSATTPPPSGSTGEAATVPAARTAAGNSETQ
TAAEGAPRSNP
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mRNA from alignment at P-wetherbeei_contig957:3990..7902-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig957.3.2 ID=mRNA_P-wetherbeei_contig957.3.2|Name=mRNA_P-wetherbeei_contig957.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3913bp|location=Sequence derived from alignment at P-wetherbeei_contig957:3990..7902- (Phaeothamnion wetherbeei SAG_119_79)
AAGGAAAAGCGCTTGAATGGGTGCAACTGCCCTGGAAAGGAGAGTAGTTC
ACTCCTTTCTGCGCGCCAAAATCTACCTCTTTTCTGGTTGTGACCCGCAG
GCTGAGGAAAAACGCCGCCGCTCGGTCGCCAACAAAGTCTTTAGCAGCTG
CTGAAGCACAGGTTAATAAAAAGATGCCGCTCTCGCACTGACAGGACGTT
GAGCACGCCTGCGCACGCGCTCCTGCAAGAGCAAATGGGTAGCGCGACGA
GCAACATTTCCCGACGCAATCGTGCTGCTCGCGATTGTGGCTCGTCTCTT
GCCGCTGTAGAGGTGAGCTGAAGGAATCTCATCTCCTTTGCTTTTGCCTC
TGGAACTTGTCCTTTACCTCTTGATACGTAATTTTCAGCTTGCTCACCTG
AAAAAGTCTCATACCCTAGGTTTCCCTCCATGGCCGCTCCCTTTGTCGCA
GGCTCGCTCATGCGCCAGCATTAAGCAGGGTAAGATGCGCCGACTGAGTG
GCAGGCGCGCTCCTGCAAAGGAACCGCGTAATGCTGCGGCGGCAACGCCA
ATGCCTTCTCACTGGGCGCCGGACCCCGGCGAAAGCAACACGGAAACGAC
GTCCGAATCTCTTTCCTCCGACATTATATCCCCGGCCGACACGACGGACA
CGACTGCGATCAGTATTGGAGGTGTCGCCGCTGTTCCACGCTTGTGGCTG
CCATCGCCGTCGGCCGCAATGGCCGCCTTTTTGGACGACCTCGATGATCC
GCCCTCGGATCCCTTTGACACTGTCCGGGATCCTTCAGCGGCAGCCTCAG
CTGCTACGGTGGGCGATGCCGTGACGTTAGAACGTGCCGGGCCGCGCTTG
GCTGGCGCAGGCTCCGGCTTTGGCACAAACACTGACGCCAGCGACGGCCT
GCAGGCACCCGAAGTGACGCCGACGCCGGTATTGCCCCTGGAGCTTCCGC
GCGCGGCGGAGGCAGATCTTGCACTGTACGATGCCTTCGACCGGCCTGAG
ACGCCGTCGCCGGTGTCGTCACGGACACTGCAAAGGGTGGCAGCGGCCTC
CGCCTGTGCTGTCACACCTGCACCCACGACACCGCCATGGGCCGCCGTTG
GCGGTTCGCAGAGCGATGTCGGCGACTGCGCGAGTGTTGGCGCCGCGGAA
GTTACGGCGTTCTTCGGCTGGGGAGGGCAGGAGATGGTGCCACCCCCTGG
CGCTGGCAGCGTTTCGGCCCGCGGCCGTTCGGACACGGACACAAGCGTTT
CGGGGCTGGCGCTCCGTCACGTTTTGAAGCGGCCGAGGGTGTATAATCTT
GATGCCGACGCATTCGACGGCGCGTCGGATGCAACGCTCGGCGGTGGTGG
GGGCGGTACTGGTGGCGGTGGCGACTGCGGTGGCAGTGCGTGCGGCAGCG
TTTGCAGCGGCGTCGGCTGCACCGGTGCAGGTACCAAGGTGCGCTCGCTG
GCAGAGGCGGCCGCGCTGGCGCTGGCGGCAGACGAAACAGACATTGACTC
GCCGCCAGCAAGGATGGACGCTTTTTGGTTCACGCCGGAGCAGCTGCAGC
