mRNA_P-wetherbeei_contig9522.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9522.1.1
Unique NamemRNA_P-wetherbeei_contig9522.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9522.1.1 vs. uniprot
Match: B8C3C1_THAPS (Nuclear transport factor 2 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3C1_THAPS)

HSP 1 Score: 79.7 bits (195), Expect = 1.270e-17
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 1
Query:   37 KTLDVQPSVDPNALCIFVTGHVKIDGGNPLQFAEFFHLVKTPTGQWIVHNEMFRFIYS 210
            KT D+QPS DPNA+ IFVTG ++I G NPL F EFFHLV T  GQ+ VHN++FR  Y 
Sbjct:   63 KTTDIQPSNDPNAIVIFVTGAIQIGGDNPLHFCEFFHLVGTGPGQYYVHNDVFRLNYG 120          
BLAST of mRNA_P-wetherbeei_contig9522.1.1 vs. uniprot
Match: A0A836CA84_9STRA (Nuclear transport factor 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA84_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.750e-17
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 1
Query:   22 LDFSAKTLDVQPSVDPNALCIFVTGHVKIDGGNPLQFAEFFHLVKTPTGQWIVHNEMFRFIYS 210
            L F   TLDVQPSVD NA+CI +TG VKID  NP+ + +FF LV +   Q+ VHN++FR +Y+
Sbjct:   58 LAFDQNTLDVQPSVDANAICIHITGKVKIDSNNPIHYTQFFQLVASGPSQYYVHNDIFRLVYA 120          
BLAST of mRNA_P-wetherbeei_contig9522.1.1 vs. uniprot
Match: A0A7S1UZF9_9STRA (Nuclear transport factor 2 n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UZF9_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.180e-15
Identity = 33/58 (56.90%), Postives = 41/58 (70.69%), Query Frame = 1
Query:   37 KTLDVQPSVDPNALCIFVTGHVKIDGGNPLQFAEFFHLVKTPTGQWIVHNEMFRFIYS 210
            K+ DVQPS DPNA+ IFVTG VKI G NPL + E F L+ T  GQ+++HN +FR  Y 
Sbjct:   63 KSTDVQPSNDPNAILIFVTGAVKIGGDNPLHYCEMFQLIATAPGQYVIHNNVFRLNYG 120          
BLAST of mRNA_P-wetherbeei_contig9522.1.1 vs. uniprot
Match: A0A7S3L787_9STRA (Nuclear transport factor 2 (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L787_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.210e-15
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 1
Query:   37 KTLDVQPSVDPNALCIFVTGHVKIDGGNPLQFAEFFHLVKTPTGQWIVHNEMFRFIYS 210
            K++DVQPS +P A+ IFVTG V+IDGGNPL F E F LV T  G + VHN++FR  Y 
Sbjct:   64 KSMDVQPSQNPQAMIIFVTGTVRIDGGNPLHFCEVFQLVSTGPGAYYVHNDVFRLNYG 121          
BLAST of mRNA_P-wetherbeei_contig9522.1.1 vs. uniprot
Match: B7G8V7_PHATC (Nuclear transport factor 2 n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G8V7_PHATC)

