mRNA_P-wetherbeei_contig9552.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9552.1.1
Unique NamemRNA_P-wetherbeei_contig9552.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9552.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9552contigP-wetherbeei_contig9552:837..1544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size710
Hectar predicted targeting categorysignal peptide
Exons1
Cds size642
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187098.3951085-CDS-P-wetherbeei_contig9552:836..14781683187098.3951085-CDS-P-wetherbeei_contig9552:836..1478Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9552 837..1478 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187098.407198-UTR-P-wetherbeei_contig9552:1478..15441683187098.407198-UTR-P-wetherbeei_contig9552:1478..1544Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9552 1479..1544 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9552.1.1prot_P-wetherbeei_contig9552.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9552 837..1478 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9552.1.1

>prot_P-wetherbeei_contig9552.1.1 ID=prot_P-wetherbeei_contig9552.1.1|Name=mRNA_P-wetherbeei_contig9552.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=214bp
AAAGAAAAAAGAAAAAAAPSSKVSAGGRRAYRCGTSGTDSGCSTRGRICS
TREDRQGSRCPAETLRGAHHRGRRWQHCGAAGVGFAAGELAPLPPAVRDA
FRTFARLTVLADVTAAVRPRDCAFLHVSHAQALQKLARLGDGGSDGGAGR
QHDAGGRGGVHRVAGAPQVWRATRKRVPAVRGGTVVVVIVTGRGGLRSTF
DRWRVGRCVSEQP*
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mRNA from alignment at P-wetherbeei_contig9552:837..1544+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9552.1.1 ID=mRNA_P-wetherbeei_contig9552.1.1|Name=mRNA_P-wetherbeei_contig9552.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=708bp|location=Sequence derived from alignment at P-wetherbeei_contig9552:837..1544+ (Phaeothamnion wetherbeei SAG_119_79)
GCAGCTGCAGGGGCAGCTGCGGCGGCGGCAGGGGCGGCGGCGGCGGCGGC
CGCGCCGTCGTCGAAAGTGTCGGCGGGTGGCCGCCGGGCGTATCGCTGTG
GGACCTCCGGGACTGACTCTGGATGCTCCACGAGAGGGCGCATATGCTCC
ACGAGAGAAGACAGACAAGGAAGTCGATGCCCGGCTGAAACGCTACGCGG
CGCTCATCACCGCGGGCGTCGGTGGCAGCACTGCGGTGCTGCTGGAGTCG
GTTTCGCGGCTGGCGAACTGGCACCTCTGCCGCCGGCGGTACGGGACGCC
TTTCGGACCTTCGCGCGGCTCACCGTGCTGGCGGACGTTACGGCAGCGGT
GCGGCCGCGGGATTGCGCGTTCCTGCACGTGAGCCATGCCCAGGCCCTCC
AGAAGCTCGCAAGGCTCGGCGACGGCGGGTCAGACGGCGGCGCCGGCCGG
CAGCATGACGCGGGCGGCCGCGGTGGCGTGCACCGTGTTGCCGGTGCTCC
TCAAGTGTGGCGTGCCACCCGAAAGCGAGTACCTGCAGTTCGCGGAGGTA
CTGTCGTCGTGGTCATCGTGACAGGAAGAGGAGGACTCAGGAGCACATTT
GATCGTTGGCGAGTCGGGCGATGCGTGTCGGAACAGCCATGAGCGAGCCG
ATAGAAGTCACAGCGGTATTTAAATTCACAAGGGTGATGGCGTCGGCGTC
GCCGCTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9552:837..1544+

>mRNA_P-wetherbeei_contig9552.1.1 ID=mRNA_P-wetherbeei_contig9552.1.1|Name=mRNA_P-wetherbeei_contig9552.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=642bp|location=Sequence derived from alignment at P-wetherbeei_contig9552:837..1544+ (Phaeothamnion wetherbeei SAG_119_79)
GCAGCTGCAGGGGCAGCTGCGGCGGCGGCAGGGGCGGCGGCGGCGGCGGC
CGCGCCGTCGTCGAAAGTGTCGGCGGGTGGCCGCCGGGCGTATCGCTGTG
GGACCTCCGGGACTGACTCTGGATGCTCCACGAGAGGGCGCATATGCTCC
ACGAGAGAAGACAGACAAGGAAGTCGATGCCCGGCTGAAACGCTACGCGG
CGCTCATCACCGCGGGCGTCGGTGGCAGCACTGCGGTGCTGCTGGAGTCG
GTTTCGCGGCTGGCGAACTGGCACCTCTGCCGCCGGCGGTACGGGACGCC
TTTCGGACCTTCGCGCGGCTCACCGTGCTGGCGGACGTTACGGCAGCGGT
GCGGCCGCGGGATTGCGCGTTCCTGCACGTGAGCCATGCCCAGGCCCTCC
AGAAGCTCGCAAGGCTCGGCGACGGCGGGTCAGACGGCGGCGCCGGCCGG
CAGCATGACGCGGGCGGCCGCGGTGGCGTGCACCGTGTTGCCGGTGCTCC
TCAAGTGTGGCGTGCCACCCGAAAGCGAGTACCTGCAGTTCGCGGAGGTA
CTGTCGTCGTGGTCATCGTGACAGGAAGAGGAGGACTCAGGAGCACATTT
GATCGTTGGCGAGTCGGGCGATGCGTGTCGGAACAGCCATGA
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