mRNA_P-wetherbeei_contig9425.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9425.2.1
Unique NamemRNA_P-wetherbeei_contig9425.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig9425.2.1 vs. uniprot
Match: A0A7S1UFV6_9STRA (Hypothetical protein n=2 Tax=Ochrophyta TaxID=2696291 RepID=A0A7S1UFV6_9STRA)

HSP 1 Score: 204 bits (520), Expect = 7.370e-63
Identity = 104/106 (98.11%), Postives = 106/106 (100.00%), Query Frame = 2 
Query:    2 KQLEDGRSLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRSLSDYNIQKESTLHLVLRLRGGR 319
            KQLEDGR+LSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGR+LSDYNIQKESTLHLVLRLRGGR
Sbjct:   12 KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGR 117
[Close]
BLAST of mRNA_P-wetherbeei_contig9425.2.1 vs. uniprot
Match: A0A485KBK1_9STRA (Aste57867_3872 protein n=9 Tax=Oomycota TaxID=4762 RepID=A0A485KBK1_9STRA)

HSP 1 Score: 202 bits (514), Expect = 1.910e-61
Identity = 103/105 (98.10%), Postives = 105/105 (100.00%), Query Frame = 2 
Query:    2 KQLEDGRSLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRSLSDYNIQKESTLHLVLRLRGG 316
            KQLEDGR+LSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSD+IDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRSLSDYNIQKESTLHLVLRLRGG
Sbjct:   48 KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRSLSDYNIQKESTLHLVLRLRGG 152
[Close]
BLAST of mRNA_P-wetherbeei_contig9425.2.1 vs. uniprot
Match: A0A8C3GUR2_9CORV (Uncharacterized protein n=1 Tax=Corvus moneduloides TaxID=1196302 RepID=A0A8C3GUR2_9CORV)

HSP 1 Score: 203 bits (516), Expect = 3.620e-61
Identity = 103/113 (91.15%), Postives = 108/113 (95.58%), Query Frame = 2 
Query:    2 KQLEDGRSLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRSLSDYNIQKESTLHLVLRLRGGR*TLYGTW 340
            KQLEDGR+LSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL+VEPSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGR+LSDYNIQKESTLHLVLRLRGG+  L G W
Sbjct:   48 KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGKFPLKGLW 160
[Close]
BLAST of mRNA_P-wetherbeei_contig9425.2.1 vs. uniprot
Match: A0A6U3U954_9STRA (Hypothetical protein n=3 Tax=Mediophyceae TaxID=589449 RepID=A0A6U3U954_9STRA)

HSP 1 Score: 200 bits (509), Expect = 4.490e-61
Identity = 102/105 (97.14%), Postives = 104/105 (99.05%), Query Frame = 2 
Query:    2 KQLEDGRSLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRSLSDYNIQKESTLHLVLRLRGG 316
            KQLEDGR+LSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGR+LSDYNIQKESTLHLVLRLRGG
Sbjct:    6 KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 110
[Close]
BLAST of mRNA_P-wetherbeei_contig9425.2.1 vs. uniprot
Match: F0YA14_AURAN (Ubiquitin n=2 Tax=Sar TaxID=2698737 RepID=F0YA14_AURAN)

HSP 1 Score: 201 bits (511), Expect = 5.410e-61
Identity = 102/105 (97.14%), Postives = 105/105 (100.00%), Query Frame = 2 
Query:    2 KQLEDGRSLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRSLSDYNIQKESTLHLVLRLRGG 316
            KQLEDGR+LSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSD+IDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGR+LSDYNIQKESTLHLVLRLRGG
Sbjct:   48 KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152
[Close]
BLAST of mRNA_P-wetherbeei_contig9425.2.1 vs. uniprot
Match: A0A7S1UDB6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UDB6_9STRA)

HSP 1 Score: 202 bits (515), Expect = 1.030e-60
Identity = 103/105 (98.10%), Postives = 105/105 (100.00%), Query Frame = 2 
Query:    2 KQLEDGRSLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRSLSDYNIQKESTLHLVLRLRGG 316
            KQLEDGR+LSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGR+LSDYNIQKESTLHLVLRLRGG
Sbjct:   32 KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 136
[Close]
BLAST of mRNA_P-wetherbeei_contig9425.2.1 vs. uniprot
Match: A0A1Z5JIV5_FISSO (Ubiquitin C n=4 Tax=Sar TaxID=2698737 RepID=A0A1Z5JIV5_FISSO)