HSP 1 Score: 73.9 bits (180), Expect = 2.370e-15
Identity = 34/66 (51.52%), Postives = 43/66 (65.15%), Query Frame = 1
Query:   13 TTHLDFSAKTLDVQPSVDPNALCIFVTGHVKIDGGNPLQFAEFFHLVKTPTGQWIVHNEMFRFIYS 210
            T  +  + K+ DVQPS +PNA+ IFVTG +KI G NPL F E F LV T  G + VHN++FR  Y 
Sbjct:   55 TGQVQHTVKSTDVQPSSNPNAILIFVTGSIKIGGDNPLHFCEMFQLVSTAPGAYYVHNDIFRLNYG 120          
BLAST of mRNA_P-wetherbeei_contig9522.1.1 vs. uniprot
Match: A0A7S3NPH7_9STRA (Nuclear transport factor 2 n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NPH7_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.250e-12
Identity = 29/58 (50.00%), Postives = 42/58 (72.41%), Query Frame = 1
Query:   37 KTLDVQPSVDPNALCIFVTGHVKIDGGNPLQFAEFFHLVKTPTGQWIVHNEMFRFIYS 210
            +T++VQPSV PNA+ IFVTG + I+   PL++ + F LV    GQ+ +HN++FRF YS
Sbjct:   64 QTIEVQPSVTPNAILIFVTGQIMIEQDKPLKYTQLFQLVGEGPGQYYLHNDIFRFNYS 121          
BLAST of mRNA_P-wetherbeei_contig9522.1.1 vs. uniprot
Match: A0A7S1FRI8_9STRA (Nuclear transport factor 2 n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FRI8_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 5.940e-11
Identity = 30/56 (53.57%), Postives = 37/56 (66.07%), Query Frame = 1
Query:   43 LDVQPSVDPNALCIFVTGHVKIDGGNPLQFAEFFHLVKTPTGQWIVHNEMFRFIYS 210
            +D QPS +PNA+ IFVTG VKI G N + F E F L+ T  G + VHNE+FR  Y 
Sbjct:   67 VDCQPSNNPNAILIFVTGSVKIGGPNAVHFCEMFQLLSTGPGAYHVHNEIFRLNYG 122          
BLAST of mRNA_P-wetherbeei_contig9522.1.1 vs. uniprot
Match: M2QBP8_CERS8 (Nuclear transport factor 2 n=1 Tax=Ceriporiopsis subvermispora (strain B) TaxID=914234 RepID=M2QBP8_CERS8)

HSP 1 Score: 55.1 bits (131), Expect = 6.140e-8
Identity = 28/65 (43.08%), Postives = 41/65 (63.08%), Query Frame = 1
Query:   19 HLDFSAKTLDVQPSVDPNALCIFVTGHVKIDGG-NPLQFAEFFHLVKTPTGQWIVHNEMFRFIYS 210
            ++     TLD QPS +P A+ + VTG + +DGG NPLQF++ F LV +  G + V N++FR  Y 
Sbjct:   60 NVQHKVTTLDAQPSTNPGAIIVSVTGLLLVDGGENPLQFSQVFQLVPSD-GTYFVFNDIFRLNYG 123          
BLAST of mRNA_P-wetherbeei_contig9522.1.1 vs. uniprot
Match: A0A2C6ABI9_9HYPO (Nuclear transport factor 2 n=1 Tax=Cordyceps sp. RAO-2017 TaxID=2004951 RepID=A0A2C6ABI9_9HYPO)

