mRNA_P-wetherbeei_contig940.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig940.4.1
Unique NamemRNA_P-wetherbeei_contig940.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig940.4.1 vs. uniprot
Match: A0A7X9KIR9_9ACTN (Uncharacterized protein n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A7X9KIR9_9ACTN)

HSP 1 Score: 196 bits (499), Expect = 5.390e-61
Identity = 94/173 (54.34%), Postives = 127/173 (73.41%), Query Frame = 1
Query:   28 WVKVLLAVICAGIAAMWVYAFVFAGKDGVYRVKNDQWRSAAQTICAEAQDRRLGLANTEGGYIANPTVEQMRERADIVDQATDILERMLDDVVALPLTTDHDQHAVDVWQQYFRILIEDRRAYTARLRAGDLAPYRESVVEGGPVTNVITDFTSG---NNVKDCAPPGELNGD 537
            WVK +L + CA +A+MW+Y F FA  +GVY++++  WR AA+ +C+ A   R  L +T  GYIANPT EQM +RADIVD+ATDILERMLDD+VA+P+  + D   V+ + + +RI++ DRR YTA LR  +L PY E+VV GGPVTNV+ DFT+G   N+V +C+PPGEL GD
Sbjct:   17 WVKAVLVLCCAVVASMWIYYFFFATDEGVYQLQDKSWRVAAEQVCSAASAEREALTDTSDGYIANPTDEQMVQRADIVDKATDILERMLDDLVAIPVDNEDDATRVEFFAENYRIVLADRRRYTASLRRFELVPYSETVVGGGPVTNVVLDFTAGVKGNDVPECSPPGELGGD 189          
BLAST of mRNA_P-wetherbeei_contig940.4.1 vs. uniprot
Match: A0A6I3EY63_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6I3EY63_9ACTN)

HSP 1 Score: 192 bits (489), Expect = 1.830e-59
Identity = 93/181 (51.38%), Postives = 127/181 (70.17%), Query Frame = 1
Query:    4 PEIAPARRWVKVLLAVICAGIAAMWVYAFVFAGKDGVYRVKNDQWRSAAQTICAEAQDRRLGLANTEGGYIANPTVEQMRERADIVDQATDILERMLDDVVALPLTTDHDQHAVDVWQQYFRILIEDRRAYTARLRAGDLAPYRESVVEGGPVTNVITDFTSG---NNVKDCAPPGELNGD 537
            P   P R WVK++L   C  +AAMWV+ F FA   GVY++++  WR  A  +CA    RR  L +T GGYIA+PT EQM +RADIVD ATD+L++M+ D+VA+P+  D+D+  + V++  +RI+I+DRR YTA LR   LAPY E+VV GGPV+NV+ DFT+G   N++  C+PPGEL GD
Sbjct:   10 PAPTPVRLWVKLILGACCLAVAAMWVFYFFFATDKGVYQIEDASWRPQALQVCAAVDTRRSALEDTTGGYIAHPTHEQMLQRADIVDTATDMLDQMITDLVAIPVNNDNDRARLQVFEDNYRIIIKDRRRYTAALREFKLAPYTETVVGGGPVSNVVLDFTAGVKGNDLPLCSPPGELGGD 190          
BLAST of mRNA_P-wetherbeei_contig940.4.1 vs. uniprot
Match: A0A539DVK4_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539DVK4_9ACTN)

HSP 1 Score: 176 bits (445), Expect = 8.900e-53
Identity = 90/170 (52.94%), Postives = 116/170 (68.24%), Query Frame = 1
Query:   28 WVKVLLAVICAGIAAMWVYAFVFAGKDGVYRVKNDQWRSAAQTICAEAQDRRLGLANTEGGYIANPTVEQMRERADIVDQATDILERMLDDVVALPLTTDHDQHAVDVWQQYFRILIEDRRAYTARLRAGDLAPYRESVVEGGPVTNVITDFTSGNNVKDCAPPGELNGD 537
            +VKVLL +I   + AMWVYAF FA +   YR+ +  WR+ AQ ICA  + +RL L +T  GYIA+PT  QM ERADIV+ ATDIL+  L +V A+   ++ DQ  +  ++ Y+  LI DRR Y  +LR+ DL PY ES V+GGPVTNVITDFT  N ++ CAPPGEL GD
Sbjct:   24 FVKVLLGLIILALVAMWVYAFGFAPRKAAYRIDDGAWRARAQEICARYEAQRLELVDTSAGYIADPTDAQMIERADIVEAATDILQASLAEVSAVLPASERDQSLLAQYRSYYDTLIADRRLYVEQLRSLDLQPYTESAVDGGPVTNVITDFTIINEMRACAPPGELGGD 193          
BLAST of mRNA_P-wetherbeei_contig940.4.1 vs. uniprot
Match: A0A7K1B1Z6_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A7K1B1Z6_9ACTN)

