mRNA_P-wetherbeei_contig9510.1.5 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9510.1.5
Unique NamemRNA_P-wetherbeei_contig9510.1.5
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9510.1.5 vs. uniprot
Match: A0A836CC34_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC34_9STRA)

HSP 1 Score: 254 bits (650), Expect = 1.880e-82
Identity = 128/238 (53.78%), Postives = 169/238 (71.01%), Query Frame = 1
Query:    1 LQD--SGPRMLRR--GSRQVPLDQQPFNELQNLKASLLGEAPLFGWAQLDLKGLVFRLLGVYGMGLFISYPIAKVTFPADAQVLESWLAANVGALALVTVLVLRLWVGWSYVKGRLEAEAVEYEETSWYDGATWVKPPAVRARDEMLSAYEVRPVLERMQKALGSLAGAFAVTVIAFKLVVPGDPYEQFSTGYLDGLQGDDFKARTAA--SKSQG---KPTYCGARFYRALSGGSGCD 687
            LQD   GP++LRR  G ++VPLDQQPFNELQNLK     EAP+FGWAQ DL   + RL GVY  G  +S+PIA+VTFP D Q  +  LA N+GAL LVT L LRL+ GW YV  RL+ + V YE++ WYDG+T+ KPP V+ARD+MLS YE RPVL+R++  L  LA  F  T++A++++VP DPYE +   YL  L  +++KA+  A  SK+ G   +P YCG+R+Y+AL+GG+GCD
Sbjct:    7 LQDVQGGPKILRRARGGKKVPLDQQPFNELQNLK-----EAPMFGWAQKDLNSFLLRLGGVYTGGALVSFPIARVTFPGDDQFAQLVLATNIGALGLVTALTLRLYAGWDYVAQRLDEDVVAYEQSGWYDGSTYAKPPDVQARDQMLSIYEARPVLKRLRVTLAVLASLFVTTIVAYRVLVPTDPYEMYGDAYLKDLPANEWKAKETAEASKAAGAKARPAYCGSRYYKALAGGNGCD 239          
BLAST of mRNA_P-wetherbeei_contig9510.1.5 vs. uniprot
Match: D7FZ05_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ05_ECTSI)

HSP 1 Score: 221 bits (563), Expect = 2.060e-69
Identity = 115/232 (49.57%), Postives = 155/232 (66.81%), Query Frame = 1
Query:    1 LQDSGPRMLRRG---SRQVPLDQQPFNELQNLKASLLGEAPLFGWAQLDLKGLVFRLLGVYGMGLFISYPIAKVTFPADAQVLESWLAANVGALALVTVLVLRLWVGWSYVKGRLEAEAVEYEETSWYDGATWVKPPAVRARDEMLSAYEVRPVLERMQKALGSLAGAFAVTVIAFKLVVPGDPYEQFSTGYLDGLQGDDF----KARTAASKSQGKPTYCGARFYRALSGG 675
            +QD G   +RR    SR VP DQQPFNELQ LK     E PLFGWAQ D KGLV RL  +Y + + +S PI   TFP   Q+ E+ LAAN+G L ++  + +RL+ GW+YV  RL AE VEYEE+ WYDG+ W KPP +RARDEML+ YEV+P ++R++  LG++   F +TV+ FK+VVP DPY      YL+ L+GDD      A+ AA++   +P YC +R+Y+A++GG
Sbjct:    1 MQDRGGVRVRRRMDKSRTVPTDQQPFNELQELK-----EDPLFGWAQEDSKGLVTRLALIYAVAMAVSIPIGTTTFPN--QLPEALLAANIGGLGVLLAVAIRLYSGWNYVSLRLGAEVVEYEESGWYDGSEWYKPPDIRARDEMLNNYEVQPAVDRLKAVLGAIGLGFILTVVGFKVVVPDDPYAMLDDTYLNTLKGDDDIANDAAKKAAARGTNRPVYCESRYYQAMAGG 225          
BLAST of mRNA_P-wetherbeei_contig9510.1.5 vs. uniprot
Match: A0A6H5KZL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZL7_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 4.760e-69
Identity = 116/236 (49.15%), Postives = 156/236 (66.10%), Query Frame = 1
