mRNA_P-wetherbeei_contig9540.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9540.1.1
Unique NamemRNA_P-wetherbeei_contig9540.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig9540.1.1 vs. uniprot
Match: A0A1D2NN15_ORCCI (Cysteine-rich PDZ-binding protein n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2NN15_ORCCI)

HSP 1 Score: 60.8 bits (146), Expect = 3.350e-10
Identity = 35/88 (39.77%), Postives = 48/88 (54.55%), Query Frame = 1 
Query:    1 MVCERCEKKLGALIVPDTWKAGSKYGAGXXXXXXXXXXXXXXXXXAANRVVSLQILSFLPRNR---RCRICKKKV-QNQYHYCQACAY 252
            MVCE+CEKKLG +I PDTWK+G++                       N++++ +   F P  +   +CRICK+KV Q   HYCQ CAY
Sbjct:    1 MVCEKCEKKLGKVITPDTWKSGAR-----------NTTEGGGRKVGENKLLTAKKSRFNPYQKTFEQCRICKQKVHQVGSHYCQPCAY 77
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BLAST of mRNA_P-wetherbeei_contig9540.1.1 vs. uniprot
Match: UPI0006B1041D (cysteine-rich PDZ-binding protein-like isoform X4 n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B1041D)

HSP 1 Score: 60.1 bits (144), Expect = 4.680e-10
Identity = 34/88 (38.64%), Postives = 49/88 (55.68%), Query Frame = 1 
Query:    1 MVCERCEKKLGALIVPDTWKAGSKYGAGXXXXXXXXXXXXXXXXXAANRVVSLQILSFLPRNR--RCRICKKKV-QNQYHYCQACAYE 255
            MVCE+C+KKLG +I PDTWK G++                       N+ ++ +   F P ++  +CRIC++KV Q   HYCQACAY+
Sbjct:    1 MVCEKCQKKLGKVITPDTWKDGAR-----------NTTESGGRVVNENKALTSKKARFAPYSKFDQCRICRQKVHQVGSHYCQACAYK 77
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BLAST of mRNA_P-wetherbeei_contig9540.1.1 vs. uniprot
Match: A0A1B0GJ20_LUTLO (Cysteine-rich PDZ-binding protein n=4 Tax=Phlebotominae TaxID=7198 RepID=A0A1B0GJ20_LUTLO)

HSP 1 Score: 60.5 bits (145), Expect = 4.750e-10
Identity = 35/86 (40.70%), Postives = 45/86 (52.33%), Query Frame = 1 
Query:    1 MVCERCEKKLGALIVPDTWKAGSKYGAGXXXXXXXXXXXXXXXXXAANRVVSLQILSFLPRNRRCRICKKKV-QNQYHYCQACAYE 255
            MVCE+CEKKLG ++ PDTWK+G++                       N +      SF P    CRIC++KV Q   HYCQACAY+
Sbjct:    1 MVCEKCEKKLGRIVTPDTWKSGARNTVESGGRKINENKAITSARERFNPISK----SFPP----CRICRQKVHQAGSHYCQACAYK 78
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BLAST of mRNA_P-wetherbeei_contig9540.1.1 vs. uniprot
Match: A0A3Q2ZHK7_HIPCM (Cysteine-rich PDZ-binding protein n=3 Tax=Syngnathidae TaxID=72045 RepID=A0A3Q2ZHK7_HIPCM)

HSP 1 Score: 59.7 bits (143), Expect = 9.750e-10
Identity = 35/90 (38.89%), Postives = 47/90 (52.22%), Query Frame = 1 
Query:    1 MVCERCEKKLGALIVPDTWKAGSKYGAGXXXXXXXXXXXXXXXXXAANRVVSLQILSFLPRNRR----CRICKKKV-QNQYHYCQACAYE 255
            MVCE+CEKKLG +I PDTWK G++                       N++++ +   F P N+     CRICK  V Q+  HYCQ CAY+
Sbjct:    1 MVCEKCEKKLGRVITPDTWKDGAR-----------NTIESGGRKRNENKLLTSKKARFDPYNKTGFATCRICKSSVHQSGSHYCQGCAYK 79
[Close]
BLAST of mRNA_P-wetherbeei_contig9540.1.1 vs. uniprot
Match: UPI000BA7FBED (cysteine-rich PDZ-binding protein-like isoform X1 n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA7FBED)