HSP 1 Score: 174 bits (440), Expect = 7.590e-52
Identity = 88/178 (49.44%), Postives = 122/178 (68.54%), Query Frame = 1
Query:    1 QPEIAPARRWVKVLLAVICAGIAAMWVYAFVFAGKDGVYRVKNDQWRSAAQTICAEAQDRRLGLANTEGGYIANPTVEQMRERADIVDQATDILERMLDDVVALPLTTDHDQHAVDVWQQYFRILIEDRRAYTARLRAGDLAPYRESVVEGGPVTNVITDFTSGNNVKDCAPPGELNG 534
            +P+ + A   V+ +LAV+   I AMWVYAF FA + G+Y V+++ W   AQ IC   + RRL L + + GYI +PT EQM +RADIVDQATD+L+  LD+V  +   +  DQ  V  ++++F +LI DRRAYT RLR  +L PY E+ ++GGPVTN++ DFT+ N +K CAPPGEL G
Sbjct:   28 RPKRSTATIAVRSVLAVVVLLIVAMWVYAFGFAERQGLYVVEDEAWSERAQGICEVYEQRRLELTDVDEGYIPDPTNEQMLQRADIVDQATDLLQAELDEVFEVLPASARDQELVLEYRRWFEVLISDRRAYTERLRNLELGPYLETKIDGGPVTNLLVDFTTANRMKRCAPPGELGG 205          
BLAST of mRNA_P-wetherbeei_contig940.4.1 vs. uniprot
Match: A0A3C2B317_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2B317_9ACTN)

HSP 1 Score: 165 bits (418), Expect = 1.440e-48
Identity = 84/181 (46.41%), Postives = 121/181 (66.85%), Query Frame = 1
Query:    1 QPEIAPARRWVKVLLAVICAGIAAMWVYAFVFAGKDGVYRVKNDQWRSAAQTICAEAQDRRLGLANTEGGYIANPTVEQMRERADIVDQATDILERMLDDVVALPLTTDHDQHAVDVWQQYFRILIEDRRAYTARLRAGDLAPYRESVVE--GGPVTNVITDFTSG---NNVKDCAPPGEL 528
            Q E    R WVK++L + C  +AAMW+Y  + A   GVY++ +D W   A  +CA A+     L  TEGG+I  PTVEQM ERA IV +ATD+LE+M+DDV+A+P+  D D+  + V+++++R++I DRR Y   +  G+   Y E+VV+  GGPVTNVITDFT+G   N+V +C+PP +L
Sbjct:   16 QDERPAGRWWVKLILLLGCLLMAAMWLYYLLLAPDKGVYQLDDDTWAPQAAAVCAAAKAEMRALETTEGGFIEEPTVEQMAERARIVGEATDVLEQMVDDVMAIPVDNDRDRAILAVFEEHYRMVIADRRRYENSMANGENVRYTETVVKEAGGPVTNVITDFTAGVKGNDVPECSPPNDL 196          
BLAST of mRNA_P-wetherbeei_contig940.4.1 vs. uniprot
Match: A0A4R7I139_9ACTN (Uncharacterized protein n=1 Tax=Ilumatobacter fluminis TaxID=467091 RepID=A0A4R7I139_9ACTN)