Query:    1 LQDSGPRMLRRG---SRQVPLDQQPFNELQNLKASLLGEAPLFGWAQLDLKGLVFRLLGVYGMGLFISYPIAKVTFPADAQVLESWLAANVGALALVTVLVLRLWVGWSYVKGRLEAEAVEYEETSWYDGATWVKPPAVRARDEMLSAYEVRPVLERMQKALGSLAGAFAVTVIAFKLVVPGDPYEQFSTGYLDGLQGDDF----KARTAASKSQGKPTYCGARFYRALSGGSGCD 687
            +QD G   +RR    SR VP DQQPFNELQ LK     E PLFGWAQ D KGLV RL  +Y + + +S PI   TFP   Q+ E+ LAAN+G L ++  + +RL+ GW+YV  RL AE VEYEE+ WYDG+ W KPP +RARDEML+ YEV+P ++R++  L ++   F +TV+ FK+VVP DPY      YL+ L+GDD      A+ AA++   +P YC +R+Y+A++GG  CD
Sbjct:   82 MQDRGGVRVRRRMDKSRTVPTDQQPFNELQELK-----EDPLFGWAQEDSKGLVTRLALIYAVAMAVSIPIGTTTFPN--QLPEALLAANIGGLGVLLAVAIRLYSGWNYVSLRLGAEVVEYEESGWYDGSEWYKPPDIRARDEMLNNYEVQPAVDRLKAVLAAIGLGFMLTVVGFKVVVPDDPYAMLDDTYLNTLKGDDDIANDAAKKAAARGTNRPVYCESRYYQAMAGGGLCD 310          
BLAST of mRNA_P-wetherbeei_contig9510.1.5 vs. uniprot
Match: A0A6U1LWA6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1LWA6_9STRA)

HSP 1 Score: 215 bits (547), Expect = 5.530e-66
Identity = 109/215 (50.70%), Postives = 150/215 (69.77%), Query Frame = 1
Query:   46 VPLDQQPFNELQNLKASLLGEAPLFGWAQLDLKGLVFRLLGVYGMGLF-ISYPIAKVTFPADAQVLESWLAANVGALALVTVLVLRLWVGWSYVKGRLEAEAVEYEETSWYDGATWVKPPAVRARDEMLSAYEVRPVLERMQKALGSLAGAFAVTVIAFKLVVPGDPYEQFSTGYLDGLQGDDFKARTAASKSQGKPTYCGARFYRALSGGSGCD 687
            VPLDQQPFNEL NLK     +AP FGWAQ DLK L+ RL  VY +    +SYPI+  T+P   Q+LE   AAN+G + +V VLVLRL+VGW+Y+  +L +E VEYEET WYDGA WVKP  V+ RD+ ++ YEV+PV+ERM+K +G       ++V+AFKL+  GD Y+ +    L  LQ D+  A   A++++GKPTYCG+R+Y+ ++GG+ C+
Sbjct:   95 VPLDQQPFNELTNLK-----KAPFFGWAQKDLKFLLGRLGMVYALFFITLSYPISYATYPYGDQLLERLAAANLGNIIVVAVLVLRLYVGWAYIYDKLGSEVVEYEETGWYDGAQWVKPANVKTRDQFIATYEVKPVVERMEKIVGVFGVLVLLSVLAFKLLSVGD-YDPYDPKILQTLQMDENAAIKDAAQNRGKPTYCGSRYYKTVAGGNNCE 303          
BLAST of mRNA_P-wetherbeei_contig9510.1.5 vs. uniprot
Match: A0A7S2F0W8_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F0W8_9STRA)

HSP 1 Score: 197 bits (502), Expect = 6.220e-59
Identity = 105/217 (48.39%), Postives = 142/217 (65.44%), Query Frame = 1
Query:   46 VPLDQQPFNELQNLKASLLGEAPLFGWAQLDLKGLVFRLLGVYGMG-LFISYPIAKVTFPADAQVLESWLAANVGALALVTVLVLRLWVGWSYVKGRLEAEAVEYEETSWYDGATWVKPPAVRARDEMLSAYEVRPVLERMQKALGSLAGAFAVTVIAFKLVVPGDPYEQFSTGYLDGLQGDDFKARTAASKS---QGKPTYCGARFYRALSGGSGC 684
            VP  QQP  EL++LKA     AP FGWAQL+    + ++  +YG   +F S  IA +T+  D Q L++ LAANVG++AL  V+++RL+VGWSYV  RLE +   YEE+ WYDG   VKP  VRARDE+L  +EV PVL R+ K    +  AF  +++AFKL  P DPY QF + YLD L+GDD  A   A ++     KPTYC +R+Y+A++GG+GC