HSP 1 Score: 60.1 bits (144), Expect = 1.210e-9
Identity = 34/88 (38.64%), Postives = 49/88 (55.68%), Query Frame = 1 
Query:    1 MVCERCEKKLGALIVPDTWKAGSKYGAGXXXXXXXXXXXXXXXXXAANRVVSLQILSFLPRNR--RCRICKKKV-QNQYHYCQACAYE 255
            MVCE+C+KKLG +I PDTWK G++                       N+ ++ +   F P ++  +CRIC++KV Q   HYCQACAY+
Sbjct:    1 MVCEKCQKKLGKVITPDTWKDGAR-----------NTTESGGRVVNENKALTSKKARFAPYSKFDQCRICRQKVHQVGSHYCQACAYK 77
[Close]
BLAST of mRNA_P-wetherbeei_contig9540.1.1 vs. uniprot
Match: UPI00189D5DB2 (cysteine-rich PDZ-binding protein-like n=1 Tax=Choloepus didactylus TaxID=27675 RepID=UPI00189D5DB2)

HSP 1 Score: 58.5 bits (140), Expect = 2.520e-9
Identity = 35/90 (38.89%), Postives = 46/90 (51.11%), Query Frame = 1 
Query:    1 MVCERCEKKLGALIVPDTWKAGSKYGAGXXXXXXXXXXXXXXXXXAANRVVSLQILSFLPRNRR----CRICKKKV-QNQYHYCQACAYE 255
            MVC++CEKKLGA+I PDTWK G++ G                     N+ ++ +   F P  +     CRICK  V Q   HYCQ CAY+
Sbjct:    1 MVCKKCEKKLGAVITPDTWKDGAESGG---------------RKLNENKALTSKKARFDPYGKNKFSTCRICKSSVHQPGSHYCQGCAYK 75
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BLAST of mRNA_P-wetherbeei_contig9540.1.1 vs. uniprot
Match: A0A3Q1H588_ANATE (Cysteine-rich PDZ-binding protein n=3 Tax=Anabantaria TaxID=1489892 RepID=A0A3Q1H588_ANATE)

HSP 1 Score: 58.2 bits (139), Expect = 3.910e-9
Identity = 34/90 (37.78%), Postives = 47/90 (52.22%), Query Frame = 1 
Query:    1 MVCERCEKKLGALIVPDTWKAGSKYGAGXXXXXXXXXXXXXXXXXAANRVVSLQILSFLPRNRR----CRICKKKV-QNQYHYCQACAYE 255
            MVCE+CEKKLG +I PDTWK G++                       N++++ +   F P ++     CRICK  V Q+  HYCQ CAY+
Sbjct:    1 MVCEKCEKKLGKVITPDTWKDGAR-----------NTTESGGRKLNENKMLTAKKARFDPYSKTGFAICRICKSSVHQSGSHYCQGCAYK 79
[Close]
BLAST of mRNA_P-wetherbeei_contig9540.1.1 vs. uniprot
Match: A0A2I0URY1_LIMLA (Cysteine-rich PDZ-binding protein n=1 Tax=Limosa lapponica baueri TaxID=1758121 RepID=A0A2I0URY1_LIMLA)

HSP 1 Score: 58.2 bits (139), Expect = 3.910e-9
Identity = 35/90 (38.89%), Postives = 42/90 (46.67%), Query Frame = 1 
Query:    1 MVCERCEKKLGALIVPDTWKAGSKYGAGXXXXXXXXXXXXXXXXXAANRVVSLQILSFLPRNRR----CRICKKKV-QNQYHYCQACAYE 255
            MVCE+CEKKLG +I PDTWK G++                       N  +    L F P  +     CRICK  V Q   HYCQ CAY+
Sbjct:    1 MVCEKCEKKLGTVITPDTWKDGAR-----------NTTAKEILYFKVNNKILFLFLRFDPYGKNKFAICRICKSSVHQPGSHYCQGCAYK 79
[Close]
BLAST of mRNA_P-wetherbeei_contig9540.1.1 vs. uniprot
Match: H3AP79_LATCH (Cysteine-rich PDZ-binding protein n=6 Tax=Sarcopterygii TaxID=8287 RepID=H3AP79_LATCH)

