mRNA_P-wetherbeei_contig9452.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9452.1.1
Unique NamemRNA_P-wetherbeei_contig9452.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9452.1.1 vs. uniprot
Match: A0A8J2WE21_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WE21_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 2.280e-20
Identity = 57/133 (42.86%), Postives = 85/133 (63.91%), Query Frame = 1
Query:   13 ESSIQNMIISVTVAIIVVGLATMNWMVVPFVAVCLVTTLLMTLAILVLVGWRINVVESISITIAAGLSVDYVVHILHAY--QDVYGDRQIRIQGSLTKMGVSVTSGVLTTVGAVFVLLFCNLTWFAKFGELVC 405
            +SS  N++ +   A+I++  AT NW+V       LVTT+  TLA++V  GW +NV+ESI ++IA G++VDYV+H+ HAY  QD       R++ ++ +MG+SV SG +TT GA   L  C+L WF  FG  +C
Sbjct:  900 DSSRINIVTAFAFALIIMLCATANWIVTLIAFGSLVTTVSTTLALMVFYGWELNVIESIDVSIAGGMAVDYVLHMSHAYNHQDPTLTSSERVRLAMGEMGISVLSGCITTFGACCALFSCDLLWFKMFGYFIC 1032          
BLAST of mRNA_P-wetherbeei_contig9452.1.1 vs. uniprot
Match: A0A7S1VBT3_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VBT3_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 3.710e-19
Identity = 50/131 (38.17%), Postives = 84/131 (64.12%), Query Frame = 1
Query:   13 ESSIQNMIISVTVAIIVVGLATMNWMVVPFVAVCLVTTLLMTLAILVLVGWRINVVESISITIAAGLSVDYVVHILHAYQDVYGDRQIRIQGSLTKMGVSVTSGVLTTVGAVFVLLFCNLTWFAKFGELVC 405
            +++IQ+ ++ V +A +V+ ++T    +  F ++ +++ L+     +V++GW +  +ESI I I AG SVDYVVH+ HAY+   GD   R+  +   MG+SV +G++T+VGA   L FC L +FAKFG  +C
Sbjct:  911 QTAIQSSVLGVAIAFVVLLISTRVLHIAFFASLSIISVLISVTGTMVILGWTLGSIESILIGIIAGFSVDYVVHLAHAYKTASGDTYERVTEAFADMGISVLNGMITSVGASIPLFFCQLQFFAKFGTFLC 1041          
BLAST of mRNA_P-wetherbeei_contig9452.1.1 vs. uniprot
Match: A0A7S0GLU2_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GLU2_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.230e-18
Identity = 50/131 (38.17%), Postives = 84/131 (64.12%), Query Frame = 1
Query:   13 ESSIQNMIISVTVAIIVVGLATMNWMVVPFVAVCLVTTLLMTLAILVLVGWRINVVESISITIAAGLSVDYVVHILHAYQDVYGDRQIRIQGSLTKMGVSVTSGVLTTVGAVFVLLFCNLTWFAKFGELVC 405
             S++Q+ ++ V +A  V+ ++T  + +  F  + +++ LL  +  +VL+GW +  +E+I I+I AG SVDYVVH+ H+Y    GD   R+Q + ++MG SV +G++T+VGA   L FC L +F KFG  +C
Sbjct:  534 RSAVQSSVLGVFIAFAVLLMSTRVFHIALFATLSIMSVLLSIIGTMVLLGWSLGSIEAILISIVAGFSVDYVVHLAHSYNHSSGDTNERLQSAFSEMGSSVLNGMVTSVGASIPLFFCQLQFFKKFGTFLC 664          
BLAST of mRNA_P-wetherbeei_contig9452.1.1 vs. uniprot
Match: A0A7S4VPR6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VPR6_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 3.130e-18
Identity = 51/130 (39.23%), Postives = 79/130 (60.77%), Query Frame = 1
Query:   16 SSIQNMIISVTVAIIVVGLATMNWMVVPFVAVCLVTTLLMTLAILVLVGWRINVVESISITIAAGLSVDYVVHILHAYQDVYGDRQIRIQGSLTKMGVSVTSGVLTTVGAVFVLLFCNLTWFAKFGELVC 405
            S++ + +I V V+ +V+ +AT    +  F  V + + L+  +  + + GW + V+E+I   I AG SVDYV+H+ HAY    GD + R+  +  +MG SV SG+LT+V A   L FC LT+FAKFG  +C
Sbjct:  564 SAVSSSMIGVLVSFVVIFIATRKLHLAFFATVSIFSVLISVIGAVTIAGWTLGVIEAILFGILAGFSVDYVIHLAHAYSHAEGDVEERVMAAYAEMGTSVFSGMLTSVVASIPLFFCTLTFFAKFGTFLC 693          
