mRNA_P-wetherbeei_contig9558.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9558.2.1
Unique NamemRNA_P-wetherbeei_contig9558.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9558.2.1 vs. uniprot
Match: A0A521VHG2_9PROT (ABC transporter ATP-binding protein n=3 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A521VHG2_9PROT)

HSP 1 Score: 407 bits (1045), Expect = 5.760e-139
Identity = 203/231 (87.88%), Postives = 212/231 (91.77%), Query Frame = 2
Query:  677 MLEVRDLHAYYGKSHILHGVHLKVGTGEIVSLLGRNGVGRSTTIKAIMGMVDCSGSVTFRGEEMVGLKAYQVAHKGLGYVPENRDIFPSLTVRQNLQLGQKGKLESERWGLEDMFQIFPRLKERADTEAGVLSGGEQQMLTLCRTLMGDPSLVMIDEPTEGLAPKIVEQVARLFEEIRKRGVSILLVEQKLAIALDISERLYVMGHGHIVFEGRPRDVRENAAMRKEWLEV 1369
            MLEVRDLHAYYGKSHILHGVHL VG GEIVSLLGRNGVGRSTTIKAIMGMVDC GSV F+GEE+VG K Y++AHKGLGYVPE+RDIFP+LTVRQNL LGQK    S RW  EDMFQ+FPRL+ERADTEAG LSGGEQQMLTLCRTLMGDP LVMIDEPTEGLAPKIVEQVA LFEEIR+RGVSILLVEQKLAIALDISERLYVMGHG IVFEG PRDVRENAAMRKEWLEV
Sbjct:    1 MLEVRDLHAYYGKSHILHGVHLTVGDGEIVSLLGRNGVGRSTTIKAIMGMVDCQGSVKFKGEELVGHKTYEIAHKGLGYVPESRDIFPTLTVRQNLLLGQKNTRSSGRWQAEDMFQLFPRLRERADTEAGFLSGGEQQMLTLCRTLMGDPELVMIDEPTEGLAPKIVEQVANLFEEIRRRGVSILLVEQKLAIALDISERLYVMGHGAIVFEGAPRDVRENAAMRKEWLEV 231          
BLAST of mRNA_P-wetherbeei_contig9558.2.1 vs. uniprot
Match: A0A1F3YBG5_9PROT (ABC transporter ATP-binding protein n=1 Tax=Betaproteobacteria bacterium RBG_16_66_20 TaxID=1797479 RepID=A0A1F3YBG5_9PROT)

HSP 1 Score: 393 bits (1010), Expect = 1.170e-133
Identity = 197/231 (85.28%), Postives = 208/231 (90.04%), Query Frame = 2
Query:  677 MLEVRDLHAYYGKSHILHGVHLKVGTGEIVSLLGRNGVGRSTTIKAIMGMVDCSGSVTFRGEEMVGLKAYQVAHKGLGYVPENRDIFPSLTVRQNLQLGQKGKLESERWGLEDMFQIFPRLKERADTEAGVLSGGEQQMLTLCRTLMGDPSLVMIDEPTEGLAPKIVEQVARLFEEIRKRGVSILLVEQKLAIALDISERLYVMGHGHIVFEGRPRDVRENAAMRKEWLEV 1369
            MLEVRDLHAYYGKSHILHGV L VG GEIVSLLGRNGVGRSTTIKAIMGMVDC GSV F GEE++G K Y +AHKGLGYVPENRDIFP+LTVRQNL LG+K      RW  EDM+++FPRLKERADT AGVLSGGEQQMLTLCRTLMGDP+LVMIDEPTEGLAPKIVEQVA LF+EIR+RGVSILLVEQKLAIALDISERLYVMGHG IVFEG PRDVR NAAMRKEWLEV
Sbjct:    1 MLEVRDLHAYYGKSHILHGVQLSVGAGEIVSLLGRNGVGRSTTIKAIMGMVDCEGSVKFGGEELLGHKTYAIAHKGLGYVPENRDIFPTLTVRQNLVLGEKRAQTPPRWRAEDMYEMFPRLKERADTLAGVLSGGEQQMLTLCRTLMGDPALVMIDEPTEGLAPKIVEQVANLFQEIRRRGVSILLVEQKLAIALDISERLYVMGHGRIVFEGAPRDVRGNAAMRKEWLEV 231          
BLAST of mRNA_P-wetherbeei_contig9558.2.1 vs. uniprot
Match: A0A0S8DGM1_9PROT (Mannosyltransferase n=1 Tax=Betaproteobacteria bacterium SG8_40 TaxID=1703389 RepID=A0A0S8DGM1_9PROT)