Sbjct:  114 VPEGQQPAQELEDLKA-----APFFGWAQLEDGEFLTKVSYLYGASFIFPSLAIAAITYELDRQPLQALLAANVGSMALTFVILVRLYVGWSYVGDRLEKDVGYYEESGWYDGFLSVKPKDVRARDELLFKFEVEPVLARVTKFTALVGVAFIASILAFKLAAPLDPYGQFESSYLDNLRGDDAAAMREAQEAGARSNKPTYCDSRYYKAVAGGNGC 325          
BLAST of mRNA_P-wetherbeei_contig9510.1.5 vs. uniprot
Match: A0A7S1TYX4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYX4_9STRA)

HSP 1 Score: 166 bits (421), Expect = 7.240e-47
Identity = 95/224 (42.41%), Postives = 135/224 (60.27%), Query Frame = 1
Query:   28 RRGSRQVPLDQQPFNELQNLKASLLGEAPLFGWAQLDLKGLVFRLLGVYGMGLFIS--YPIAKVTFPADAQVLESWLAANVGALALVTVLVLRLWVGWSYVKGRLEAEAVEYEETSWYDGATWVKPPAVRARDEMLSAYEVRPVLERMQKALGSLAGAFAVTVIAFKLVVPGDPYEQFSTGYLDGLQGDDFKARTA--ASKSQGKPTYCGARFYRALSGGSGCD 687
            R   R   ++Q P  EL++L+     +APLF WAQLD    + R+  VY  G F+    PIA VT+P + + L ++LA + GA  LV +L++RL VGWSY+K RLE++ ++YEET WYDG    K   V  RD++LS+ EV PVL R+ KA  +  G F  + +  K+  P DPY  F   YL+ L  DD  A  A  A+ S+G+P YC +R+YR ++G S C+
Sbjct:  102 RERQRAAMIEQGPAAELKDLQ-----KAPLFSWAQLDDVPFLQRMGLVYA-GAFVGAGLPIALVTYPREDERLVAFLAGSAGATFLVLMLIVRLAVGWSYIKDRLESDVLDYEETGWYDGFRSTKSKDVANRDKLLSSLEVVPVLTRLTKAGVAFGGLFLASCLLLKVAAPTDPYAMFDPEYLETLSRDDDAAAEAQRAAASRGRPLYCDSRYYRTVAGASNCN 319          
BLAST of mRNA_P-wetherbeei_contig9510.1.5 vs. uniprot
Match: A0A1Z5K8M1_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K8M1_FISSO)

HSP 1 Score: 155 bits (391), Expect = 3.190e-43
Identity = 89/223 (39.91%), Postives = 130/223 (58.30%), Query Frame = 1
Query:   34 GSRQVPLDQQPFNELQNLKASLLGEAPLFGWAQLDL--KGLVFRLLGVYGMGLF-ISYPIAKVTFPADAQVLESWLAANVGALALVTVLVLRLWVGWSYVKGRLEAEAVEYEETSWYDGATWVKPPAVRARDEMLSAYEVRPVLERMQKALGSLAGAFAVTVIAFKLVVPGDP-YEQFSTGYLDGLQGDDFKARTAASKSQGKPTYCGARFYRALSGGS-GCD 687
            G+  VP  Q+P NE  ++        P+FGWA  +   KGL+ RL+ +Y +    + YPIA  TF  +  +++   AANVGA+ LV V+++RL+ GW Y+  RL ++ +EYEET WYDG   +K P    RD  L A EV+PV+ER++K   + A     +VIAF       P ++Q+    L  L+ D+  A  AAS S  +PTYC  R+YRA++GG  GC+
Sbjct:   29 GAEAVPEAQRPVNEYMDVS-----NQPMFGWANKESGSKGLLTRLVLLYSISFAAVCYPIAGATFTQEGYLVQKLAAANVGAIFLVMVVMIRLYSGWDYLGQRLTSKVIEYEETGWYDGDIEMKTPTELQRDRFLYANEVKPVVERLKKFTMATAALCFASVIAFNAANSAKPMFDQYDPDMLSQLRYDEKLAEQAASSSGSRPTYCDNRYYRAVAGGGQGCN 246          
BLAST of mRNA_P-wetherbeei_contig9510.1.5 vs. uniprot
Match: A0A835Y912_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y912_9CHLO)

HSP 1 Score: 153 bits (386), Expect = 6.230e-42
Identity = 96/236 (40.68%), Postives = 123/236 (52.12%), Query Frame = 1