HSP 1 Score: 58.2 bits (139), Expect = 3.910e-9
Identity = 34/90 (37.78%), Postives = 45/90 (50.00%), Query Frame = 1 
Query:    1 MVCERCEKKLGALIVPDTWKAGSKYGAGXXXXXXXXXXXXXXXXXAANRVVSLQILSFLPRNRR----CRICKKKV-QNQYHYCQACAYE 255
            MVC++CEKKLG +I PDTWKAG++                       N+ ++ +   F P  +     CRICK  V Q   HYCQ CAY+
Sbjct:    1 MVCDKCEKKLGTVITPDTWKAGAR-----------NTTESGGRKLNENKALTAKKARFDPYGKNKFAICRICKSSVHQPGSHYCQGCAYK 79
[Close]
BLAST of mRNA_P-wetherbeei_contig9540.1.1 vs. uniprot
Match: A0A3P8VKW2_CYNSE (Cysteine-rich PDZ-binding protein n=1 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8VKW2_CYNSE)

HSP 1 Score: 57.8 bits (138), Expect = 5.040e-9
Identity = 34/90 (37.78%), Postives = 47/90 (52.22%), Query Frame = 1 
Query:    1 MVCERCEKKLGALIVPDTWKAGSKYGAGXXXXXXXXXXXXXXXXXAANRVVSLQILSFLPRNRR----CRICKKKV-QNQYHYCQACAYE 255
            MVCE+CEKKLG +I PDTWK G++                       N++++ +   F P ++     CRICK  V Q+  HYCQ CAY+
Sbjct:    1 MVCEKCEKKLGKVITPDTWKDGAR-----------NTTESGGRKLNENKLLTSKKARFDPYSKTGFAICRICKSSVHQSGSHYCQGCAYK 79
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9540.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1D2NN15_ORCCI3.350e-1039.77Cysteine-rich PDZ-binding protein n=1 Tax=Orchesel... [more]
UPI0006B1041D4.680e-1038.64cysteine-rich PDZ-binding protein-like isoform X4 ... [more]
A0A1B0GJ20_LUTLO4.750e-1040.70Cysteine-rich PDZ-binding protein n=4 Tax=Phleboto... [more]
A0A3Q2ZHK7_HIPCM9.750e-1038.89Cysteine-rich PDZ-binding protein n=3 Tax=Syngnath... [more]
UPI000BA7FBED1.210e-938.64cysteine-rich PDZ-binding protein-like isoform X1 ... [more]
UPI00189D5DB22.520e-938.89cysteine-rich PDZ-binding protein-like n=1 Tax=Cho... [more]
A0A3Q1H588_ANATE3.910e-937.78Cysteine-rich PDZ-binding protein n=3 Tax=Anabanta... [more]
A0A2I0URY1_LIMLA3.910e-938.89Cysteine-rich PDZ-binding protein n=1 Tax=Limosa l... [more]
H3AP79_LATCH3.910e-937.78Cysteine-rich PDZ-binding protein n=6 Tax=Sarcopte... [more]
A0A3P8VKW2_CYNSE5.040e-937.78Cysteine-rich PDZ-binding protein n=1 Tax=Cynoglos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9540contigP-wetherbeei_contig9540:2032..2513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog653948.CCA18627
Preferred nameCRIPT
PFAMsCript
Model size255
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001650,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006996,GO:0007010,GO:0007017,GO:0008017,GO:0008092,GO:0008104,GO:0008150,GO:0009987,GO:0014069,GO:0015631,GO:0016043,GO:0019904,GO:0030165,GO:0030425,GO:0031122,GO:0031974,GO:0031981,GO:0032279,GO:0032879,GO:0032880,GO:0033036,GO:0033043,GO:0033365,GO:0034613,GO:0035372,GO:0036477,GO:0042995,GO:0043005,GO:0043025,GO:0043197,GO:0043198,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044297,GO:0044309,GO:0044380,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044456,GO:0044463,GO:0044464,GO:0044877,GO:0045184,GO:0045202,GO:0050789,GO:0050794,GO:0050803,GO:0050807,GO:0051128,GO:0051179,GO:0051234,GO:0051641,GO:0060341,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071840,GO:0072698,GO:0097110,GO:0097435,GO:0097447,GO:0097458,GO:0098794,GO:0098984,GO:0099175,GO:0099572,GO:0120025,GO:0120038,GO:1901626,GO:1902897,GO:1903827,GO:1905475,GO:1905874
Exons2
Evalue2.63e-11
EggNOG OGsKOG3476@1|root,KOG3476@2759|Eukaryota
Descriptionregulation of postsynaptic density protein 95 clustering
Cds size255
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187098.1271434-CDS-P-wetherbeei_contig9540:2031..21711683187098.1271434-CDS-P-wetherbeei_contig9540:2031..2171Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9540 2032..2171 +
1683187098.1384616-CDS-P-wetherbeei_contig9540:2398..25131683187098.1384616-CDS-P-wetherbeei_contig9540:2398..2513Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9540 2399..2513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9540.1.1prot_P-wetherbeei_contig9540.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9540 2032..2513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9540.1.1