HSP 1 Score: 360 bits (925), Expect = 8.980e-121
Identity = 178/231 (77.06%), Postives = 197/231 (85.28%), Query Frame = 2
Query:  677 MLEVRDLHAYYGKSHILHGVHLKVGTGEIVSLLGRNGVGRSTTIKAIMGMVDCSGSVTFRGEEMVGLKAYQVAHKGLGYVPENRDIFPSLTVRQNLQLGQKGKLESERWGLEDMFQIFPRLKERADTEAGVLSGGEQQMLTLCRTLMGDPSLVMIDEPTEGLAPKIVEQVARLFEEIRKRGVSILLVEQKLAIALDISERLYVMGHGHIVFEGRPRDVRENAAMRKEWLEV 1369
            MLEV++LHAYYGKSHILHGVHL V  GEIVSLLGRNGVGRSTTIKA+MG V+ +G+V F GE + GL  Y++A KGLGYVPENRDIFP+LT RQNL LG KG  +S RW  EDMF +FPRL+ERA   AGVLSGGEQQMLTLCRTLMGDP LVMIDEPTEGLAPKIVEQ+A LFEEIR RGVSILLVEQKL IAL IS+R+YVMGHG IVFEG P D+R N ++RKEWLEV
Sbjct:    1 MLEVKNLHAYYGKSHILHGVHLNVSKGEIVSLLGRNGVGRSTTIKAVMGQVEHTGAVEFNGENLSGLPTYRIARKGLGYVPENRDIFPALTTRQNLLLGMKGTRQSGRWSEEDMFNLFPRLRERAAAPAGVLSGGEQQMLTLCRTLMGDPDLVMIDEPTEGLAPKIVEQMAHLFEEIRNRGVSILLVEQKLTIALRISQRVYVMGHGRIVFEGSPEDLRANESVRKEWLEV 231          
BLAST of mRNA_P-wetherbeei_contig9558.2.1 vs. uniprot
Match: A0A317H6R6_9PROT (ABC transporter ATP-binding protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A317H6R6_9PROT)

HSP 1 Score: 356 bits (914), Expect = 4.160e-119
Identity = 174/231 (75.32%), Postives = 196/231 (84.85%), Query Frame = 2
Query:  677 MLEVRDLHAYYGKSHILHGVHLKVGTGEIVSLLGRNGVGRSTTIKAIMGMVDCSGSVTFRGEEMVGLKAYQVAHKGLGYVPENRDIFPSLTVRQNLQLGQKGKLESERWGLEDMFQIFPRLKERADTEAGVLSGGEQQMLTLCRTLMGDPSLVMIDEPTEGLAPKIVEQVARLFEEIRKRGVSILLVEQKLAIALDISERLYVMGHGHIVFEGRPRDVRENAAMRKEWLEV 1369
            MLEV DLHAYYGKSHILHGVH+ V  GEI SLLGRNG GRSTTIKAIMG V+ +GSV FRG  + GLK + +A +GLGYVPENRDIFP+LTVRQNL LG KG+ +  RW ++DMF +FP L+ERA   AGV+SGGEQQMLTLCRTLMGDP L+MIDEPTEGLAPKIVEQVARLFEEI+ RGVSILLVEQKL IAL IS+RLYVMGHG IVFEG P ++R N ++RKEWLEV
Sbjct:    1 MLEVNDLHAYYGKSHILHGVHMHVRPGEIASLLGRNGAGRSTTIKAIMGQVEMTGSVVFRGASLAGLKTFAIARRGLGYVPENRDIFPTLTVRQNLLLGMKGRQQKGRWTIDDMFGLFPVLRERAGAPAGVMSGGEQQMLTLCRTLMGDPELIMIDEPTEGLAPKIVEQVARLFEEIKNRGVSILLVEQKLTIALKISQRLYVMGHGRIVFEGTPDELRANESVRKEWLEV 231          
BLAST of mRNA_P-wetherbeei_contig9558.2.1 vs. uniprot
Match: A0A6M4A157_9BURK (ABC transporter ATP-binding protein n=1 Tax=Undibacterium piscinae TaxID=2495591 RepID=A0A6M4A157_9BURK)

