mRNA_P-wetherbeei_contig95.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig95.1.1
Unique NamemRNA_P-wetherbeei_contig95.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig95.1.1 vs. uniprot
Match: A0A6H5JZM9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZM9_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 4.960e-25
Identity = 107/215 (49.77%), Postives = 131/215 (60.93%), Query Frame = 1 
Query:    1 QVSELDPRAAKKHGVFVASGARETLLHEEHCTLEAGQSRALDFRVGPYSRPEFSGRYGGGFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXADGCGGXXXXXXAAAATPAAADGSGQVVIGLIVALTFQGNFEKHGYRLGRLAANLYRLPPPPKAPTLQKHDA------VGFAPAVLQSLHTPGSMGRIMIFHRPARGPIWPGTFRLVAGAASRVR 627
            +V + DP   ++ G+ VAS  R  LL  E   L+AGQS+A  F VGPY         GG   XXXXXXXXXXXXXXXXXXXXXXXXX    D             +T   A+ + +VV+G+ V + FQGNFE  GYRLGRLAA LYR+PP  +    Q  D       VGFAP  LQSL+TP S+GR+MIFH+P   P+  G F++V GAASRV+
Sbjct: 1932 RVRDFDP--GERRGLLVASRRRTCLLEVETSELQAGQSKAYAFEVGPYGT-------GGDXXXXXXXXXXXXXXXXXXXXXXXXXXXSVGGDS------RDSETGSTGTTAEAA-KVVVGIAVTVVFQGNFETDGYRLGRLAAGLYRMPP--EFGQRQAEDGAGLPEPVGFAPYSLQSLNTPESLGRVMIFHQPRVHPVRAGRFQVVIGAASRVK 2128
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BLAST of mRNA_P-wetherbeei_contig95.1.1 vs. uniprot
Match: D8LJN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJN6_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 3.670e-21
Identity = 54/99 (54.55%), Postives = 68/99 (68.69%), Query Frame = 1 
Query:  343 GQVVIGLIVALTFQGNFEKHGYRLGRLAANLYRLPPP----PKAPTLQKHDAVGFAPAVLQSLHTPGSMGRIMIFHRPARGPIWPGTFRLVAGAASRVR 627
            G+VV+G+ V + FQGNFE  GYRLGRLAA LYR+PP           +    VGFAP  LQSL+TP S+GR+MIFH+P   P+  G F++V GAASRV+
Sbjct: 1760 GEVVVGIAVTVVFQGNFETDGYRLGRLAAGLYRMPPAFGQGQAEDGAELPQPVGFAPYSLQSLNTPESIGRVMIFHQPRVHPVRAGRFQVVIGAASRVK 1858
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BLAST of mRNA_P-wetherbeei_contig95.1.1 vs. uniprot
Match: A0A482SSE9_9ARCH (EF-hand domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SSE9_9ARCH)

HSP 1 Score: 83.6 bits (205), Expect = 4.930e-15
Identity = 45/95 (47.37%), Postives = 64/95 (67.37%), Query Frame = 1 
Query:  334 DGSGQVVIGLIVALTFQGNFEKHGYRLGRLAANLYRLPPPPKAPTLQKHDAVGFAPAVLQSLHTPGSMGRIMIFHRPARGPIWPGTFRLVAGAAS 618
            D   Q ++ L V++ FQG F   GYRLGR+AA+L+RLPP  KA  L     VG++P    S + P SMGRI+I+H+P + P+ PGTF+L+ G+A+
Sbjct: 1904 DRESQRILELTVSIVFQGTFATTGYRLGRIAASLFRLPPDDKAGILPPV-RVGYSPYEGVSPNLPDSMGRIVIYHKPKQRPLPPGTFQLIIGSAA 1997
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BLAST of mRNA_P-wetherbeei_contig95.1.1 vs. uniprot
Match: A0A2D7DTQ6_9SPIO (Uncharacterized protein n=1 Tax=Spirochaeta sp. TaxID=28185 RepID=A0A2D7DTQ6_9SPIO)

HSP 1 Score: 61.6 bits (148), Expect = 1.640e-7