HSP 1 Score: 53.5 bits (127), Expect = 2.490e-7
Identity = 23/59 (38.98%), Postives = 37/59 (62.71%), Query Frame = 1
Query:   37 KTLDVQPSVDPNALCIFVTGHVKIDGGN-PLQFAEFFHLVKTPTGQWIVHNEMFRFIYS 210
             TLD QPS+   ++ I VTG + +D    P+ F + F LV+ P+GQ+ V N++F+ +Y 
Sbjct:   67 STLDAQPSITEGSIVILVTGQLLVDEEQRPMNFTQTFQLVRDPSGQYFVFNDIFKLVYG 125          
BLAST of mRNA_P-wetherbeei_contig9522.1.1 vs. uniprot
Match: A0A024GPP1_9STRA (Nuclear transport factor 2 n=2 Tax=Albugo TaxID=65356 RepID=A0A024GPP1_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 2.560e-6
Identity = 24/55 (43.64%), Postives = 33/55 (60.00%), Query Frame = 1
Query:   46 DVQPSVDPNALCIFVTGHVKIDGGNPLQFAEFFHLVKTPTGQWIVHNEMFRFIYS 210
            DVQ S    A+ IFV G V+ID    +QF + F LV   +GQ+ +HN++FR  Y 
Sbjct:   67 DVQMSTSNTAMIIFVQGKVQIDENPQVQFTQVFQLVAIASGQYYIHNDIFRLQYG 121          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9522.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
B8C3C1_THAPS1.270e-1762.07Nuclear transport factor 2 n=1 Tax=Thalassiosira p... [more]
A0A836CA84_9STRA1.750e-1753.97Nuclear transport factor 2 n=1 Tax=Tribonema minus... [more]
A0A7S1UZF9_9STRA1.180e-1556.90Nuclear transport factor 2 n=1 Tax=Grammatophora o... [more]
A0A7S3L787_9STRA1.210e-1558.62Nuclear transport factor 2 (Fragment) n=1 Tax=Amph... [more]
B7G8V7_PHATC2.370e-1551.52Nuclear transport factor 2 n=3 Tax=Phaeodactylum t... [more]
A0A7S3NPH7_9STRA1.250e-1250.00Nuclear transport factor 2 n=1 Tax=Aureoumbra lagu... [more]
A0A7S1FRI8_9STRA5.940e-1153.57Nuclear transport factor 2 n=1 Tax=Corethron hystr... [more]
M2QBP8_CERS86.140e-843.08Nuclear transport factor 2 n=1 Tax=Ceriporiopsis s... [more]
A0A2C6ABI9_9HYPO2.490e-738.98Nuclear transport factor 2 n=1 Tax=Cordyceps sp. R... [more]
A0A024GPP1_9STRA2.560e-643.64Nuclear transport factor 2 n=2 Tax=Albugo TaxID=65... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9522contigP-wetherbeei_contig9522:1886..2271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog35128.Thaps22822
PFAMsNTF2
Model size213
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.08e-18
EggNOG OGsKOG2104@1|root,KOG2104@2759|Eukaryota,2XGCS@2836|Bacillariophyta
Ec32 ortholog descriptionNuclear transport factor 2
Ec32 orthologEc-02_000700.1
DescriptionNuclear transport factor 2 (NTF2) domain
Cds size213
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187097.2920306-CDS-P-wetherbeei_contig9522:1885..19901683187097.2920306-CDS-P-wetherbeei_contig9522:1885..1990Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9522 1886..1990 +
1683187097.3031855-CDS-P-wetherbeei_contig9522:2163..22711683187097.3031855-CDS-P-wetherbeei_contig9522:2163..2271Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9522 2164..2271 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9522.1.1prot_P-wetherbeei_contig9522.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9522 1886..2271 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9522.1.1

>prot_P-wetherbeei_contig9522.1.1 ID=prot_P-wetherbeei_contig9522.1.1|Name=mRNA_P-wetherbeei_contig9522.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=71bp
MWLQTTHLDFSAKTLDVQPSVDPNALCIFVTGHVKIDGGNPLQFAEFFHL
VKTPTGQWIVHNEMFRFIYS*
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mRNA from alignment at P-wetherbeei_contig9522:1886..2271+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9522.1.1 ID=mRNA_P-wetherbeei_contig9522.1.1|Name=mRNA_P-wetherbeei_contig9522.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=386bp|location=Sequence derived from alignment at P-wetherbeei_contig9522:1886..2271+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTGGTTACAGACGACGCACCTGGATTTCTCGGCCAAGACACTGGACGT GCAACCGTCCGTCGACCCAAACGCACTCTGTATTTTCGTAACCGGGCACG TTAAGGTGAGCCTGCTGCCGGGGGAGAACCGAAGATCCGGGCAAAACCTG GCAAATGTCTGAGCAGAGCCGGCAAGAGCAGGAGTACCATTTTGTTCTTC TTGCTTGCGCGCCGCTTGTTTATTGCTGTCTCATTCGCCGCTCGTTCGTT TCTGCTCGCGGCCGTCTTCCTTCGACAGATCGACGGCGGCAACCCGTTGC AATTCGCAGAGTTTTTCCACCTCGTCAAGACCCCAACCGGCCAGTGGATC GTGCACAACGAGATGTTCCGGTTCATATACTCCTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9522:1886..2271+

>mRNA_P-wetherbeei_contig9522.1.1 ID=mRNA_P-wetherbeei_contig9522.1.1|Name=mRNA_P-wetherbeei_contig9522.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=213bp|location=Sequence derived from alignment at P-wetherbeei_contig9522:1886..2271+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTGGTTACAGACGACGCACCTGGATTTCTCGGCCAAGACACTGGACGT
GCAACCGTCCGTCGACCCAAACGCACTCTGTATTTTCGTAACCGGGCACG
TTAAGATCGACGGCGGCAACCCGTTGCAATTCGCAGAGTTTTTCCACCTC
GTCAAGACCCCAACCGGCCAGTGGATCGTGCACAACGAGATGTTCCGGTT
CATATACTCCTAA
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