HSP 1 Score: 356 bits (914), Expect = 5.140e-119
Identity = 172/234 (73.50%), Postives = 202/234 (86.32%), Query Frame = 2
Query:  677 MLEVRDLHAYYGKSHILHGVHLKVGTGEIVSLLGRNGVGRSTTIKAIMGMVDCSGSVTFRGEEMVGLKAYQVAHKGLGYVPENRDIFPSLTVRQNLQLGQKGKL---ESERWGLEDMFQIFPRLKERADTEAGVLSGGEQQMLTLCRTLMGDPSLVMIDEPTEGLAPKIVEQVARLFEEIRKRGVSILLVEQKLAIALDISERLYVMGHGHIVFEGRPRDVRENAAMRKEWLEV 1369
            +LE+ +LHAYYGKSH+LHGV L V  GEIVSLLGRNGVGRSTT+KA MG VD  GS+ F+GE+++GLKAYQ+AHKGLGYVPENRDIFPSLTV QNL+LGQK      +++RW LEDM+Q+FPRL+ER  T AGVLSGGEQQMLTLCRTLMGDP L+MIDEPTEGLAPKIV+ VA    E+R RG+S+LLVEQKLAIALDIS+R+YVMGHG IVFEG P ++R+N A+R+EWLEV
Sbjct:    4 LLEISNLHAYYGKSHVLHGVDLVVHQGEIVSLLGRNGVGRSTTVKAAMGQVDAKGSILFKGEQLLGLKAYQIAHKGLGYVPENRDIFPSLTVEQNLRLGQKSTRVSNQAQRWSLEDMYQMFPRLRERQHTAAGVLSGGEQQMLTLCRTLMGDPDLIMIDEPTEGLAPKIVDLVAAYLTELRNRGISVLLVEQKLAIALDISQRVYVMGHGSIVFEGSPEELRKNHAIRREWLEV 237          
BLAST of mRNA_P-wetherbeei_contig9558.2.1 vs. uniprot
Match: A0A1F4CAI5_9PROT (ABC transporter ATP-binding protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_64_23 TaxID=1797499 RepID=A0A1F4CAI5_9PROT)

HSP 1 Score: 355 bits (910), Expect = 1.800e-118
Identity = 175/233 (75.11%), Postives = 201/233 (86.27%), Query Frame = 2
Query:  677 MLEVRDLHAYYGKSHILHGVHLKVGTGEIVSLLGRNGVGRSTTIKAIMGMVDCSGSVTFRGEEMVGLKAYQVAHKGLGYVPENRDIFPSLTVRQNLQLGQKGKL--ESERWGLEDMFQIFPRLKERADTEAGVLSGGEQQMLTLCRTLMGDPSLVMIDEPTEGLAPKIVEQVARLFEEIRKRGVSILLVEQKLAIALDISERLYVMGHGHIVFEGRPRDVRENAAMRKEWLEV 1369
            MLEV++LHAYYGKSHILHGVH++VG GEIVSLLGRNGVGRSTTIKAIMG V+  GSV F+  +M+G KAYQ+A  GLGYVPENRDIFP+LTV QNL LG K     +S RW L DM+++FP L+ERA  EAG++SGGEQQMLTLCRTLMGDP L+MIDEPTEGLAPKIVE VA LF EI+ RGVSILLVEQKLAIAL+IS+RLYVMGHG IVFEG P+++REN+ +RKEWLEV
Sbjct:    1 MLEVQNLHAYYGKSHILHGVHMQVGAGEIVSLLGRNGVGRSTTIKAIMGQVEAGGSVRFKNAQMLGKKAYQIARHGLGYVPENRDIFPTLTVEQNLLLGMKSSKPDKSARWNLADMYRLFPLLQERARVEAGMISGGEQQMLTLCRTLMGDPDLIMIDEPTEGLAPKIVELVAELFNEIKNRGVSILLVEQKLAIALNISQRLYVMGHGRIVFEGTPQELRENSTIRKEWLEV 233          
BLAST of mRNA_P-wetherbeei_contig9558.2.1 vs. uniprot
Match: A0A1F4JE22_9BURK (ABC transporter ATP-binding protein n=1 Tax=Burkholderiales bacterium RIFCSPLOWO2_02_FULL_57_36 TaxID=1797562 RepID=A0A1F4JE22_9BURK)