HSP 1 Score: 125 bits (314), Expect = 4.460e-33
Identity = 68/169 (40.24%), Postives = 102/169 (60.36%), Query Frame = 1
Query:   28 WVKVLLAVICAGIAAMWVYAFVFAGKDGVYRVKNDQWRSAAQTICAEAQDRRLGLANTEGGYIANPTVEQMRERADIVDQATDILERMLDDVVALPLTTDHDQHAVDVWQQYFRILIEDRRAYTARLR-AGDLAPYRESVVEGGPVTNVITDFTSGNNVKDCAPPGELN 531
            W++  L VI A  AA W++A  FA K+ V R+ +  W   A+ IC EA + R+ LA+      A P  E +  RA+IVD++TDILE+MLDDVVA+  T +  Q  V +W++ +RI ++DRRAY   LR  G+ + + ES V+  P++  +  F   N +  CAPP +L+
Sbjct:   20 WLRGFLLVILALFAAFWIWALFFASKEAVNRIDDRAWAERAEAICLEATEERIQLADLTRIDQAGP--ELIYRRAEIVDESTDILEQMLDDVVAVEPTDEKGQGIVPLWEEEYRIYLDDRRAYADTLRETGENSAFYESAVDELPISERLATFAGDNEMSTCAPPIDLS 186          
BLAST of mRNA_P-wetherbeei_contig940.4.1 vs. uniprot
Match: A0A7K0YT42_9ACTN (Uncharacterized protein n=3 Tax=root TaxID=1 RepID=A0A7K0YT42_9ACTN)

HSP 1 Score: 124 bits (311), Expect = 8.760e-33
Identity = 69/170 (40.59%), Postives = 95/170 (55.88%), Query Frame = 1
Query:   22 RRWVKVLLAVICAGIAAMWVYAFVFA-GKDGVYRVKNDQWRSAAQTICAEAQDRRLGLANTEGGYIANPTVEQMRERADIVDQATDILERMLDDVVALPLTTDHDQHAVDVWQQYFRILIEDRRAYTARLRAGDLAPYRESVVEGGPVTNVITDFTSGNNVKDCAPPGEL 528
            R+ VK+LL +I  GIA  WV+A  F   +D V  V +  W   A  +C EA  +R  L +        P    + ERADI+D+AT I+++MLDDV +  L +  DQ  VD W+  F+  I  R AYTA LR G+ AP+ ES+VEG P + +I  F   N +K C  P +L
Sbjct:    5 RQPVKILLTIISLGIAVFWVWALFFPPSRDNVAAVDDTSWSIRANALCQEANLQRDTLVDLRRINTVGPNA--LSERADIIDEATAIIQKMLDDVTSQQLASPQDQKRVDTWRDIFQDWINGRIAYTAILRTGENAPFAESMVEGSPASTLIDYFAQANRMKSCGAPKDL 172          
BLAST of mRNA_P-wetherbeei_contig940.4.1 vs. uniprot
Match: A0A7W1CPD9_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1CPD9_9ACTN)

HSP 1 Score: 124 bits (310), Expect = 1.780e-32
Identity = 71/175 (40.57%), Postives = 103/175 (58.86%), Query Frame = 1
Query:   13 APAR--RWVKVLLAVICAGIAAMWVYAFVFAGKDGVYRVKNDQWRSAAQTICAEAQDRRLGLANTEGGYIANPTVEQMRERADIVDQATDILERMLDDVVALPLTTDHDQHAVDVWQQYFRILIEDRRAYTARLRAGDLAPYRESVVEGGPVTNVITDFTSGNNVKDCAPPGELN 531
            APAR  RW  VL+ V+    AA W++A  FA K+ V R+ + QW + A+ ICAEA+  RL LA+       +P +  + ER D++D+ATDI+E+MLDDVVA+       Q  V  W+  +R  + DRR +   LRAG   P+RE+ +EG P+   I  F   N +  C+PP +L+
Sbjct:   15 APARPSRWRYVLVPVVLL-FAAFWIWALFFASKEAVNRIDDRQWAARAEGICAEAETARLELADYRRVDGDDPAM--LAERGDVIDRATDIVEQMLDDVVAVAPGDAKGQAIVPRWEADYRTYLADRRRFADDLRAGRDEPFRETALEGIPIGEKIATFAGDNEMPSCSPPDDLS 186          
BLAST of mRNA_P-wetherbeei_contig940.4.1 vs. uniprot
Match: A0A6I3N1A9_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6I3N1A9_9ACTN)

