mRNA_P-wetherbeei_contig957.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig957.2.1
Unique NamemRNA_P-wetherbeei_contig957.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig957.2.1 vs. uniprot
Match: D7FNM4_ECTSI (Mitogen-activated protein kinase kinase (MAP2K) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNM4_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 4.300e-14
Identity = 76/227 (33.48%), Postives = 108/227 (47.58%), Query Frame = 1
Query:  163 GADHCGGTTKLKAAADVFRPRRTRVPSNVSSLD---DDDWVPVSDDD---LSLELSPRQKRPSLSVHLNSRADD--SYEFTRSGGINLNGFGLEIRETGLGRRPRWG--GLHGRVGGFSAA----------------FGGGGYXXXXXXXXXFSEHASHVVAGGGHGVPMRERLAVLCKLGQGATGVVYKAFDLAELRVVALKVVPVFDRVKRRQMLHELRALHDTL 765
            G  H G  T ++ +    R  R  +    S  D   DD+W+ VSDD+     LE S    R S S+ LN+      SY +T  G I L+GF   I ++GL     W   G  G     SAA                    G           +  A+ V  G     PM ER+ +L ++G+G TGVVY+AFDL +L +VA+K++PV D+ KRRQ++HE+ +L+D L
Sbjct:  232 GRQHGGCATGVETSQCRKRSMRQNIGRMSSCSDWVHDDEWLEVSDDESCSTGLEPSTSSPRHSKSLSLNTALGTAASYRYTPKGEILLSGFQSPIPQSGL-MAAAWQAEGTQGDAVVSSAAAATISDGRDANLLADVLNDAGGRAATVGGSTVAAAAAEVAIGTMVLTPMIERVVLLGRVGEGETGVVYRAFDLLDLSLVAVKMIPVNDQKKRRQLVHEVSSLYDRL 457          
BLAST of mRNA_P-wetherbeei_contig957.2.1 vs. uniprot
Match: A0A8J2SNV7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SNV7_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 5.120e-14
Identity = 65/184 (35.33%), Postives = 85/184 (46.20%), Query Frame = 1
Query:  259 DDDDWVPV--SDDDLSLELSPRQKRPSL-------------SVHLNSRADDSYEFTRSGGINLNGFGLEIRETGLGRRPRWGGLHGRVGGFSAAFGGGGYXXXXXXXXXFSEHASHVVAGGGHGVPMRERLAVLCKLGQGATGVVYKAFDLAELRVVALKVVPVFDRVKRRQMLHELRALHDTL 765
            D+ DW+ V  SD + S + S    R SL             SV + ++ D+S+ FTRSG I L+G   +IR+ GL   P                                             VP+ +R+ VL KLGQGA G V+KA DL  LR VA+K +PV  R KRRQM+HEL+ALH  L
Sbjct:  137 DEADWIQVDESDHNESEDESVSSARASLLRRGRFSNGSFKRSVEVTTQ-DESFYFTRSGAIRLDGVADKIRDCGLESTPE------------------------------------------ESVPVTDRVVVLEKLGQGAAGRVHKALDLKNLRYVAMKAIPVVQRDKRRQMVHELKALHGAL 277          
BLAST of mRNA_P-wetherbeei_contig957.2.1 vs. uniprot
Match: A0A7S2PQG1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PQG1_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 6.020e-13
Identity = 57/174 (32.76%), Postives = 86/174 (49.43%), Query Frame = 1
Query:  262 DDDWVPVSDDD----LSLELSPRQKRPSLSV--HLNSRADDSYEFTRSGGINLNGFGLEIRETGLGRRPRWGGLHGRVGGFSAAFGGGGYXXXXXXXXXFSEHASHVVAGGGHGVPMRERLAVLCKLGQGATGVVYKAFDLAELRVVALKVVPVFDRVKRRQMLHELRALHDTL 765
            D+DW+ VSDD+    L+   S R K P + +  H +     SY FT SG + ++GFG  I   G+           ++G   +  G                            + MR+RL  LCKLG+GA+G V+KA DL  L++VA+K++ + D+ KRRQ++ EL  LH+ L
Sbjct:  269 DEDWISVSDDENDDSLAFSSSLRIKPPKIHLPCHHHFGRKGSYTFTNSGTLWVDGFGKAITNRGI-----------KLG--QSPLGS---------------------------IAMRDRLVFLCKLGEGASGTVFKALDLCSLKLVAVKIISIADKRKRRQIVSELANLHELL 402          
BLAST of mRNA_P-wetherbeei_contig957.2.1 vs. uniprot
Match: A0A7S2LQJ8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LQJ8_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 6.540e-13