HSP 1 Score: 354 bits (909), Expect = 2.300e-118
Identity = 170/231 (73.59%), Postives = 202/231 (87.45%), Query Frame = 2
Query:  677 MLEVRDLHAYYGKSHILHGVHLKVGTGEIVSLLGRNGVGRSTTIKAIMGMVDCSGSVTFRGEEMVGLKAYQVAHKGLGYVPENRDIFPSLTVRQNLQLGQKGKLESERWGLEDMFQIFPRLKERADTEAGVLSGGEQQMLTLCRTLMGDPSLVMIDEPTEGLAPKIVEQVARLFEEIRKRGVSILLVEQKLAIALDISERLYVMGHGHIVFEGRPRDVRENAAMRKEWLEV 1369
            MLE+ DLH +YGKSHILHGV++KV  GEIVSLLGRNGVGRSTT+KA+MG VD +GSV F+GEE+ G KA+++AHKGLGYVPENRDIFP+LTV QNL LG+K K +  RW L+DM+++FPRLKER  T+AGVLSGGEQQMLTLCRTLMGDP L+MIDEPTEGLAPKIV+QVA    E++ RG+S+LLVEQKLAIAL+IS+R+YVMGHG IVFEG P D++ NA +RKEWLEV
Sbjct:    1 MLEINDLHGFYGKSHILHGVNMKVKEGEIVSLLGRNGVGRSTTVKAVMGQVDATGSVRFKGEEIRGKKAFEIAHKGLGYVPENRDIFPTLTVEQNLLLGEK-KGKQSRWHLDDMYELFPRLKERQHTQAGVLSGGEQQMLTLCRTLMGDPDLIMIDEPTEGLAPKIVDQVADYLNELKTRGISVLLVEQKLAIALEISQRVYVMGHGSIVFEGTPADLKSNAGIRKEWLEV 230          
BLAST of mRNA_P-wetherbeei_contig9558.2.1 vs. uniprot
Match: UPI001884088D (ABC transporter ATP-binding protein n=1 Tax=Lacisediminimonas profundi TaxID=2603856 RepID=UPI001884088D)

HSP 1 Score: 354 bits (909), Expect = 2.550e-118
Identity = 169/231 (73.16%), Postives = 204/231 (88.31%), Query Frame = 2
Query:  677 MLEVRDLHAYYGKSHILHGVHLKVGTGEIVSLLGRNGVGRSTTIKAIMGMVDCSGSVTFRGEEMVGLKAYQVAHKGLGYVPENRDIFPSLTVRQNLQLGQKGKLESERWGLEDMFQIFPRLKERADTEAGVLSGGEQQMLTLCRTLMGDPSLVMIDEPTEGLAPKIVEQVARLFEEIRKRGVSILLVEQKLAIALDISERLYVMGHGHIVFEGRPRDVRENAAMRKEWLEV 1369
            MLE+++LHAYYGKSH+LHGV LKVG GEIVSLLGRNGVGRSTT+KA MGMV+ +GS+ F+G E++GLKA+Q+AHKGLGYVPENRDIFP+LTV QNL LG+K  ++S RW L+DM+ +FPRLKER  T+AGVLSGGEQQMLTLCRTLMGDP L+MIDEPTEGLAPKIV+ VA+    ++ RG+S+LLVEQKLAIAL+IS+R+YVMGHG IVFEG P D++ NA +R+EWLEV
Sbjct:    4 MLEIKNLHAYYGKSHVLHGVDLKVGEGEIVSLLGRNGVGRSTTVKAAMGMVNATGSILFKGSELIGLKAFQIAHKGLGYVPENRDIFPTLTVEQNLLLGEKKSVKS-RWSLDDMYGMFPRLKERQHTQAGVLSGGEQQMLTLCRTLMGDPDLIMIDEPTEGLAPKIVDLVAQYLLALKNRGISVLLVEQKLAIALEISQRVYVMGHGAIVFEGTPADLKANAGIRREWLEV 233          
BLAST of mRNA_P-wetherbeei_contig9558.2.1 vs. uniprot
Match: A0A418X6C1_9BURK (ABC transporter ATP-binding protein n=1 Tax=Noviherbaspirillum cavernae TaxID=2320862 RepID=A0A418X6C1_9BURK)