AGCCGGCGGCGGCGGACGCGTCGCCCGTGGTGGCCGCCGTTCTCAGCGTC
CGGCAAGGGGGCGGCAGCGCCAGCGCCAGCAGCAGCAGCAGCATTAGCAC
CAACACTACCGCTATGAGCGGCAACCGACTGGTGCCATCGTCCAATCCCG
CCGCCGCCGGTGCCGCCGGTGACGCCGGAAGAGCGAACACGACGGCGATG
GCAGCAGCTGCGGCGGGGACTCCTGTGGGAGTGGCGGCTGCGGGGACACC
GGCTGCAAAGGGTTCTAACAGCTTGACGCCGCGTTCGCTGCCCCCGATGC
ACCCGCCACGGCAGGGTGCAGAGCACAACAGAGTAGCCGCAGCCGCTGCC
GCTGCGGCCGCCGCGGCACCGGGTGCCGGGGGCTCTAACGCCGCGTTCGC
AACCGCCGGTGCCACGATGCCTGCCAGAACCTCCGCCGGGGTGGCGGGGA
GAGGCAACCAACAGGGCGTCTCAGCCCTGAGACGCCCTGGCGCCGGTGGG
CTCGCGCTCGCAGTGGGCGTCTTTGCGCATGCTGCTGCTGACCTTACTGG
CTTTGGCCGCGGCGGCGGGCTCCAGGCACAAGCCGATGCCGGCGAGGGCG
ATGACCCCGTCGCCGACGCGGTGAACGGTGGCGGAGTGACGGCAGCGGCA
GCGGCGACAGCAACGGCGGTGCCGGCAGCAGCGGTGGCGCCGGCAGCCGC
TGTGGCAATGGCGGTGCCCGCGGCCACAGCGGCCACAGCAGTTATGGAGG
TTGGGGAGGGAGTGACGCCACTGCTGCTGCTGGATTCTCCCTGCAAAGTG
CTGCCGGGGCCCTTCTCGCCCCAGACGCCATCGCCGCTACGATACGCCGG
GAGGGAGTTCCAGGATGCCTCCTTCTCCAACCCGCCGTCGCCCAACGACC
TGCGCTGGTCCACGGCGGATGCGACTGGCCTGCACTCGCTGCCGCCGTCG
TGGCAGAAGGAAGTATCAGCTTTTCCGGCGTTGGCGTCACCTTACAGAGG
GCCACAGCCAGTTTTTGGAACAAAGGCCGTGGCAAGAGCGGCTGCGCTGA
CGGCGGAAGGGCCGCCGCCGTTCGCGTCCATCGGGCGGTCGGCAACAGGT
ATGCCACCACCAGCTACGACGCGGGGGAGCGAAACGTGGAAGGGCCGCGT
GGCCGAATCCGTCAGCCGTCTGGAGTTGGCCGTTGCTCGCCAGACCACAA
CTACGGTGACATCAGCAAGAACCGGCTCGACTGCGGAAGTTGGGTCAGAT
TCCGTCGCTAAGGCGGCGGCGGAAGTGGCGGCGGTGACGGCAGTGATAGT
GGCGGAGGCGGTGCCGGCGGCGGCGGCGGCGACGGCGACGGCGACCGCAA
TGCGAGGGCGGACTGGCTCAGGCGTTCGTGCCCCTAAGGAAGGACCGCAG
GAGGCGTGGACGGGTGAAGACAAACAGACCGCGCTCGCTGCGTCGGCACT
GCCGCCGCAGCGGTCCGGGCAGCCGCCGTCCAGCGTGGCGGGGCTCACTG
TCGATGTGACTGCAGAGCCAGGCGACCTGTCGATCCGCCGGCGCTTTAGA
CGAAAAGGAAGCGCCGGTGCCAACGGCAAGCTCAAGAACGGCAGCGGCGC
TGCCGCCGCGGGTTCCACTGCTGCAGGCGTCGAGCTGATCCAAGAGAAGG
CGACGCCGCGGCTGGTGCTGCTGCAGGCGTCGCCGGACAGCGTGACGGGT
TCGCCGAGCAGCGACGGCGGCAGCACAAACCGGCGGAGCGGCGGCAGCAA
CAGCCTCAGCATCAAGGACCGGCTCACGTCCTTCAAACCGCCAACCATCG
AAGTTACTACGTCGACACGTGTTGTGCCGGTGAGTCGTTTTTTGAAACGC
TGGTTGTCAGCAGTGCTTCGCAGCATCCCCATGTCGCATAAATCCGACCA
GCATTGCTGCCACAATTAGGTTTTCTGGCCGATTTGGGCTTCACGGCAGA
TCCTACTCGCCTGAGCCCTGGCCGGATTGATGCTGAGTAAATTTTGACCT
TGAATGTGGCCTCTCGTTGCTGAAACTTCTCGGCAGAAACAGCCTCGCGA