Identity = 57/174 (32.76%), Postives = 86/174 (49.43%), Query Frame = 1
Query:  262 DDDWVPVSDDD----LSLELSPRQKRPSLSV--HLNSRADDSYEFTRSGGINLNGFGLEIRETGLGRRPRWGGLHGRVGGFSAAFGGGGYXXXXXXXXXFSEHASHVVAGGGHGVPMRERLAVLCKLGQGATGVVYKAFDLAELRVVALKVVPVFDRVKRRQMLHELRALHDTL 765
            D+DW+ VSDD+    L+   S R K P + +  H +     SY FT SG + ++GFG  I   G+           ++G   +  G                            + MR+RL  LCKLG+GA+G V+KA DL  L++VA+K++ + D+ KRRQ++ EL  LH+ L
Sbjct:  524 DEDWISVSDDENDDSLAFSSSLRIKPPKIHLPCHHHFGRKGSYTFTNSGTLWVDGFGKAITNRGI-----------KLG--QSPLGS---------------------------IAMRDRLVFLCKLGEGASGTVFKALDLCSLKLVAVKIISIADKRKRRQIVSELANLHELL 657          
BLAST of mRNA_P-wetherbeei_contig957.2.1 vs. uniprot
Match: A0A7S3NHU7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NHU7_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.260e-10
Identity = 35/61 (57.38%), Postives = 47/61 (77.05%), Query Frame = 1
Query:  592 MRERLAVLCKLGQGATGVVYKAFDLAELRVVALKVVPVFDRVKRRQMLHELRALHDTLARP 774
            M +R  +L KLGQGA+G V KAFDL ELR+VA+K + + ++ KRRQM+ ELRALH +L+ P
Sbjct:   34 MTDRFIILEKLGQGASGKVNKAFDLHELRLVAMKSISITEKSKRRQMVRELRALHKSLSNP 94          
BLAST of mRNA_P-wetherbeei_contig957.2.1 vs. uniprot
Match: A0A7S4NEJ3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NEJ3_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.620e-6
Identity = 32/76 (42.11%), Postives = 47/76 (61.84%), Query Frame = 1
Query:  217 RPRRTRVPSNVSSLDDDDWVPVSDDD--LSLELSPRQKRPSLSVHLNSRADDSYEFTRSGGINLNGFGLEIRETGL 438
            +P RT + +   + +++DW  VSDDD   S+  SPRQ RP+LS++      +SY FT SG I ++GFG +I   GL
Sbjct:    7 KPSRT-IETGGCAFENEDWEYVSDDDECCSIATSPRQMRPTLSLNDPCLQQESYRFTESGSIWIDGFGAKITRDGL 81          
BLAST of mRNA_P-wetherbeei_contig957.2.1 vs. uniprot
Match: A0A1V9Z738_9STRA (Mitogen-activated protein kinase kinase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z738_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 5.170e-6
Identity = 49/170 (28.82%), Postives = 79/170 (46.47%), Query Frame = 1
Query:  280 VSDDDLSLELSPRQKRPS--LSVHLNSRADD------SYEFTRSGGINLNGFGLEIRETGLGRRPRWGGLHGRVGGFSAAFGGGGYXXXXXXXXXFSEHASHVVAGGGHGVPMRERLAVLCKLGQGATGVVYKAFDLAELRVVALKVVPVFDRVKRRQMLHELRALHDTL 765
            +S D    + SP ++RP+  L + LN+ A D      S++FT  G +  +GF  +I   G+ R P                              F    + ++         ++ L +L +LG GA+G VYKA  L   ++VA+KV+ V+D+ KR QML EL++L+  L
Sbjct:  356 ISADASPYKSSPAKRRPTVELGLDLNTVAHDARHLNASFDFTAEGRLQTHGF--DINTDGIARTP------------------------------FQPRPATLLG-------TKDSLVLLHELGHGASGKVYKALYLPTFKLVAVKVIRVYDQKKRHQMLRELKSLYGNL 486          
BLAST of mRNA_P-wetherbeei_contig957.2.1 vs. uniprot
Match: A0A6A4Z9F3_9STRA (Protein kinase domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z9F3_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 5.150e-5
Identity = 26/54 (48.15%), Postives = 40/54 (74.07%), Query Frame = 1
Query:  595 RERLAVLCKLGQGATGVVYKAFDLAELRVVALKVVPVFDRVKRRQMLHELRALH 756
            +E L +L +LG GA+G VYKA  L   ++VA+K++ V+D+ KR QML EL++L+