HSP 1 Score: 353 bits (906), Expect = 6.530e-118
Identity = 169/231 (73.16%), Postives = 202/231 (87.45%), Query Frame = 2
Query:  677 MLEVRDLHAYYGKSHILHGVHLKVGTGEIVSLLGRNGVGRSTTIKAIMGMVDCSGSVTFRGEEMVGLKAYQVAHKGLGYVPENRDIFPSLTVRQNLQLGQKGKLESERWGLEDMFQIFPRLKERADTEAGVLSGGEQQMLTLCRTLMGDPSLVMIDEPTEGLAPKIVEQVARLFEEIRKRGVSILLVEQKLAIALDISERLYVMGHGHIVFEGRPRDVRENAAMRKEWLEV 1369
            MLE++DLHA+YGKSH+LHGV + V  GEIVSLLGRNGVGRSTT+KA MG V  +GS+ F+GEE+VGLKA++VAHKGLGYVPENRDIFP+LTV QNL LG+K K +  RW + DM+++FPRLKER  T+AGVLSGGEQQMLTLCRTLMGDP L+MIDEPTEGLAPKIV+ VA   +E++ RG+S+LLVEQKLAIAL+IS+R+YVMGHG IVFEG P+D+R N A+RKEWLEV
Sbjct:    1 MLEIKDLHAFYGKSHVLHGVDMNVREGEIVSLLGRNGVGRSTTVKATMGQVSVTGSIRFKGEELVGLKAFEVAHKGLGYVPENRDIFPALTVEQNLILGEK-KGKKSRWSINDMYKMFPRLKERQHTQAGVLSGGEQQMLTLCRTLMGDPDLIMIDEPTEGLAPKIVDLVAEYLKELKNRGISVLLVEQKLAIALEISQRVYVMGHGSIVFEGTPQDLRTNTAIRKEWLEV 230          
BLAST of mRNA_P-wetherbeei_contig9558.2.1 vs. uniprot
Match: UPI0019B3EE79 (ABC transporter ATP-binding protein n=2 Tax=Bacteria TaxID=2 RepID=UPI0019B3EE79)