Identity = 32/91 (35.16%), Postives = 52/91 (57.14%), Query Frame = 1 
Query:  355 IGLIVALTFQGNFEKHGYRLGRLAANLYRLPPPPKAPTLQKHDAVGFAPAVLQSLHTPGSMGRIMIFHRPARGPIWPGTFRLVAGAASRVR 627
            + L + + ++G F   GYRLGR+AA L+R+P   K   L     +G+AP   Q L+T  + G+ ++ H P+  P+  G + +V GAAS  +
Sbjct: 1405 LSLTITVVYRGVFTARGYRLGRIAATLFRVPT--KRDGLSPPIPIGYAPYESQQLNTGTTFGKTVLVHDPSEKPLKSGVYNVVLGAASATK 1493
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BLAST of mRNA_P-wetherbeei_contig95.1.1 vs. uniprot
Match: A0A8J2SQY8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SQY8_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 3.050e-7
Identity = 32/91 (35.16%), Postives = 52/91 (57.14%), Query Frame = 1 
Query:  355 IGLIVALTFQGNFEKHGYRLGRLAANLYRLPPPPKAPTLQKHDAVGFAPAVLQSLHTPGSMGRIMIFHRPARGPIWPGTFRLVAGAASRVR 627
            + L + + ++G F   GYRLGR+AA L+RLP   +   L     +G+AP   Q L+T  + G+ ++ H P+  P+  G + +V GAAS  +
Sbjct: 1993 LSLTITVVYRGVFTARGYRLGRIAATLFRLPTKGQ---LSPPIPIGYAPYSSQQLNTGTTFGKTVLVHDPSEKPLKSGVYNVVLGAASATK 2080
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig95.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JZM9_9PHAE4.960e-2549.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJN6_ECTSI3.670e-2154.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A482SSE9_9ARCH4.930e-1547.37EF-hand domain-containing protein n=1 Tax=archaeon... [more]
A0A2D7DTQ6_9SPIO1.640e-735.16Uncharacterized protein n=1 Tax=Spirochaeta sp. Ta... [more]
A0A8J2SQY8_9STRA3.050e-735.16Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig95contigP-wetherbeei_contig95:1684..2889 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog157072.XP_008879090.1
PFAMsIQ
Model size627
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.58e-05
EggNOG OGs28RFJ@1|root,2QY4N@2759|Eukaryota
Cds size627
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187096.2471483-CDS-P-wetherbeei_contig95:1683..18271683187096.2471483-CDS-P-wetherbeei_contig95:1683..1827Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig95 1684..1827 -
1683187096.2698784-CDS-P-wetherbeei_contig95:2406..28891683187096.2698784-CDS-P-wetherbeei_contig95:2406..2889Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig95 2407..2889 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig95.1.1prot_P-wetherbeei_contig95.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig95 1684..2889 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig95.1.1

>prot_P-wetherbeei_contig95.1.1 ID=prot_P-wetherbeei_contig95.1.1|Name=mRNA_P-wetherbeei_contig95.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=209bp
QVSELDPRAAKKHGVFVASGARETLLHEEHCTLEAGQSRALDFRVGPYSR
PEFSGRYGGGFAPGFGGNAGGYAADGRGGNATNIANDDSGADGCGGGNGN
DGAAAATPAAADGSGQVVIGLIVALTFQGNFEKHGYRLGRLAANLYRLPP