BLAST of mRNA_P-wetherbeei_contig9452.1.1 vs. uniprot
Match: A0A7S4RDE7_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RDE7_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 3.240e-18
Identity = 51/130 (39.23%), Postives = 79/130 (60.77%), Query Frame = 1
Query:   16 SSIQNMIISVTVAIIVVGLATMNWMVVPFVAVCLVTTLLMTLAILVLVGWRINVVESISITIAAGLSVDYVVHILHAYQDVYGDRQIRIQGSLTKMGVSVTSGVLTTVGAVFVLLFCNLTWFAKFGELVC 405
            S++ + +I V V+ +V+ +AT    +  F  V + + L+  +  + + GW + V+E+I   I AG SVDYV+H+ HAY    GD + R+  +  +MG SV SG+LT+V A   L FC LT+FAKFG  +C
Sbjct:  896 SAVSSSMIGVLVSFVVIFIATRKLHLAFFATVSIFSVLISVIGAVTIAGWTLGVIEAILFGILAGFSVDYVIHLAHAYSHAEGDVEERVMAAYAEMGTSVFSGMLTSVVASIPLFFCTLTFFAKFGTFLC 1025          
BLAST of mRNA_P-wetherbeei_contig9452.1.1 vs. uniprot
Match: A0A7S3PW60_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PW60_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 8.230e-18
Identity = 53/130 (40.77%), Postives = 81/130 (62.31%), Query Frame = 1
Query:   16 SSIQNMIISVTVAIIVVGLATMNWMVVPFVAVCLVTTLLMTLAILVLVGWRINVVESISITIAAGLSVDYVVHILHAYQDVYGDRQIRIQGSLTKMGVSVTSGVLTTVGAVFVLLFCNLTWFAKFGELVC 405
            ++I   +I V VA IV+ ++T    +  F  +C+++ L+  +    ++GW +  +E+I I+I AG SVDYV+H+ HAY    G+   RI  +  +MGVSV SG+LT+V A   L FC LT+FAKFG  +C
Sbjct:  906 TAISGSMIGVLVAFIVLFVSTRKLHLSLFATLCILSVLVGVIGSATMLGWTLGTIEAILISILAGFSVDYVIHLAHAYNHAEGEPDERILAAYGEMGVSVFSGMLTSVVASIPLFFCTLTFFAKFGTFLC 1035          
BLAST of mRNA_P-wetherbeei_contig9452.1.1 vs. uniprot
Match: B8BTM9_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BTM9_THAPS)

HSP 1 Score: 88.2 bits (217), Expect = 1.130e-17
Identity = 53/131 (40.46%), Postives = 83/131 (63.36%), Query Frame = 1
Query:   13 ESSIQNMIISVTVAIIVVGLATMNWMVVPFVAVCLVTTLLMTLAILVLVGWRINVVESISITIAAGLSVDYVVHILHAYQDVYGDRQIRIQGSLTKMGVSVTSGVLTTVGAVFVLLFCNLTWFAKFGELVC 405
            +S+IQ+ I+ V +A +V+ L+T    +  F ++ +V  L+  +  +V++GW +  +ESI I I AG SVDYVVH+ HAY+   GD   RI  +   +G+SV +G++T+V A   L FC L +FAKFG  +C
Sbjct:  956 KSAIQSSILGVAIAFVVLLLSTHVLHLAFFASLSIVCVLVSVVGTMVMLGWYLGSIESILICIIAGFSVDYVVHLAHAYEIAKGDTYARITEAFGDLGISVFNGMITSVVASIPLFFCQLQFFAKFGTFLC 1086          
BLAST of mRNA_P-wetherbeei_contig9452.1.1 vs. uniprot
Match: A0A7S2R7I8_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2R7I8_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.290e-16
Identity = 47/118 (39.83%), Postives = 70/118 (59.32%), Query Frame = 1
Query:   37 ISVTVAIIVVGLATMNWMVVPFVAVCLVTTLLMTLAILVLVGWRINVVESISITIAAGLSVDYVVHILHAYQDVYGDRQIRIQGSLTKMGVSVTSGVLTTVGAVFVLLFCNLTWFAKF 390
            I V V+ +V+ +AT    +     V + + L+  +  + + GW + V+E+I   I AG SVDYV+H+ HAY    GD + R+  +  +MG SV SG+LT+V A   L FC LT+FAKF
Sbjct:    4 IGVLVSFVVIFIATRKLHLALLATVSIFSVLISVIGAVTIAGWTLGVIEAILFGILAGFSVDYVIHLAHAYSHAEGDVEERVMAAYAEMGTSVFSGMLTSVVASIPLFFCTLTFFAKF 121          
BLAST of mRNA_P-wetherbeei_contig9452.1.1 vs. uniprot
Match: K0RG27_THAOC (Sterol regulatory element-binding protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RG27_THAOC)

HSP 1 Score: 84.3 bits (207), Expect = 2.480e-16