CGCGATGGCGGCAATGGGAACGTCCAGGTTCGCCGCCGGCAGCCCTGCCA
TGGCCTTCCGGACGTCTTCCTTCAGAAAAGCTGCCTCGCGGGCGGCTGCA
GCGAATTCCGCGGCGGGAGCAGCGCCGGCAACAGACACGGCAAATGCTCC
GGTGGCAGCGACGGCGGGGGCCGGCGTGGTAGCTGCGTTGTCGGCGACGA
CGCCGCCGCCGTCGGGCTCAACCGGGGAGGCGGCGACAGTACCGGCCGCA
CGGACTGCGGCAGGCAATTCAGAAACTCAGACTGCCGCTGAAGGCGCACC
GCGTTCGAACCCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig957:3990..7902-

>mRNA_P-wetherbeei_contig957.3.2 ID=mRNA_P-wetherbeei_contig957.3.2|Name=mRNA_P-wetherbeei_contig957.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=3333bp|location=Sequence derived from alignment at P-wetherbeei_contig957:3990..7902- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGTAGCGCGACGAGCAACATTTCCCGACGCAATCGTGCTGCTCGCGA
TTGTGGCTCGTCTCTTGCCGCTGTAGAGGCTCGCTCATGCGCCAGCATTA
AGCAGGGTAAGATGCGCCGACTGAGTGGCAGGCGCGCTCCTGCAAAGGAA
CCGCGTAATGCTGCGGCGGCAACGCCAATGCCTTCTCACTGGGCGCCGGA
CCCCGGCGAAAGCAACACGGAAACGACGTCCGAATCTCTTTCCTCCGACA
TTATATCCCCGGCCGACACGACGGACACGACTGCGATCAGTATTGGAGGT
GTCGCCGCTGTTCCACGCTTGTGGCTGCCATCGCCGTCGGCCGCAATGGC
CGCCTTTTTGGACGACCTCGATGATCCGCCCTCGGATCCCTTTGACACTG
TCCGGGATCCTTCAGCGGCAGCCTCAGCTGCTACGGTGGGCGATGCCGTG
ACGTTAGAACGTGCCGGGCCGCGCTTGGCTGGCGCAGGCTCCGGCTTTGG
CACAAACACTGACGCCAGCGACGGCCTGCAGGCACCCGAAGTGACGCCGA
CGCCGGTATTGCCCCTGGAGCTTCCGCGCGCGGCGGAGGCAGATCTTGCA
CTGTACGATGCCTTCGACCGGCCTGAGACGCCGTCGCCGGTGTCGTCACG
GACACTGCAAAGGGTGGCAGCGGCCTCCGCCTGTGCTGTCACACCTGCAC
CCACGACACCGCCATGGGCCGCCGTTGGCGGTTCGCAGAGCGATGTCGGC
GACTGCGCGAGTGTTGGCGCCGCGGAAGTTACGGCGTTCTTCGGCTGGGG
AGGGCAGGAGATGGTGCCACCCCCTGGCGCTGGCAGCGTTTCGGCCCGCG
GCCGTTCGGACACGGACACAAGCGTTTCGGGGCTGGCGCTCCGTCACGTT
TTGAAGCGGCCGAGGGTGTATAATCTTGATGCCGACGCATTCGACGGCGC
GTCGGATGCAACGCTCGGCGGTGGTGGGGGCGGTACTGGTGGCGGTGGCG
ACTGCGGTGGCAGTGCGTGCGGCAGCGTTTGCAGCGGCGTCGGCTGCACC
GGTGCAGGTACCAAGGTGCGCTCGCTGGCAGAGGCGGCCGCGCTGGCGCT
GGCGGCAGACGAAACAGACATTGACTCGCCGCCAGCAAGGATGGACGCTT
TTTGGTTCACGCCGGAGCAGCTGCAGCAGCCGGCGGCGGCGGACGCGTCG
CCCGTGGTGGCCGCCGTTCTCAGCGTCCGGCAAGGGGGCGGCAGCGCCAG
CGCCAGCAGCAGCAGCAGCATTAGCACCAACACTACCGCTATGAGCGGCA
ACCGACTGGTGCCATCGTCCAATCCCGCCGCCGCCGGTGCCGCCGGTGAC