HSP 1 Score: 353 bits (906), Expect = 7.260e-118
Identity = 169/231 (73.16%), Postives = 203/231 (87.88%), Query Frame = 2
Query:  677 MLEVRDLHAYYGKSHILHGVHLKVGTGEIVSLLGRNGVGRSTTIKAIMGMVDCSGSVTFRGEEMVGLKAYQVAHKGLGYVPENRDIFPSLTVRQNLQLGQKGKLESERWGLEDMFQIFPRLKERADTEAGVLSGGEQQMLTLCRTLMGDPSLVMIDEPTEGLAPKIVEQVARLFEEIRKRGVSILLVEQKLAIALDISERLYVMGHGHIVFEGRPRDVRENAAMRKEWLEV 1369
            +LE++DL+A+YGKSH+LHGV++ V  GEIVSLLGRNGVGRSTTIKA MG VD +GS+ F+GEE++G+KA+Q+AHKGLGYVPENRDIFPSLTV QNL LG+K   +S RW L+DM+Q+FPRLKER +T AGVLSGGEQQMLTLCRTLMGDP L+MIDEPTEGLAPKIV+ VA   +E++ RG+S+LLVEQKLAIAL+IS+R+YVMGHG IVFEG P D+R N  +RKEWLEV
Sbjct:    4 LLEIKDLNAFYGKSHVLHGVNMVVNQGEIVSLLGRNGVGRSTTIKAAMGQVDANGSILFKGEEIIGMKAFQIAHKGLGYVPENRDIFPSLTVEQNLILGEKSNKKS-RWVLDDMYQMFPRLKERQNTSAGVLSGGEQQMLTLCRTLMGDPDLIMIDEPTEGLAPKIVDLVAEYLKELKNRGISVLLVEQKLAIALEISQRVYVMGHGSIVFEGTPADLRANETIRKEWLEV 233          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9558.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A521VHG2_9PROT5.760e-13987.88ABC transporter ATP-binding protein n=3 Tax=unclas... [more]
A0A1F3YBG5_9PROT1.170e-13385.28ABC transporter ATP-binding protein n=1 Tax=Betapr... [more]
A0A0S8DGM1_9PROT8.980e-12177.06Mannosyltransferase n=1 Tax=Betaproteobacteria bac... [more]
A0A317H6R6_9PROT4.160e-11975.32ABC transporter ATP-binding protein n=1 Tax=Proteo... [more]
A0A6M4A157_9BURK5.140e-11973.50ABC transporter ATP-binding protein n=1 Tax=Undiba... [more]
A0A1F4CAI5_9PROT1.800e-11875.11ABC transporter ATP-binding protein n=1 Tax=Betapr... [more]
A0A1F4JE22_9BURK2.300e-11873.59ABC transporter ATP-binding protein n=1 Tax=Burkho... [more]
UPI001884088D2.550e-11873.16ABC transporter ATP-binding protein n=1 Tax=Lacise... [more]
A0A418X6C1_9BURK6.530e-11873.16ABC transporter ATP-binding protein n=1 Tax=Novihe... [more]
UPI0019B3EE797.260e-11873.16ABC transporter ATP-binding protein n=2 Tax=Bacter... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9558contigP-wetherbeei_contig9558:1150..2521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1265502.KB905940_gene3000
PFAMsABC_tran
Model size1372
Max annot lvl28216|Betaproteobacteria
KEGG koko:K01996
KEGG TC3.A.1.4
KEGG Pathwayko02010,ko02024,map02010,map02024
KEGG ModuleM00237
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.72e-121
EggNOG OGsCOG0410@1|root,COG0410@2|Bacteria,1MUR3@1224|Proteobacteria,2VINK@28216|Betaproteobacteria,4A9WA@80864|Comamonadaceae
DescriptionPFAM ABC transporter related
Cds size696
COG categoryE
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187098.6493292-CDS-P-wetherbeei_contig9558:1149..18451683187098.6493292-CDS-P-wetherbeei_contig9558:1149..1845Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9558 1150..1845 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187098.6616917-UTR-P-wetherbeei_contig9558:1845..25211683187098.6616917-UTR-P-wetherbeei_contig9558:1845..2521Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9558 1846..2521 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9558.2.1prot_P-wetherbeei_contig9558.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9558 1150..1845 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9558.2.1

>prot_P-wetherbeei_contig9558.2.1 ID=prot_P-wetherbeei_contig9558.2.1|Name=mRNA_P-wetherbeei_contig9558.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=232bp
MLEVRDLHAYYGKSHILHGVHLKVGTGEIVSLLGRNGVGRSTTIKAIMGM
VDCSGSVTFRGEEMVGLKAYQVAHKGLGYVPENRDIFPSLTVRQNLQLGQ
KGKLESERWGLEDMFQIFPRLKERADTEAGVLSGGEQQMLTLCRTLMGDP
SLVMIDEPTEGLAPKIVEQVARLFEEIRKRGVSILLVEQKLAIALDISER
LYVMGHGHIVFEGRPRDVRENAAMRKEWLEV*
back to top