Query:   46 VPLDQQPFNELQNLKASLLGEAPLFGWAQLDLKGLVFRLLGVYGMGL-FISYPIAKVTFPADAQVLESWLAANVGALALVTVLVLRLWVGWSYVKGRLEAEAVEYEETSWYDGATWVKPPAVRARDEMLSAYEVRPVLERMQKAL-GSLAGAFAVTVIAFKLVVPGD-------------PYEQFSTGYL--------DGLQGDDFKARTAASKSQGKPTYCGARFYRALSGGSGC 684
            VP DQ+P N+L  LK       PL+ W  L+L   V RL GVY     F+  PIA  TF    Q +E +L+   GAL +V V+V+R+++GWSYV  RL + AV YEET WYDG  +VKPP V  RD +L  YEVRPVL +++  L GS A   A +V+ + L+  G              P +  S G L          L  DD  A   A+   G P YCG R  RA +GG  C
Sbjct:   58 VPKDQRPVNQLTELKND-----PLYSWGSLELADYVKRLWGVYAFFFAFVGGPIAYQTFEPTQQPIEWFLSGTTGALLVVAVVVIRIYLGWSYVGDRLLSAAVPYEETGWYDGEMFVKPPEVLMRDRLLGTYEVRPVLAKLRTTLLGSAAALLASSVVLYGLIKAGSDADGFYGRGAARVPRQVLSAGVLYSPRVTDLQQLATDDDAAAAEAAAQGGIPGYCGDRALRAAAGGDVC 288          
BLAST of mRNA_P-wetherbeei_contig9510.1.5 vs. uniprot
Match: A0A1Y1I2X7_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I2X7_KLENI)

HSP 1 Score: 152 bits (383), Expect = 6.990e-42
Identity = 87/236 (36.86%), Postives = 127/236 (53.81%), Query Frame = 1
Query:   43 QVPLDQQPFNELQNLKASLLGEAPLFGWAQLDLKGLVFRLLGVY-GMGLFISYPIAKVTFPADAQVLESWLAANVGALALVTVLVLRLWVGWSYVKGRLEAEAVEYEETSWYDGATWVKPPAVRARDEMLSAYEVRPVLERMQKALGSLAGAFAVTVIAFKLVVP-GDPYEQFS--------------------TGYLDGLQGDDFKARTAASKSQGKPTYCGARFYRALSGGSGC 684
            +VP +Q+P NE + LK     +A L+ WAQLDLK    RLL V+ G  +F+  PIA  +F    + LE +LA   GAL    +LVLR+++GWSYV  RL +  V YEE+ WYDG  WVKPP + ARD +L +Y+V+P+L R+++ L    GA   + ++  L++  G+P +  +                    T   D +             + G+P YC  R+YRAL+GG  C
Sbjct:   21 EVPTEQRPVNEFKALK-----DATLYNWAQLDLKDYSLRLLLVWSGFFVFLGAPIAAASFEPMKEPLEFFLAGGAGALFASAILVLRMYLGWSYVGDRLLSAVVAYEESGWYDGQLWVKPPEILARDRLLGSYQVKPILNRLKQTLLGAGGALMASAVSLALLLQAGEPTDFMARNREIAAALAAKGLPSIDDVTNPPDLVASXXXXXXXXXXXADGRPAYCRDRYYRALAGGQYC 251          
BLAST of mRNA_P-wetherbeei_contig9510.1.5 vs. uniprot
Match: A0A7S2SSW0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSW0_9STRA)

HSP 1 Score: 153 bits (386), Expect = 1.540e-41
Identity = 95/226 (42.04%), Postives = 124/226 (54.87%), Query Frame = 1
Query:    7 DSGPRMLRRGSR-----------------QVPLDQQPFNELQNLKASLLGEAPLFGWAQLD---LKGLVFRLLGVYGMGLFISYPIAKVTFPADAQVLESWLAANVGALALVTVLVLRLWVGWSYVKGRLEAEAVEYEETSWYDGATWVKPPAVRARDEMLSAYEVRPVLERMQKALGSLAGAFAVTVIAFKLVVPGDPYEQFSTGYLDGLQGDDFKARTAASKSQ 624
            +SGPR  RR +R                  VP  QQP  EL +LK      AP+FGW QL+      L+ R  G+  + LF S PIA VT+P   Q L++ LAAN+GA+A+ ++L++RLWVGWSYV  RL  +   YEE+ WYDG   VKP  +R RD++L  +EV PVL R+ K     A    V+  AF+   P DPY  +   YL  LQ DD     AA+K Q
