mRNA_P-wetherbeei_contig9553.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9553.1.1
Unique NamemRNA_P-wetherbeei_contig9553.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9553.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9553contigP-wetherbeei_contig9553:1611..2389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size780
Hectar predicted targeting categorymitochondrion
Exons1
Cds size699
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187098.4404197-UTR-P-wetherbeei_contig9553:1610..16901683187098.4404197-UTR-P-wetherbeei_contig9553:1610..1690Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9553 1611..1690 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187098.4520833-CDS-P-wetherbeei_contig9553:1690..23891683187098.4520833-CDS-P-wetherbeei_contig9553:1690..2389Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9553 1691..2389 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9553.1.1prot_P-wetherbeei_contig9553.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9553 1691..2389 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9553.1.1

>prot_P-wetherbeei_contig9553.1.1 ID=prot_P-wetherbeei_contig9553.1.1|Name=mRNA_P-wetherbeei_contig9553.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=233bp
MKIVVIFRISLPKCSCCPRRISTNVLLRKCSRAGACCVIKAFFRNAIILS
IYEICLTLPPLFPSPISLTLRVLSPLSDRWKPRHPRRRPGRHRRYREALR
QSRCRRHRLYQECRCRRRRRRRLSRRRSRLRGHCPLAHRRRHRRRCRRGW
RLRRFRSRCRRPRERCRPQFRSRLMLRRSPPPSSRHLLCPPSRCSRRRCL
PPQQLSRRQCLPPRQLSCHRCLPPQHLSRRRCR
back to top

mRNA from alignment at P-wetherbeei_contig9553:1611..2389+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9553.1.1 ID=mRNA_P-wetherbeei_contig9553.1.1|Name=mRNA_P-wetherbeei_contig9553.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=779bp|location=Sequence derived from alignment at P-wetherbeei_contig9553:1611..2389+ (Phaeothamnion wetherbeei SAG_119_79)
TATTCAGTTAAAAGGTGCGTGGTTTCTCATTGCCGGTGTCATTGCATCGC
CGAATCCCTCCCTCATCACTGGCGGGAGCGATGAAAATCGTTGTGATTTT
CAGAATATCTTTGCCGAAGTGTTCGTGTTGCCCCCGTCGTATTTCAACAA
ACGTACTCCTCCGCAAATGCTCACGAGCTGGAGCCTGTTGCGTCATCAAA
GCCTTTTTTCGCAATGCCATTATCTTGAGCATTTATGAAATTTGTCTAAC
GCTCCCTCCACTATTTCCTTCTCCAATTTCGTTAACCCTGCGAGTCCTCT
CTCCTCTTTCGGATAGATGGAAACCGAGGCATCCCCGACGCCGACCCGGC
CGCCACCGCCGGTACCGGGAGGCCCTCCGCCAATCCCGCTGTCGCCGCCA
CCGGCTCTACCAGGAATGCCGCTGTCGCCGGAGGCGCCGCCGCCGCCTGT
CCCGCCGCCGGTCCCGGCTGCGCGGCCACTGTCCATTGGCTCACCGTCGG
CGCCACCGCCGCCGGTGCCGTCGCGGGTGGCGCCTCCGCCGATTCCGCTC
CCGATGTCGCCGCCCCCGGGAACGATGCCGCCCCCAATTCCGTTCAAGGC
TGATGCTGCGGAGGAGCCCACCGCCATCGTCTCGCCACCTCCTGTGCCCG
CCGTCAAGGTGCAGCCGCCGCCGGTGCCTGCCGCCGCAGCAACTCAGCCG
CCGCCAGTGCTTGCCGCCGCGGCAGCTCAGCTGCCACCGGTGCCTGCCGC
CGCAGCACCTCAGCCGCCGCCGGTGCCGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig9553:1611..2389+

>mRNA_P-wetherbeei_contig9553.1.1 ID=mRNA_P-wetherbeei_contig9553.1.1|Name=mRNA_P-wetherbeei_contig9553.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=699bp|location=Sequence derived from alignment at P-wetherbeei_contig9553:1611..2389+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAATCGTTGTGATTTTCAGAATATCTTTGCCGAAGTGTTCGTGTTG
CCCCCGTCGTATTTCAACAAACGTACTCCTCCGCAAATGCTCACGAGCTG
GAGCCTGTTGCGTCATCAAAGCCTTTTTTCGCAATGCCATTATCTTGAGC
ATTTATGAAATTTGTCTAACGCTCCCTCCACTATTTCCTTCTCCAATTTC
GTTAACCCTGCGAGTCCTCTCTCCTCTTTCGGATAGATGGAAACCGAGGC
ATCCCCGACGCCGACCCGGCCGCCACCGCCGGTACCGGGAGGCCCTCCGC
CAATCCCGCTGTCGCCGCCACCGGCTCTACCAGGAATGCCGCTGTCGCCG
GAGGCGCCGCCGCCGCCTGTCCCGCCGCCGGTCCCGGCTGCGCGGCCACT
GTCCATTGGCTCACCGTCGGCGCCACCGCCGCCGGTGCCGTCGCGGGTGG
CGCCTCCGCCGATTCCGCTCCCGATGTCGCCGCCCCCGGGAACGATGCCG
CCCCCAATTCCGTTCAAGGCTGATGCTGCGGAGGAGCCCACCGCCATCGT
CTCGCCACCTCCTGTGCCCGCCGTCAAGGTGCAGCCGCCGCCGGTGCCTG
CCGCCGCAGCAACTCAGCCGCCGCCAGTGCTTGCCGCCGCGGCAGCTCAG
CTGCCACCGGTGCCTGCCGCCGCAGCACCTCAGCCGCCGCCGGTGCCGA
back to top