mRNA from alignment at P-wetherbeei_contig9558:1150..2521-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9558.2.1 ID=mRNA_P-wetherbeei_contig9558.2.1|Name=mRNA_P-wetherbeei_contig9558.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1372bp|location=Sequence derived from alignment at P-wetherbeei_contig9558:1150..2521- (Phaeothamnion wetherbeei SAG_119_79)
ATCATCGGCCCGAACGGCGCGGGCAAGTCCACGCTCTTCAACCTGGTCAG CGGACGCTTCCCGATGACCGCGGGCTCGATCCGCCTGAACGGCGAGGAGA CCGGTGGCCTGAAGCCTTTCCAGATCAACCGCAAGGGGCTGTCGCGGTCC TTCCAGATCACCAACATCTTCCACAACCTGTCGGTGTTCGAGAACGTGCG CTGCGCGGTGCTGTGGTCGCTCGGCTACAGGTACTCGTTCTGGCACCGGC TCAACGGCCTCAAGGACGCGCAACTGCGCGCCGAGGAAGTCATCGAGTCG ATCGGCCTCACGCGCCACAAGGCGCGCCCGGCGGGCCTCCTCACCTACGC GGAGCAGAGGGCGCTCGAGATCGGCATCACCATCGCGGGCGGCGCGGAGG TGATCCTGCTCGACGAGCCCACCGCCGGCATGAGCCGCTCGGAGACCTCG GCCGTGGTCGAACTGATCCGCCGCGTGACCGCCGGCAAGACCCTCGTCAT GGTCGAGCACGATATGGGCGTGGTGTTTGGCCTCGCCGACCGGATCTCGG TGCTGGTGTACGGCGAGGTGATCGCCACCGGTGCGCCGGAGGAAATCCGC GCCAACCCGGCGGTGCAGGAAGCCTACCTCGGCGGGCTGCACAAGGACGG GGCCGGGGACACTGCGGGGAACGCCCATGCTTGAGGTGCGCGACCTCCAC GCCTACTACGGCAAGAGCCACATCCTGCACGGCGTCCACCTGAAGGTGGG CACGGGCGAGATCGTCAGCCTGCTCGGCCGCAACGGCGTCGGCCGCTCGA CCACCATCAAGGCCATCATGGGCATGGTGGACTGCAGCGGTTCGGTGACG TTCCGCGGCGAGGAGATGGTCGGCCTCAAGGCCTACCAGGTGGCCCACAA GGGCCTCGGCTACGTGCCCGAGAACCGCGACATCTTCCCCTCGCTCACCG TGCGCCAGAACCTGCAGCTCGGCCAGAAAGGCAAGCTCGAATCGGAGCGC TGGGGCCTGGAGGACATGTTCCAGATCTTCCCGCGACTCAAGGAACGCGC CGACACCGAGGCCGGCGTGCTCTCGGGCGGTGAGCAGCAGATGCTGACGC TGTGCCGCACGCTGATGGGCGACCCGTCGCTCGTGATGATCGACGAGCCC ACCGAGGGCCTCGCGCCCAAGATCGTCGAGCAGGTGGCGCGCCTGTTCGA GGAGATCCGCAAGCGCGGCGTGTCGATCCTGCTGGTCGAGCAGAAGCTCG CCATCGCGCTCGACATCTCCGAGCGGCTGTACGTGATGGGCCACGGCCAC ATCGTCTTCGAAGGCCGGCCGCGCGACGTGCGCGAGAACGCGGCCATGCG CAAGGAGTGGCTGGAGGTCTAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig9558:1150..2521-

>mRNA_P-wetherbeei_contig9558.2.1 ID=mRNA_P-wetherbeei_contig9558.2.1|Name=mRNA_P-wetherbeei_contig9558.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=696bp|location=Sequence derived from alignment at P-wetherbeei_contig9558:1150..2521- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTGAGGTGCGCGACCTCCACGCCTACTACGGCAAGAGCCACATCCT
GCACGGCGTCCACCTGAAGGTGGGCACGGGCGAGATCGTCAGCCTGCTCG
GCCGCAACGGCGTCGGCCGCTCGACCACCATCAAGGCCATCATGGGCATG
GTGGACTGCAGCGGTTCGGTGACGTTCCGCGGCGAGGAGATGGTCGGCCT
CAAGGCCTACCAGGTGGCCCACAAGGGCCTCGGCTACGTGCCCGAGAACC
GCGACATCTTCCCCTCGCTCACCGTGCGCCAGAACCTGCAGCTCGGCCAG
AAAGGCAAGCTCGAATCGGAGCGCTGGGGCCTGGAGGACATGTTCCAGAT
CTTCCCGCGACTCAAGGAACGCGCCGACACCGAGGCCGGCGTGCTCTCGG
GCGGTGAGCAGCAGATGCTGACGCTGTGCCGCACGCTGATGGGCGACCCG
TCGCTCGTGATGATCGACGAGCCCACCGAGGGCCTCGCGCCCAAGATCGT
CGAGCAGGTGGCGCGCCTGTTCGAGGAGATCCGCAAGCGCGGCGTGTCGA
TCCTGCTGGTCGAGCAGAAGCTCGCCATCGCGCTCGACATCTCCGAGCGG
CTGTACGTGATGGGCCACGGCCACATCGTCTTCGAAGGCCGGCCGCGCGA
CGTGCGCGAGAACGCGGCCATGCGCAAGGAGTGGCTGGAGGTCTAG
back to top