Sbjct:  103 NSGPREYRRPARPRRTREEPQSKLALQDENVPEAQQPAQELADLKV-----APVFGWGQLEDDEFSALIGRTYGI--LLLFPSLPIALVTYPIQTQPLQALLAANLGAVAITSILLIRLWVGWSYVGDRLRKDVGYYEESGWYDGFLSVKPENIRRRDQLLFEFEVLPVLTRLSKFGAGTAAMCLVSFAAFRFAAPEDPYAMYDPEYLAQLQMDD----EAAAKEQ 317          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9510.1.5 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CC34_9STRA1.880e-8253.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FZ05_ECTSI2.060e-6949.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KZL7_9PHAE4.760e-6949.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6U1LWA6_9STRA5.530e-6650.70Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2F0W8_9STRA6.220e-5948.39Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A7S1TYX4_9STRA7.240e-4742.41Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A1Z5K8M1_FISSO3.190e-4339.91Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A835Y912_9CHLO6.230e-4240.68Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A1Y1I2X7_KLENI6.990e-4236.86Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A7S2SSW0_9STRA1.540e-4142.04Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9510contigP-wetherbeei_contig9510:294..2275 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FZ05
Preferred nameCGLD27
PFAMsDUF1230
Model size690
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0006950,GO:0008150,GO:0009605,GO:0009991,GO:0031667,GO:0042594,GO:0050896,GO:1990641
Exons7
Evalue7.45e-70
EggNOG OGs28JNY@1|root,2QS25@2759|Eukaryota
Ec32 ortholog descriptionUncharacterised protein family Ycf36
Ec32 orthologEc-06_002060.1
DescriptionProtein of unknown function (DUF1230)
Cds size669
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9510.1.5prot_P-wetherbeei_contig9510.1.5Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9510 315..2275 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187096.6985712-UTR-P-wetherbeei_contig9510:293..3141683187096.6985712-UTR-P-wetherbeei_contig9510:293..314Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9510 294..314 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187096.7111712-CDS-P-wetherbeei_contig9510:314..3981683187096.7111712-CDS-P-wetherbeei_contig9510:314..398Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9510 315..398 +
1683187096.7197537-CDS-P-wetherbeei_contig9510:594..6831683187096.7197537-CDS-P-wetherbeei_contig9510:594..683Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9510 595..683 +