Sbjct:    7 KESLVLLNELGHGASGKVYKALYLPTFKLVAVKIIRVYDQKKRHQMLRELKSLY 60          
BLAST of mRNA_P-wetherbeei_contig957.2.1 vs. uniprot
Match: A0A067BM72_SAPPC (Ste/ste7/ste7-unclassified protein kinase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BM72_SAPPC)

HSP 1 Score: 55.1 bits (131), Expect = 6.970e-5
Identity = 42/157 (26.75%), Postives = 71/157 (45.22%), Query Frame = 1
Query:  310 SPRQKRPSLSV--------HLNSRADDSYEFTRSGGINLNGFGLEIRETGLGRRPRWGGLHGRVGGFSAAFGGGGYXXXXXXXXXFSEHASHVVAGGGHGVPMRERLAVLCKLGQGATGVVYKAFDLAELRVVALKVVPVFDRVKRRQMLHELRALH 756
            SP ++RP++ +        H     + S++FT  G +  +GF  +I   G+ R P                              F    + ++         ++ L +L +LG GA+G VYKA  L   ++VA+KV+ V+D+ KR QML EL++L+
Sbjct:  321 SPAKRRPAMDLGLDLNKVAHEEKHLNASFDFTAEGRLQTHGF--DINTEGISRTP------------------------------FQPVTTTLLG-------TKDSLVILHELGHGASGKVYKALYLPTFKLVAVKVIRVYDQKKRHQMLRELKSLY 438          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig957.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FNM4_ECTSI4.300e-1433.48Mitogen-activated protein kinase kinase (MAP2K) n=... [more]
A0A8J2SNV7_9STRA5.120e-1435.33Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2PQG1_9STRA6.020e-1332.76Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2LQJ8_9STRA6.540e-1332.76Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S3NHU7_9STRA1.260e-1057.38Hypothetical protein (Fragment) n=1 Tax=Aureoumbra... [more]
A0A7S4NEJ3_9STRA1.620e-642.11Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A1V9Z738_9STRA5.170e-628.82Mitogen-activated protein kinase kinase n=1 Tax=Ac... [more]
A0A6A4Z9F3_9STRA5.150e-548.15Protein kinase domain-containing protein n=1 Tax=A... [more]
A0A067BM72_SAPPC6.970e-526.75Ste/ste7/ste7-unclassified protein kinase n=2 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig957contigP-wetherbeei_contig957:2742..3878 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FNM4
PFAMsPkinase
Model size844
Max annot lvl2759|Eukaryota
KEGG koko:K20607
KEGG Pathwayko04016,ko05418,map04016,map05418
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.04e-15
EggNOG OGsKOG0581@1|root,KOG0581@2759|Eukaryota
EC2.7.12.2
DescriptionMAP kinase kinase activity
Cds size843
COG categoryG
BRITEko00000,ko00001,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187099.3860795-CDS-P-wetherbeei_contig957:2741..33051683187099.3860795-CDS-P-wetherbeei_contig957:2741..3305Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig957 2742..3305 -
1683187099.398842-CDS-P-wetherbeei_contig957:3599..38781683187099.398842-CDS-P-wetherbeei_contig957:3599..3878Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig957 3600..3878 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig957.2.1prot_P-wetherbeei_contig957.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig957 2742..3878 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig957.2.1

>prot_P-wetherbeei_contig957.2.1 ID=prot_P-wetherbeei_contig957.2.1|Name=mRNA_P-wetherbeei_contig957.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=281bp
GRRRSPPRRRASPPRRGTSPNRRSSGSPPKRREGDAASVVLAAASQPRQG