>prot_P-wetherbeei_contig9540.1.1 ID=prot_P-wetherbeei_contig9540.1.1|Name=mRNA_P-wetherbeei_contig9540.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=85bp
MVCERCEKKLGALIVPDTWKAGSKYGAGGGGGASSAGGKSEAGGGAANRV
VSLQILSFLPRNRRCRICKKKVQNQYHYCQACAYE
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mRNA from alignment at P-wetherbeei_contig9540:2032..2513+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9540.1.1 ID=mRNA_P-wetherbeei_contig9540.1.1|Name=mRNA_P-wetherbeei_contig9540.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=482bp|location=Sequence derived from alignment at P-wetherbeei_contig9540:2032..2513+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCTGCGAGAGATGCGAAAAGAAACTGGGAGCCCTGATCGTCCCCGA
TACATGGAAAGCAGGCTCAAAGTACGGAGCCGGCGGCGGCGGAGGTGCTT
CCTCAGCGGGAGGGAAAAGTGAAGCTGGAGGTGGGGCAGCGTCGGGAGGA
GGATCAGCAGCCGGAACTTCGAAAGCGCTGAAACCTGTCAACATGCTGTT
AAAACATGGTGCAGCGCAGCGATTGGCAAATCGATATAACCCAACGGCAA
TCGAGCGAGCGTAAGTCGAAAGAGAATGAAAGAGTTTGCAAGCGTGTCTC
CCATGATCAACGCCGAGGAAGAAAACCCAAACTCCCCCTCACCCTATCTA
TGCTTGAGTTATCGAAGCAATCGCGTCGTATCCCTCCAAATCCTTTCCTT
TCTTCCCCGAAATCGCAGGTGCAGAATATGTAAGAAGAAGGTGCAAAATC
AATACCACTACTGCCAGGCTTGCGCATATGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9540:2032..2513+

>mRNA_P-wetherbeei_contig9540.1.1 ID=mRNA_P-wetherbeei_contig9540.1.1|Name=mRNA_P-wetherbeei_contig9540.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=255bp|location=Sequence derived from alignment at P-wetherbeei_contig9540:2032..2513+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCTGCGAGAGATGCGAAAAGAAACTGGGAGCCCTGATCGTCCCCGA
TACATGGAAAGCAGGCTCAAAGTACGGAGCCGGCGGCGGCGGAGGTGCTT
CCTCAGCGGGAGGGAAAAGTGAAGCTGGAGGTGGGGCAGCCAATCGCGTC
GTATCCCTCCAAATCCTTTCCTTTCTTCCCCGAAATCGCAGGTGCAGAAT
ATGTAAGAAGAAGGTGCAAAATCAATACCACTACTGCCAGGCTTGCGCAT
ATGAG
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