1683187096.733289-CDS-P-wetherbeei_contig9510:1033..12051683187096.733289-CDS-P-wetherbeei_contig9510:1033..1205Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9510 1034..1205 +
1683187096.7421384-CDS-P-wetherbeei_contig9510:1398..14731683187096.7421384-CDS-P-wetherbeei_contig9510:1398..1473Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9510 1399..1473 +
1683187096.7555184-CDS-P-wetherbeei_contig9510:1734..18211683187096.7555184-CDS-P-wetherbeei_contig9510:1734..1821Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9510 1735..1821 +
1683187096.766132-CDS-P-wetherbeei_contig9510:1934..19791683187096.766132-CDS-P-wetherbeei_contig9510:1934..1979Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9510 1935..1979 +
1683187096.7780557-CDS-P-wetherbeei_contig9510:2158..22751683187096.7780557-CDS-P-wetherbeei_contig9510:2158..2275Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9510 2159..2275 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9510.1.5

>prot_P-wetherbeei_contig9510.1.5 ID=prot_P-wetherbeei_contig9510.1.5|Name=mRNA_P-wetherbeei_contig9510.1.5|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=223bp
MLRRGSRQVPLDQQPFNELQNLKASLLGEAPLFGWAQLDLKGLVFRLLGV
YGMGLFISYPIAKVTFPADAQVLESWLAANVGALALVTVLVLRLWVGWSY
VKGRLEAEAVEYEETSWYDGATWVKPPAVRARDEMLSAYEVRPVLERMQK
ALGSLAGAFAVTVIAFKLVVPGDPYEQFSTGYLDGLQGDDFKARTAASKS
QGKPTYCGARFYRALSGGSGCD*
back to top

mRNA from alignment at P-wetherbeei_contig9510:294..2275+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9510.1.5 ID=mRNA_P-wetherbeei_contig9510.1.5|Name=mRNA_P-wetherbeei_contig9510.1.5|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1982bp|location=Sequence derived from alignment at P-wetherbeei_contig9510:294..2275+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCAGGATAGCGGGCCCCGCATGTTGCGAAGGGGATCGAGGCAGGTGCC ATTGGATCAACAGCCATTCAACGAGCTGCAAAATCTAAAGGCAAGTTTGT TAGGAGTGGTTGCTGAGGCATTGTGACGACTGTGGCAACGCGGGAAACGG AAGCTCTTGGCGTTTCGCGTCGGTTTGCTACGCTTGAGAGCCATCCTGCT TGCATGTTTTATGCCTGTTCTCTTGCCCCCCTTCCTCTCCTGTCTTATTT TTGACTGACTCATTGGTCGGTCGCTCCACCCCTGATTTCTGCTTCGGGCA GGAGGCACCGCTGTTTGGGTGGGCGCAACTCGATCTAAAAGGGCTGGTAT TTCGGCTTCTGGGCGTGTACGGCATGGGGCTGTTCATTAGGTCAGCTGTG TGACTCGCAAGCGAATCCCGCTTTCCAATTGTGCAGCGGTGGTCTGGGCC GCTGGCTCTTTCAGCTGTATTGGAGCGCACTGATCTTTATCCCATGTCTT GCCGGGACAAGGTGCCCGCGCGGTCTTGTTTTATGTCTGTTTGACGTCCA TTCTGAATTCAAGTGCTGCATCTTCCGGGACCACCTCGCTCTGCCGGCCA