HSP 1 Score: 123 bits (308), Expect = 2.280e-32
Identity = 63/170 (37.06%), Postives = 98/170 (57.65%), Query Frame = 1
Query:   22 RRWVKVLLAVICAGIAAMWVYAFVFAGKDGVYRVKNDQWRSAAQTICAEAQDRRLGLANTEGGYIANPTVEQMRERADIVDQATDILERMLDDVVALPLTTDHDQHAVDVWQQYFRILIEDRRAYTARLRAGDLAPYRESVVEGGPVTNVITDFTSGNNVKDCAPPGELN 531
            RR  K +L VIC  I  MW+YA  FA K  + ++ +  W+ AA+ IC  ++  R+ L +     + +     + ERA I+D+ATD LER ++ + AL ++    Q  V +W Q +R  I DRR YT +LR+G   P+ E+V+EG P++  I  F + N +  CAPP +L+
Sbjct:    3 RRIYKPMLIVICLLIGVMWIYALFFASKVSINKIGDSSWKIAAEKICLVSEKERMALIDLR--KVKDSGANALSERAQIIDKATDSLERAVNALAALTISDAKGQALVPLWLQDYRTHISDRRGYTEKLRSGVNKPFSETVIEGLPISEKIATFAADNAISSCAPPIDLS 170          
BLAST of mRNA_P-wetherbeei_contig940.4.1 vs. uniprot
Match: A0A094PC34_9ACTN (Uncharacterized protein n=1 Tax=actinobacterium acAcidi TaxID=1504320 RepID=A0A094PC34_9ACTN)

HSP 1 Score: 123 bits (308), Expect = 2.930e-32
Identity = 69/170 (40.59%), Postives = 101/170 (59.41%), Query Frame = 1
Query:   19 ARRWVKVLLAVICAGIAAMWVYAFVFAGKDGVYRVKNDQWRSAAQTICAEAQDRRLGLANTEGGYIANPTVEQMRERADIVDQATDILERMLDDVVALPLTTDHDQHAVDVWQQYFRILIEDRRAYTARLRAGDLAPYRESVVEGGPVTNVITDFTSGNNVKDCAPPGEL 528
            ARR ++V L  IC  IA  WVYAF+FA K+GV  +++  W   A+ IC  A   R  L +     I +   + + ERADI+D+AT I+++MLDDV A   T   D   ++ W+  +   I+ R  YTA+LR G  AP+ ES++EG P ++ I DFT+ N +K C+ P +L
Sbjct:   11 ARRMLQVFLGSICLIIAIFWVYAFLFASKEGVNVLEDKAWTVRAEEICRNANLERDKLVDLR--RINSVEGDALAERADIIDKATVIIQKMLDDVTAEVPTGVDDARLMEKWRSIYLSWIDARVKYTAKLRTGVNAPFAESMLEGSPESDSINDFTTNNRMKSCSSPMDL 178          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig940.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X9KIR9_9ACTN5.390e-6154.34Uncharacterized protein n=2 Tax=Actinobacteria Tax... [more]
A0A6I3EY63_9ACTN1.830e-5951.38Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A539DVK4_9ACTN8.900e-5352.94Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A7K1B1Z6_9ACTN7.590e-5249.44Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A3C2B317_9ACTN1.440e-4846.41Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A4R7I139_9ACTN4.460e-3340.24Uncharacterized protein n=1 Tax=Ilumatobacter flum... [more]
A0A7K0YT42_9ACTN8.760e-3340.59Uncharacterized protein n=3 Tax=root TaxID=1 RepID... [more]
A0A7W1CPD9_9ACTN1.780e-3240.57Uncharacterized protein n=1 Tax=Acidimicrobiia bac... [more]
A0A6I3N1A9_9ACTN2.280e-3237.06Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A094PC34_9ACTN2.930e-3240.59Uncharacterized protein n=1 Tax=actinobacterium ac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig940contigP-wetherbeei_contig940:3844..4386 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size543
Hectar predicted targeting categorysignal peptide
Exons1
Cds size543
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187092.0245497-CDS-P-wetherbeei_contig940:3843..43861683187092.0245497-CDS-P-wetherbeei_contig940:3843..4386Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig940 3844..4386 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig940.4.1prot_P-wetherbeei_contig940.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig940 3844..4386 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig940.4.1