PPKAPTLQKHDAVGFAPAVLQSLHTPGSMGRIMIFHRPARGPIWPGTFRL
VAGAASRVR
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mRNA from alignment at P-wetherbeei_contig95:1684..2889-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig95.1.1 ID=mRNA_P-wetherbeei_contig95.1.1|Name=mRNA_P-wetherbeei_contig95.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1206bp|location=Sequence derived from alignment at P-wetherbeei_contig95:1684..2889- (Phaeothamnion wetherbeei SAG_119_79)
CAGGTCAGCGAATTGGATCCACGGGCCGCAAAGAAGCATGGGGTCTTTGT
GGCGTCTGGCGCCCGGGAGACGCTGCTGCACGAAGAGCACTGCACCCTAG
AGGCCGGGCAGAGCCGGGCGCTCGACTTTCGGGTTGGGCCGTACAGCAGG
CCCGAATTCAGCGGCAGATACGGCGGCGGCTTTGCTCCTGGATTCGGCGG
CAATGCCGGCGGCTACGCTGCCGACGGACGCGGCGGTAATGCAACCAACA
TTGCAAATGACGACAGCGGCGCTGATGGTTGCGGCGGCGGCAATGGAAAC
GATGGAGCCGCAGCGGCAACACCAGCGGCTGCCGACGGCAGCGGACAGGT
AGTAATCGGCCTTATCGTGGCGCTCACATTCCAAGGAAACTTTGAAAAGC
ACGGCTACCGTCTGGGCCGCCTGGCTGCGAACCTGTACCGCCTGCCGCCG
CCTCCGAAGGCGCCCACATTACAGAAGCATGACGTCTTTGTAGCGAACCC
GATCTTCGCAGAGGTAGCAGCAGGACAAGCAGTGACAACGATGGCAGCTT
CGCCGGCAGCGGTAGCTGGGACAGCCACGACAGCTTCGGCGCCGGATGCG
GCAGGGTCTGGAGGCACCACCAGTTCGCGTGATCGAGGTATCACGGCAGA
AGAACCTGGCTTTGAAGACTGCTTTCCTCCTAGAGCTGGATGCTGTGCCG
CTGCAGCAGATGGGGGCGCCGACCGCAGCGACAGCGCCCTCGCCGACGGG
GGCATTAACGAGAGAAGCATGACGGTGGCAGGGTCTGCTGTTTTCAGCGA
CGTTGGCGGCACTGTTACCAGCGGTGCCAACAGGAGCAGCGGTAGCAACG
CCGGAGACAGCGACAGCAGCGGCGGTCACATCGACAGCTGCGACGCAGGG
CTGATGGGCGTCAGCGACAAACCTGGAAGCACTGGCTTGGAGCAGCTGGG
GCGCTCCAGCTCCGGCGACGGCGACAGCGGCGGCGGCGACAGCGGCGGCG
CTACCACTGTCGCCTTCGTGCTGGACGGAGCTCCAGCGCTGCTGCCGCCA
CCGCCGCCGCAGGCCGTCGGATTCGCGCCGGCAGTGCTGCAAAGCCTGCA
CACCCCGGGCAGCATGGGGCGGATCATGATCTTCCACCGCCCGGCGCGCG
GGCCCATCTGGCCCGGGACGTTTCGGCTGGTAGCCGGAGCGGCGTCGAGG
GTAAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig95:1684..2889-

>mRNA_P-wetherbeei_contig95.1.1 ID=mRNA_P-wetherbeei_contig95.1.1|Name=mRNA_P-wetherbeei_contig95.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=627bp|location=Sequence derived from alignment at P-wetherbeei_contig95:1684..2889- (Phaeothamnion wetherbeei SAG_119_79)
CAGGTCAGCGAATTGGATCCACGGGCCGCAAAGAAGCATGGGGTCTTTGT
GGCGTCTGGCGCCCGGGAGACGCTGCTGCACGAAGAGCACTGCACCCTAG
AGGCCGGGCAGAGCCGGGCGCTCGACTTTCGGGTTGGGCCGTACAGCAGG
CCCGAATTCAGCGGCAGATACGGCGGCGGCTTTGCTCCTGGATTCGGCGG
CAATGCCGGCGGCTACGCTGCCGACGGACGCGGCGGTAATGCAACCAACA
TTGCAAATGACGACAGCGGCGCTGATGGTTGCGGCGGCGGCAATGGAAAC
GATGGAGCCGCAGCGGCAACACCAGCGGCTGCCGACGGCAGCGGACAGGT
AGTAATCGGCCTTATCGTGGCGCTCACATTCCAAGGAAACTTTGAAAAGC
ACGGCTACCGTCTGGGCCGCCTGGCTGCGAACCTGTACCGCCTGCCGCCG
CCTCCGAAGGCGCCCACATTACAGAAGCATGACGCCGTCGGATTCGCGCC
GGCAGTGCTGCAAAGCCTGCACACCCCGGGCAGCATGGGGCGGATCATGA
TCTTCCACCGCCCGGCGCGCGGGCCCATCTGGCCCGGGACGTTTCGGCTG
GTAGCCGGAGCGGCGTCGAGGGTAAGG
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