GCCGGAAGAGCGAACACGACGGCGATGGCAGCAGCTGCGGCGGGGACTCC
TGTGGGAGTGGCGGCTGCGGGGACACCGGCTGCAAAGGGTTCTAACAGCT
TGACGCCGCGTTCGCTGCCCCCGATGCACCCGCCACGGCAGGGTGCAGAG
CACAACAGAGTAGCCGCAGCCGCTGCCGCTGCGGCCGCCGCGGCACCGGG
TGCCGGGGGCTCTAACGCCGCGTTCGCAACCGCCGGTGCCACGATGCCTG
CCAGAACCTCCGCCGGGGTGGCGGGGAGAGGCAACCAACAGGGCGTCTCA
GCCCTGAGACGCCCTGGCGCCGGTGGGCTCGCGCTCGCAGTGGGCGTCTT
TGCGCATGCTGCTGCTGACCTTACTGGCTTTGGCCGCGGCGGCGGGCTCC
AGGCACAAGCCGATGCCGGCGAGGGCGATGACCCCGTCGCCGACGCGGTG
AACGGTGGCGGAGTGACGGCAGCGGCAGCGGCGACAGCAACGGCGGTGCC
GGCAGCAGCGGTGGCGCCGGCAGCCGCTGTGGCAATGGCGGTGCCCGCGG
CCACAGCGGCCACAGCAGTTATGGAGGTTGGGGAGGGAGTGACGCCACTG
CTGCTGCTGGATTCTCCCTGCAAAGTGCTGCCGGGGCCCTTCTCGCCCCA
GACGCCATCGCCGCTACGATACGCCGGGAGGGAGTTCCAGGATGCCTCCT
TCTCCAACCCGCCGTCGCCCAACGACCTGCGCTGGTCCACGGCGGATGCG
ACTGGCCTGCACTCGCTGCCGCCGTCGTGGCAGAAGGAAGTATCAGCTTT
TCCGGCGTTGGCGTCACCTTACAGAGGGCCACAGCCAGTTTTTGGAACAA
AGGCCGTGGCAAGAGCGGCTGCGCTGACGGCGGAAGGGCCGCCGCCGTTC
GCGTCCATCGGGCGGTCGGCAACAGGTATGCCACCACCAGCTACGACGCG
GGGGAGCGAAACGTGGAAGGGCCGCGTGGCCGAATCCGTCAGCCGTCTGG
AGTTGGCCGTTGCTCGCCAGACCACAACTACGGTGACATCAGCAAGAACC
GGCTCGACTGCGGAAGTTGGGTCAGATTCCGTCGCTAAGGCGGCGGCGGA
AGTGGCGGCGGTGACGGCAGTGATAGTGGCGGAGGCGGTGCCGGCGGCGG
CGGCGGCGACGGCGACGGCGACCGCAATGCGAGGGCGGACTGGCTCAGGC
GTTCGTGCCCCTAAGGAAGGACCGCAGGAGGCGTGGACGGGTGAAGACAA
ACAGACCGCGCTCGCTGCGTCGGCACTGCCGCCGCAGCGGTCCGGGCAGC
CGCCGTCCAGCGTGGCGGGGCTCACTGTCGATGTGACTGCAGAGCCAGGC
GACCTGTCGATCCGCCGGCGCTTTAGACGAAAAGGAAGCGCCGGTGCCAA
CGGCAAGCTCAAGAACGGCAGCGGCGCTGCCGCCGCGGGTTCCACTGCTG
CAGGCGTCGAGCTGATCCAAGAGAAGGCGACGCCGCGGCTGGTGCTGCTG
CAGGCGTCGCCGGACAGCGTGACGGGTTCGCCGAGCAGCGACGGCGGCAG
CACAAACCGGCGGAGCGGCGGCAGCAACAGCCTCAGCATCAAGGACCGGC
TCACGTCCTTCAAACCGCCAACCATCGAAGTTACTACGTCGACACGTGTT
GTGCCGAAACAGCCTCGCGACGCGATGGCGGCAATGGGAACGTCCAGGTT
CGCCGCCGGCAGCCCTGCCATGGCCTTCCGGACGTCTTCCTTCAGAAAAG
CTGCCTCGCGGGCGGCTGCAGCGAATTCCGCGGCGGGAGCAGCGCCGGCA
ACAGACACGGCAAATGCTCCGGTGGCAGCGACGGCGGGGGCCGGCGTGGT
AGCTGCGTTGTCGGCGACGACGCCGCCGCCGTCGGGCTCAACCGGGGAGG
CGGCGACAGTACCGGCCGCACGGACTGCGGCAGGCAATTCAGAAACTCAG
ACTGCCGCTGAAGGCGCACCGCGTTCGAACCCT
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