HSP 1 Score: 200 bits (509), Expect = 1.080e-60
Identity = 102/105 (97.14%), Postives = 104/105 (99.05%), Query Frame = 2 
Query:    2 KQLEDGRSLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRSLSDYNIQKESTLHLVLRLRGG 316
            KQLEDGR+LSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGR+LSDYNIQKESTLHLVLRLRGG
Sbjct:   48 KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152
[Close]
BLAST of mRNA_P-wetherbeei_contig9425.2.1 vs. uniprot
Match: A0A1Y1XLM2_9FUNG (Ubiquitin n=2 Tax=Zoopagomycota TaxID=1913638 RepID=A0A1Y1XLM2_9FUNG)

HSP 1 Score: 200 bits (508), Expect = 1.530e-60
Identity = 102/106 (96.23%), Postives = 105/106 (99.06%), Query Frame = 2 
Query:    2 KQLEDGRSLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRSLSDYNIQKESTLHLVLRLRGGR 319
            KQLEDGR+LSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL+VE SDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGR+LSDYNIQKESTLHLVLRLRGGR
Sbjct:   48 KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGR 153
[Close]
BLAST of mRNA_P-wetherbeei_contig9425.2.1 vs. uniprot
Match: A0A2R5GBF3_9STRA (Polyubiquitin n=9 Tax=Eukaryota TaxID=2759 RepID=A0A2R5GBF3_9STRA)

HSP 1 Score: 201 bits (511), Expect = 2.180e-60
Identity = 102/105 (97.14%), Postives = 105/105 (100.00%), Query Frame = 2 
Query:    2 KQLEDGRSLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRSLSDYNIQKESTLHLVLRLRGG 316
            KQLEDGR+LSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTI+NVKQKIQDKEGIPPDQQRLIFAGKQLEDGR+LSDYNIQKESTLHLVLRLRGG
Sbjct:   48 KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152
[Close]
BLAST of mRNA_P-wetherbeei_contig9425.2.1 vs. uniprot
Match: A0A1D3D128_9EIME (Uncharacterized protein n=2 Tax=Alveolata TaxID=33630 RepID=A0A1D3D128_9EIME)

HSP 1 Score: 199 bits (506), Expect = 3.060e-60
Identity = 101/106 (95.28%), Postives = 105/106 (99.06%), Query Frame = 2 
Query:    2 KQLEDGRSLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRSLSDYNIQKESTLHLVLRLRGGR 319
            KQLEDGR+LSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGR+LSDYNIQKESTLHLVLRLRGG+
Sbjct:   48 KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGQ 153
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9425.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1UFV6_9STRA7.370e-6398.11Hypothetical protein n=2 Tax=Ochrophyta TaxID=2696... [more]
A0A485KBK1_9STRA1.910e-6198.10Aste57867_3872 protein n=9 Tax=Oomycota TaxID=4762... [more]
A0A8C3GUR2_9CORV3.620e-6191.15Uncharacterized protein n=1 Tax=Corvus moneduloide... [more]
A0A6U3U954_9STRA4.490e-6197.14Hypothetical protein n=3 Tax=Mediophyceae TaxID=58... [more]
F0YA14_AURAN5.410e-6197.14Ubiquitin n=2 Tax=Sar TaxID=2698737 RepID=F0YA14_A... [more]
A0A7S1UDB6_9STRA1.030e-6098.10Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A1Z5JIV5_FISSO1.080e-6097.14Ubiquitin C n=4 Tax=Sar TaxID=2698737 RepID=A0A1Z5... [more]
A0A1Y1XLM2_9FUNG1.530e-6096.23Ubiquitin n=2 Tax=Zoopagomycota TaxID=1913638 RepI... [more]
A0A2R5GBF3_9STRA2.180e-6097.14Polyubiquitin n=9 Tax=Eukaryota TaxID=2759 RepID=A... [more]
A0A1D3D128_9EIME3.060e-6095.28Uncharacterized protein n=2 Tax=Alveolata TaxID=33... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9425contigP-wetherbeei_contig9425:1004..2351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog40148.OGLUM03G11200.1
Model size1028
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.6e-20
EggNOG OGs2ETIW@1|root,2SVVR@2759|Eukaryota
Cds size390
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187093.254582-CDS-P-wetherbeei_contig9425:1003..11941683187093.254582-CDS-P-wetherbeei_contig9425:1003..1194Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9425 1004..1194 +
1683187093.2720485-CDS-P-wetherbeei_contig9425:1516..17151683187093.2720485-CDS-P-wetherbeei_contig9425:1516..1715Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9425 1517..1715 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187093.2806704-UTR-P-wetherbeei_contig9425:1715..23511683187093.2806704-UTR-P-wetherbeei_contig9425:1715..2351Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9425 1716..2351 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9425.2.1prot_P-wetherbeei_contig9425.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9425 1004..1715 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9425.2.1

