mRNA_P-wetherbeei_contig9376.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9376.1.1
Unique NamemRNA_P-wetherbeei_contig9376.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9376.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9376contigP-wetherbeei_contig9376:1533..2088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size273
Hectar predicted targeting categorysignal peptide
Exons2
Cds size174
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187090.5350373-UTR-P-wetherbeei_contig9376:1532..16291683187090.5350373-UTR-P-wetherbeei_contig9376:1532..1629Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9376 1533..1629 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187090.5554664-CDS-P-wetherbeei_contig9376:1629..17531683187090.5554664-CDS-P-wetherbeei_contig9376:1629..1753Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9376 1630..1753 +
1683187090.566836-CDS-P-wetherbeei_contig9376:2038..20881683187090.566836-CDS-P-wetherbeei_contig9376:2038..2088Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9376 2039..2088 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9376.1.1prot_P-wetherbeei_contig9376.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9376 1630..2088 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9376.1.1

>prot_P-wetherbeei_contig9376.1.1 ID=prot_P-wetherbeei_contig9376.1.1|Name=mRNA_P-wetherbeei_contig9376.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=58bp
MRASLALLATCPLAAHAVFRTVCQTFSFAYMDPIVTPGKAAGHEHSIGGT
LGFADRTW
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mRNA from alignment at P-wetherbeei_contig9376:1533..2088+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9376.1.1 ID=mRNA_P-wetherbeei_contig9376.1.1|Name=mRNA_P-wetherbeei_contig9376.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=556bp|location=Sequence derived from alignment at P-wetherbeei_contig9376:1533..2088+ (Phaeothamnion wetherbeei SAG_119_79)
CATAAATCGGTGCGCCTTGGGTGCGAAGCACCGACTTCATTGCGCCCCAT
AGCGAAACGGGGACGCGGAAAGTGTGTTGTCGGTCCCAAAGACAAAAATG
AGGGCGTCGCTCGCCTTGCTTGCAACATGTCCTCTCGCCGCACATGCTGT
CTTCAGAACCGTCTGCCAGACTTTCTCCTTCGCCTACATGGATCCCATCG
TTACCCCGGGCAAGGCTGCGGGTGAGTCAGTCTGCGCGAACTCTCGGCTC
TGTGCGCCGCCTCACGCGTGCATCGCCTCGCCGAAGTGATCTTCGTGCTC
CCTCGTCGCCAGCTCCTGATGGCAAAATGCAAGGACCTCGTGACAGAATG
TTGTAACGCGGTTCATGCACCTTTCTCGCGCTCGAATGGTAGCTTTTCTC
CCTCTTTTCCTCAGTTATCCGGCGCGAGCTTTCCCACAGCGTACCACGGC
ATGCACAGTTAGAGTTTTGTTGTCTCACTCCTCACTCTTTTGTCCTTCTC
CCGCAGGCCATGAGCACAGCATCGGCGGCACTTTGGGATTTGCCGATCGC
ACCTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9376:1533..2088+

>mRNA_P-wetherbeei_contig9376.1.1 ID=mRNA_P-wetherbeei_contig9376.1.1|Name=mRNA_P-wetherbeei_contig9376.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=174bp|location=Sequence derived from alignment at P-wetherbeei_contig9376:1533..2088+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGGGCGTCGCTCGCCTTGCTTGCAACATGTCCTCTCGCCGCACATGC
TGTCTTCAGAACCGTCTGCCAGACTTTCTCCTTCGCCTACATGGATCCCA
TCGTTACCCCGGGCAAGGCTGCGGGCCATGAGCACAGCATCGGCGGCACT
TTGGGATTTGCCGATCGCACCTGG
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