Identity = 47/131 (35.88%), Postives = 83/131 (63.36%), Query Frame = 1
Query:   13 ESSIQNMIISVTVAIIVVGLATMNWMVVPFVAVCLVTTLLMTLAILVLVGWRINVVESISITIAAGLSVDYVVHILHAYQDVYGDRQIRIQGSLTKMGVSVTSGVLTTVGAVFVLLFCNLTWFAKFGELVC 405
            +++IQ+ ++ V +A +V+ ++T  + +  F ++ +   L+  +  +V++GW +  +ES  I I AG SVDYVVH+ HAY+   GD   R+  + + +G+SV +G++T+V A   L FC L +FAKFG  +C
Sbjct:  828 KTAIQSSVLGVVIAFVVLLISTRVFHLAFFASLSITAVLVSVVGTMVMLGWSLGSIESTLIGIIAGFSVDYVVHLAHAYEIASGDTYSRVTEAFSDLGISVFNGMVTSVVASIPLFFCQLQFFAKFGTFLC 958          
BLAST of mRNA_P-wetherbeei_contig9452.1.1 vs. uniprot
Match: A0A7S2BHV5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BHV5_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 4.040e-16
Identity = 48/129 (37.21%), Postives = 77/129 (59.69%), Query Frame = 1
Query:    7 LLESSIQNMIISVTVAIIVVGLATMNWMVVPFVAVCLVTTLLMTLAILVLVGWRINVVESISITIAAGLSVDYVVHILHAYQDVYGDRQIRIQGSLTKMGVSVTSGVLTTVGAVFVLLFCNLTWFAKFG 393
            L  S+ QN   S+ +A++V+ L T NW +       L     +  A + + GW++N++E++ I+IA G+SVDYV+H+ H+Y    G+   ++  +L +MGVSVTSG+LTT  A   L   ++ WF  FG
Sbjct:  301 LTTSAYQNASASLCLAVVVILLFTNNWWLTILCTFALYCVTSLVFAEMAIFGWQVNILEAVDISIAGGMSVDYVLHLAHSYNSQTGNHGEKVTKALKEMGVSVTSGMLTTFMACIALFMTDMLWFRLFG 429          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9452.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J2WE21_9STRA2.280e-2042.86Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1VBT3_9STRA3.710e-1938.17Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S0GLU2_9STRA1.230e-1838.17Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S4VPR6_9STRA3.130e-1839.23Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4RDE7_9STRA3.240e-1839.23Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
A0A7S3PW60_9STRA8.230e-1840.77Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
B8BTM9_THAPS1.130e-1740.46Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2R7I8_9STRA1.290e-1639.83Hypothetical protein (Fragment) n=1 Tax=labyrinthu... [more]
K0RG27_THAOC2.480e-1635.88Sterol regulatory element-binding protein (Fragmen... [more]
A0A7S2BHV5_9STRA4.040e-1637.21Hypothetical protein n=1 Tax=Florenciella parvula ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9452contigP-wetherbeei_contig9452:185..1192 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog35128.Thaps21161
PFAMsPatched
Model size405
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categorysignal anchor
Exons3
Evalue6.41e-16
EggNOG OGsKOG3664@1|root,KOG3664@2759|Eukaryota,2XEBF@2836|Bacillariophyta
DescriptionMMPL family
Cds size375
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187094.4867523-CDS-P-wetherbeei_contig9452:184..3761683187094.4867523-CDS-P-wetherbeei_contig9452:184..376Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9452 185..376 -
1683187094.4983184-CDS-P-wetherbeei_contig9452:792..8971683187094.4983184-CDS-P-wetherbeei_contig9452:792..897Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9452 793..897 -