>prot_P-wetherbeei_contig940.4.1 ID=prot_P-wetherbeei_contig940.4.1|Name=mRNA_P-wetherbeei_contig940.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=181bp
QPEIAPARRWVKVLLAVICAGIAAMWVYAFVFAGKDGVYRVKNDQWRSAA
QTICAEAQDRRLGLANTEGGYIANPTVEQMRERADIVDQATDILERMLDD
VVALPLTTDHDQHAVDVWQQYFRILIEDRRAYTARLRAGDLAPYRESVVE
GGPVTNVITDFTSGNNVKDCAPPGELNGDA*
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mRNA from alignment at P-wetherbeei_contig940:3844..4386+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig940.4.1 ID=mRNA_P-wetherbeei_contig940.4.1|Name=mRNA_P-wetherbeei_contig940.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=543bp|location=Sequence derived from alignment at P-wetherbeei_contig940:3844..4386+ (Phaeothamnion wetherbeei SAG_119_79)
CAGCCGGAGATCGCACCGGCCCGACGCTGGGTGAAGGTGCTCCTCGCGGT CATCTGCGCCGGCATCGCCGCGATGTGGGTGTACGCGTTCGTGTTCGCCG GCAAGGACGGCGTCTACCGGGTGAAGAACGACCAGTGGCGCTCCGCCGCG CAGACGATCTGCGCGGAGGCGCAGGACCGCCGCCTCGGGCTGGCCAACAC CGAGGGCGGGTACATCGCCAACCCGACCGTCGAGCAGATGCGCGAACGCG CCGACATCGTCGACCAGGCCACCGACATCCTCGAGCGGATGCTCGACGAC GTCGTCGCCCTGCCACTGACCACCGATCACGACCAGCACGCGGTCGACGT CTGGCAGCAGTACTTCCGCATCCTGATCGAGGACCGTCGGGCGTACACCG CACGGCTCCGTGCCGGTGATCTCGCCCCGTACCGCGAGTCGGTCGTCGAG GGTGGTCCGGTGACCAACGTGATCACCGACTTCACCAGCGGCAACAACGT CAAGGACTGCGCCCCGCCCGGCGAGCTCAACGGCGACGCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig940:3844..4386+

>mRNA_P-wetherbeei_contig940.4.1 ID=mRNA_P-wetherbeei_contig940.4.1|Name=mRNA_P-wetherbeei_contig940.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=543bp|location=Sequence derived from alignment at P-wetherbeei_contig940:3844..4386+ (Phaeothamnion wetherbeei SAG_119_79)
CAGCCGGAGATCGCACCGGCCCGACGCTGGGTGAAGGTGCTCCTCGCGGT
CATCTGCGCCGGCATCGCCGCGATGTGGGTGTACGCGTTCGTGTTCGCCG
GCAAGGACGGCGTCTACCGGGTGAAGAACGACCAGTGGCGCTCCGCCGCG
CAGACGATCTGCGCGGAGGCGCAGGACCGCCGCCTCGGGCTGGCCAACAC
CGAGGGCGGGTACATCGCCAACCCGACCGTCGAGCAGATGCGCGAACGCG
CCGACATCGTCGACCAGGCCACCGACATCCTCGAGCGGATGCTCGACGAC
GTCGTCGCCCTGCCACTGACCACCGATCACGACCAGCACGCGGTCGACGT
CTGGCAGCAGTACTTCCGCATCCTGATCGAGGACCGTCGGGCGTACACCG
CACGGCTCCGTGCCGGTGATCTCGCCCCGTACCGCGAGTCGGTCGTCGAG
GGTGGTCCGGTGACCAACGTGATCACCGACTTCACCAGCGGCAACAACGT
CAAGGACTGCGCCCCGCCCGGCGAGCTCAACGGCGACGCCTGA
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