TGCCTGCCGCCGCTTGGCTGCTCTTCCCTCGCCAATTCCCGTCCTCGTCA CGCCGGTAACCGCATTGCGCGTCGTCCTGGACCGATGAAACCGGAATATT GAACCTGGACGGGGTTCAAACTGTTTGCGAATCGTCCCAGCTACCCGATC GCCAAGGTGACCTTCCCGGCGGACGCCCAGGTCCTCGAGAGCTGGCTGGC GGCCAATGTCGGGGCGCTCGCCCTCGTGACGGTGCTTGTGCTGCGGTTGT GGGTGGGGTGGTCCTACGTCAAGGGGCGGCTGGAGGCAGAGGCGGTCGAG TACGAAGAGACGGTGAGCGGACGTCTTTCTTTTTTTGTGGAGGTTTGGGT AGTTTTGAGAACGTAAGCGAATGTTGGCGCAGTTTTCTGTATTTTTCACG CTGCTAGAGCTGATATCCCGGTTCAATTCTGCTGTACCCATGTTTCATCG AAGTTCTGTTGCGTAACTGTTTCAAGCACTTTTCTTTTCCCGCTTATTTC GGCAGTCGTGGTACGACGGCGCGACGTGGGTAAAGCCGCCGGCAGTGCGT GCGCGTGATGAGATGCTCAGCGCCTACGAGGTGATTGATTATTTGAAATG GATTACTTTTTGATGGCCGGTGTCTTTGCATTTATTGCTCGCCGTTTCAT TTTTGAAGCATTTTTCTGGTTTGCGCCGTTACTTACCTGAAGCGTTTTTC CTGATTTGTGATTCTTGGCACCGCGGTGCACCTGTGCTATGTCCTCACGG TTTCCTTCTAGTGCAGATGCACAGCGGTCATGTCTCGCTTACACCTTTAG AGCATGTTGCTGATGCACATCGCCATCCATACATCATCCAGGTGCGGCCG GTCTTGGAGCGGATGCAAAAGGCGCTGGGGTCGCTAGCCGGCGCATTTGC CGTCACAGTGATTGCGTTCAAGTTGGTGGTAAGACAGGCATCCTCTCGTT GTAGCTCGTAGCGATGTACTGCAGCGAAGCTCTTGCTGACAGACACTCTT CCCCTGCGAACCCCGTTATCATTTCTTTCTGCTCTATCAAGGTGCCGGGA GATCCGTACGAGCAGTTTTCGACCGGTTATCTGGACGTACGTATGCGACT CTGCTTTTCTTCCCCCTTCAAGCCCTCGGAAAGCGACTTGCTGTATATTG TTGCTAGCTTAATCCTTGAAAGGTCACTTCGCTTCGCTTTGTTTATTGCC GAAGTAGGAGTCCCTTCTGACTTTTCACTGCGGCATCTGCTGTACGCGTG TGCCGGCGGCGGCAGGGGTTGCAAGGCGATGATTTCAAGGCGCGGACGGC GGCTTCGAAAAGCCAGGGGAAGCCAACGTACTGCGGTGCACGCTTTTATC GTGCCCTATCTGGTGGATCTGGATGCGACTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig9510:294..2275+

>mRNA_P-wetherbeei_contig9510.1.5 ID=mRNA_P-wetherbeei_contig9510.1.5|Name=mRNA_P-wetherbeei_contig9510.1.5|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=669bp|location=Sequence derived from alignment at P-wetherbeei_contig9510:294..2275+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTGCGAAGGGGATCGAGGCAGGTGCCATTGGATCAACAGCCATTCAA
CGAGCTGCAAAATCTAAAGGCAAGTTTGTTAGGAGAGGCACCGCTGTTTG
GGTGGGCGCAACTCGATCTAAAAGGGCTGGTATTTCGGCTTCTGGGCGTG
TACGGCATGGGGCTGTTCATTAGCTACCCGATCGCCAAGGTGACCTTCCC
GGCGGACGCCCAGGTCCTCGAGAGCTGGCTGGCGGCCAATGTCGGGGCGC
TCGCCCTCGTGACGGTGCTTGTGCTGCGGTTGTGGGTGGGGTGGTCCTAC
GTCAAGGGGCGGCTGGAGGCAGAGGCGGTCGAGTACGAAGAGACGTCGTG
GTACGACGGCGCGACGTGGGTAAAGCCGCCGGCAGTGCGTGCGCGTGATG
AGATGCTCAGCGCCTACGAGGTGCGGCCGGTCTTGGAGCGGATGCAAAAG
GCGCTGGGGTCGCTAGCCGGCGCATTTGCCGTCACAGTGATTGCGTTCAA
GTTGGTGGTGCCGGGAGATCCGTACGAGCAGTTTTCGACCGGTTATCTGG
ACGGGTTGCAAGGCGATGATTTCAAGGCGCGGACGGCGGCTTCGAAAAGC
CAGGGGAAGCCAACGTACTGCGGTGCACGCTTTTATCGTGCCCTATCTGG
TGGATCTGGATGCGACTGA
back to top