1683187094.5082712-CDS-P-wetherbeei_contig9452:1084..11621683187094.5082712-CDS-P-wetherbeei_contig9452:1084..1162Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9452 1085..1162 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187094.522028-UTR-P-wetherbeei_contig9452:1162..11921683187094.522028-UTR-P-wetherbeei_contig9452:1162..1192Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9452 1163..1192 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9452.1.1prot_P-wetherbeei_contig9452.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9452 185..1162 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9452.1.1

>prot_P-wetherbeei_contig9452.1.1 ID=prot_P-wetherbeei_contig9452.1.1|Name=mRNA_P-wetherbeei_contig9452.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=125bp
MIISVTVAIIVVGLATMNWMVVPFVAVCLVTTLLMTLAILVLVGWRINVV
ESISITIAAGLSVDYVVHILHAYQDVYGDRQIRIQGSLTKMGVSVTSGVL
TTVGAVFVLLFCNLTWFAKFGELVC
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mRNA from alignment at P-wetherbeei_contig9452:185..1192-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9452.1.1 ID=mRNA_P-wetherbeei_contig9452.1.1|Name=mRNA_P-wetherbeei_contig9452.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1008bp|location=Sequence derived from alignment at P-wetherbeei_contig9452:185..1192- (Phaeothamnion wetherbeei SAG_119_79)
CAAACGCTCCTCGAGTCTTCGATCCAGAACATGATCATCTCCGTCACCGT CGCCATCATCGTCGTCGGCCTCGCCACCATGAATTGGATGGTCGTGCCCT TCGTCGCGGTGAGCAAATTAAACCGCGCGGCACTGCGGCGGTTTTTTGAA GGGAAAGGCGGCGGGCGGGCGATTAGGGGATAACAGCGGTGAAAGTCTTC CCTGTGCTCTGGCGAGTTCCTTTGGCTTCGCCCTAGAAACTTAACCCCCT CCTCCTTCCTCCCGTCTTTTGCGCCTGATGTTCTGCTGCCTGCAGGTATG CTTGGTGACGACACTGCTGATGACGCTGGCCATCCTAGTCCTGGTCGGCT GGAGGATCAATGTGGTCGAGTCGATCTCCATCACCATTGCCGCCGGCCTC GTGAGTTTGATAGAATTCGCCAAGCTGCAAGCAGGGGCCTCTTGGTGGCT CGCTCTTTGCCATTTGAATGGCGGCTGTCGTCGTGTCCTCTTAAAGTACA GCTACGGTTGTCAGTCACGTGACCGTGCCGGAGGCTGAATGACGGATACC GGTTGAGTCTTGGCATTTGTCTAGGGGGAGCTTCTTATACCGCATAGAAC TCAATGGAAATCTGGCTTAAGGTTTCTTATTCTGTGCACTCCGATGGCCT CGCCTCACCTCAACCGATTTTTGCCCCGTCACCGCTTTCGCCCCTGCTGT CGTCTGTGCTGCCATTCCTGCCGCTGCTGCCATCACCCATCACCATTGTG TGCCGCCGTCGCCGTCCGTTACGTCCTCCCGTTGGCCGGCAATGTACAAA CTTCCATCAACCGCAGTCGGTGGATTATGTGGTGCACATTCTGCACGCGT ACCAGGACGTCTATGGCGACCGCCAGATACGCATCCAGGGATCGCTCACG AAGATGGGGGTTTCCGTCACCTCGGGCGTGTTGACCACCGTTGGTGCCGT ATTTGTGCTTCTATTCTGCAACCTGACCTGGTTCGCAAAATTCGGTGAGC TTGTTTGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9452:185..1192-

>mRNA_P-wetherbeei_contig9452.1.1 ID=mRNA_P-wetherbeei_contig9452.1.1|Name=mRNA_P-wetherbeei_contig9452.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=375bp|location=Sequence derived from alignment at P-wetherbeei_contig9452:185..1192- (Phaeothamnion wetherbeei SAG_119_79)
ATGATCATCTCCGTCACCGTCGCCATCATCGTCGTCGGCCTCGCCACCAT
GAATTGGATGGTCGTGCCCTTCGTCGCGGTATGCTTGGTGACGACACTGC
TGATGACGCTGGCCATCCTAGTCCTGGTCGGCTGGAGGATCAATGTGGTC
GAGTCGATCTCCATCACCATTGCCGCCGGCCTCTCGGTGGATTATGTGGT
GCACATTCTGCACGCGTACCAGGACGTCTATGGCGACCGCCAGATACGCA
TCCAGGGATCGCTCACGAAGATGGGGGTTTCCGTCACCTCGGGCGTGTTG
ACCACCGTTGGTGCCGTATTTGTGCTTCTATTCTGCAACCTGACCTGGTT
CGCAAAATTCGGTGAGCTTGTTTGC
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