>prot_P-wetherbeei_contig9425.2.1 ID=prot_P-wetherbeei_contig9425.2.1|Name=mRNA_P-wetherbeei_contig9425.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
QAAGGRPLAVGLQHPEGVDATPGPAPPRRHANLREDADGQDDHARCRALG
YHRQRQAEDPGQGGYPARPAAPNLRGQAAGGRPLAVGLQHPEGVHAPPGA
APARGPLNALWDVAAICALRCREWRQNGA*
back to top

mRNA from alignment at P-wetherbeei_contig9425:1004..2351+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9425.2.1 ID=mRNA_P-wetherbeei_contig9425.2.1|Name=mRNA_P-wetherbeei_contig9425.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1348bp|location=Sequence derived from alignment at P-wetherbeei_contig9425:1004..2351+ (Phaeothamnion wetherbeei SAG_119_79)
CAAGCAGCTGGAGGACGGCCGCTCGCTGTCGGACTACAACATCCAGAAGG
AGTCGACGCTACACCTGGTCCTGCGCCTCCGCGGCGGCATGCAAATCTTC
GTGAAGACGCTGACGGGCAAGACGATCACGCTCGATGTCGAGCCCTCGGA
TACCATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGTGAGTTGG
TTCGATACGAGCAGTCTTACTGATGCGGCCGGAACGGACGCCCGCCCCAT
GCTTTCGGTTTTTGGGGCTTGTTATGGCAGTTCGTTTCACTTGATGTTTC
ATGGACGTGGGGAGAGTCTTTGCCTGAGTTGTGTGAAGGAGTGGGACGGA
ATTTCTGCCTCGTTCGGTTGTTCCAGCCCTGATGAGTTTGGGAGACTAAA
GTCTTCCTTCAAAAATCTGCGACAGCTCTCTCAGAGCTTAACCGTTGCCT
TCTTCGTTCTTTGCCCAACTTTTCGTTGGCCGCTCTTCCTCCTTCTTTCC
TCTATCTGTGCAGGTATCCCGCCCGACCAGCAGCGCCTAATCTTCGCGGG
CAAGCAGCTGGAGGACGGCCGCTCGCTGTCGGACTACAACATCCAGAAGG
AGTCCACGCTCCACCTGGTGCTGCGCCTGCGCGGGGGCCGCTAAACGCTT
TATGGGACGTGGCTGCGATTTGCGCGCTGCGCTGCCGCGAATGGAGACAG
AATGGCGCTTAATGTTGGGTGGTAATACATGACAACAGTTGTGTGGTTTT
CCTGAAGTGATTGAGATTGTTGAACCGCAGCATTGATGTCGGGTTGAGGG
GCGTCGCAAGGGAACGGAAGACTCTTCCCTCGCTGTAACCCGCTCCAAGT
CACAATCGGCAGAGATACGTGTTTTGGAAGGAAAAGAAACGGATCAGCAA
AAGGCATGACGTTTCCCCGAAAGCGTGTACCCATATATTTTAAGATCAGG
AGCGGCGACCCGCAAGGGGACTCATGAAGAGCAGGGCGGGTAACGACGTC
AGCATCAGCATTGGCAAAGGCAGTTGCATGTGAAACGCAGGGCAGCGACA
AAAGGGCGATAAGCGGTCATTGCAGGTGAAGTGAAAGCAAAGGCCGATCC
ACCCTTCCTCGGCTGGTAGGGGCCTTGACTTACCTGGCAACAGATTGATA
CAGAAGGCAAGCTTTTCTGGTTGAGCCCGTGATGCCATCAGTCCTTCGGT
AGCGAAAACGGACATAGCGCCCACAAGTCCACGACAGCCATAGAATCGCC
GCTGGTGTTTGGTCCTCATGACAGAAGATAAGAAAGAAGCAAAAATTGTA
AAAAGACGGTGCCTCCGGTGGCCCGCATCCAGCACTCTCCGGTGGCCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig9425:1004..2351+

>mRNA_P-wetherbeei_contig9425.2.1 ID=mRNA_P-wetherbeei_contig9425.2.1|Name=mRNA_P-wetherbeei_contig9425.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig9425:1004..2351+ (Phaeothamnion wetherbeei SAG_119_79)
CAAGCAGCTGGAGGACGGCCGCTCGCTGTCGGACTACAACATCCAGAAGG
AGTCGACGCTACACCTGGTCCTGCGCCTCCGCGGCGGCATGCAAATCTTC
GTGAAGACGCTGACGGGCAAGACGATCACGCTCGATGTCGAGCCCTCGGA
TACCATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGTATCCCGC
CCGACCAGCAGCGCCTAATCTTCGCGGGCAAGCAGCTGGAGGACGGCCGC
TCGCTGTCGGACTACAACATCCAGAAGGAGTCCACGCTCCACCTGGTGCT
GCGCCTGCGCGGGGGCCGCTAAACGCTTTATGGGACGTGGCTGCGATTTG
CGCGCTGCGCTGCCGCGAATGGAGACAGAATGGCGCTTAA
back to top