VGGRGADHCGGTTKLKAAADVFRPRRTRVPSNVSSLDDDDWVPVSDDDLS
LELSPRQKRPSLSVHLNSRADDSYEFTRSGGINLNGFGLEIRETGLGRRP
RWGGLHGRVGGFSAAFGGGGYGGGGYGGGGFSEHASHVVAGGGHGVPMRE
RLAVLCKLGQGATGVVYKAFDLAELRVVALKVVPVFDRVKRRQMLHELRA
LHDTLARPQAPRPSAPPRPAGVFGTGTGAGA
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mRNA from alignment at P-wetherbeei_contig957:2742..3878-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig957.2.1 ID=mRNA_P-wetherbeei_contig957.2.1|Name=mRNA_P-wetherbeei_contig957.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1137bp|location=Sequence derived from alignment at P-wetherbeei_contig957:2742..3878- (Phaeothamnion wetherbeei SAG_119_79)
GGGCGGCGACGCTCGCCGCCACGGCGTCGCGCCAGCCCGCCGCGGCGCGG CACCAGCCCCAACCGCAGGAGTAGCGGCAGCCCCCCGAAGCGTCGCGAGG GAGATGCCGCCAGCGTGGTGCTGGCGGCAGCCTCGCAGCCGCGACAGGGG GTTGGCGGCCGGGGCGCCGACCACTGCGGCGGAACCACGAAGCTCAAAGC AGCGGCGGATGTCTTTCGACCGCGTAGGACTCGTGTTCCCAGCAACGTCT CGTCTTTGGATGATGATGATTGGGTGCCGGTACGTCTCTTTCTCTTTTTT CTAAACCTGTTGTTGGTTCTAATGAACCTTTGCTCCTTTTTCTTTCATTA TAACTTGTTCCTTTAGTAACGGAAAGCTCCCGTCGAACTAGCATTTAGGT CATATGGTTCAAATCTTCTGCGTTTGCAGGCGCGCGTTTCCTCCCTCATT CGCTCTTCATTTCTTCAACCTTTTCTGCTCTCGTCCTTCGTCCCTTTCAT CCTTTCTCCCATCCTCCCTTCCGAACCGATTTGAATTGCTGGCACGATAC AATGCGGCAACAAGCGCCTGCAGGTGAGTGACGACGACTTGTCGCTGGAG CTAAGCCCGCGGCAGAAGCGGCCGTCGCTGTCGGTGCATCTCAACTCGCG CGCCGACGACAGCTACGAGTTCACCCGCTCCGGCGGCATCAACCTCAACG GCTTCGGCCTTGAGATCCGCGAAACGGGCCTGGGCCGCCGCCCGCGCTGG GGTGGCCTGCACGGCCGCGTCGGCGGCTTCAGCGCCGCGTTCGGCGGTGG CGGTTACGGCGGCGGCGGTTACGGAGGCGGCGGGTTCAGCGAGCATGCCA GCCACGTGGTGGCGGGCGGCGGGCACGGTGTGCCGATGCGGGAACGGCTG GCGGTGCTGTGCAAGCTGGGTCAGGGCGCTACGGGGGTCGTCTACAAGGC GTTCGACCTGGCGGAGCTGCGCGTCGTCGCCCTCAAGGTCGTGCCCGTCT TCGACCGCGTCAAGCGCCGCCAGATGCTGCACGAGCTGCGGGCGCTCCAT GACACGCTGGCGCGGCCGCAGGCGCCGCGGCCGTCGGCGCCGCCGCGGCC GGCGGGGGTTTTTGGCACGGGCACAGGAGCGGGAGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig957:2742..3878-

>mRNA_P-wetherbeei_contig957.2.1 ID=mRNA_P-wetherbeei_contig957.2.1|Name=mRNA_P-wetherbeei_contig957.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=843bp|location=Sequence derived from alignment at P-wetherbeei_contig957:2742..3878- (Phaeothamnion wetherbeei SAG_119_79)
GGGCGGCGACGCTCGCCGCCACGGCGTCGCGCCAGCCCGCCGCGGCGCGG
CACCAGCCCCAACCGCAGGAGTAGCGGCAGCCCCCCGAAGCGTCGCGAGG
GAGATGCCGCCAGCGTGGTGCTGGCGGCAGCCTCGCAGCCGCGACAGGGG
GTTGGCGGCCGGGGCGCCGACCACTGCGGCGGAACCACGAAGCTCAAAGC
AGCGGCGGATGTCTTTCGACCGCGTAGGACTCGTGTTCCCAGCAACGTCT
CGTCTTTGGATGATGATGATTGGGTGCCGGTGAGTGACGACGACTTGTCG
CTGGAGCTAAGCCCGCGGCAGAAGCGGCCGTCGCTGTCGGTGCATCTCAA
CTCGCGCGCCGACGACAGCTACGAGTTCACCCGCTCCGGCGGCATCAACC
TCAACGGCTTCGGCCTTGAGATCCGCGAAACGGGCCTGGGCCGCCGCCCG
CGCTGGGGTGGCCTGCACGGCCGCGTCGGCGGCTTCAGCGCCGCGTTCGG
CGGTGGCGGTTACGGCGGCGGCGGTTACGGAGGCGGCGGGTTCAGCGAGC
ATGCCAGCCACGTGGTGGCGGGCGGCGGGCACGGTGTGCCGATGCGGGAA
CGGCTGGCGGTGCTGTGCAAGCTGGGTCAGGGCGCTACGGGGGTCGTCTA
CAAGGCGTTCGACCTGGCGGAGCTGCGCGTCGTCGCCCTCAAGGTCGTGC
CCGTCTTCGACCGCGTCAAGCGCCGCCAGATGCTGCACGAGCTGCGGGCG
CTCCATGACACGCTGGCGCGGCCGCAGGCGCCGCGGCCGTCGGCGCCGCC
GCGGCCGGCGGGGGTTTTTGGCACGGGCACAGGAGCGGGAGCG
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