mRNA_P-wetherbeei_contig9298.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9298.1.1
Unique NamemRNA_P-wetherbeei_contig9298.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig9298.1.1 vs. uniprot
Match: A0A835ZC43_9STRA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC43_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.200e-11
Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:  466 FQMGVSPSRS--TSPRGMRSACNFCHTKRIKCNRDEGAT---KCQQCVQRGMVCKFSPKEKTGPKP 648
            F M  +P +   TSPR +RSAC++CHTKRIKC RD+      +CQQCV+R + CKFS KEKTGPKP
Sbjct:   15 FPMRCTPGQQGGTSPRLLRSACDWCHTKRIKCKRDDSEPLGGRCQQCVRRNIECKFSYKEKTGPKP 80
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BLAST of mRNA_P-wetherbeei_contig9298.1.1 vs. uniprot
Match: A0A835YH07_9STRA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH07_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.480e-9
Identity = 31/46 (67.39%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:  511 MRSACNFCHTKRIKCNRDEGATKCQQCVQRGMVCKFSPKEKTGPKP 648
            +R+AC++CH+KRIKC   +G  KCQQC+QRG+ CKFS KEKTGPKP
Sbjct:   61 LRNACDWCHSKRIKCRHTDGP-KCQQCLQRGLECKFSVKEKTGPKP 105
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BLAST of mRNA_P-wetherbeei_contig9298.1.1 vs. uniprot
Match: A0A835Z4W4_9STRA (RNB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4W4_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 9.170e-7
Identity = 30/53 (56.60%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:  490 RSTSPRGMRSACNFCHTKRIKCNRDEGATKCQQCVQRGMVCKFSPKEKTGPKP 648
            R+  P  ++   +FCH+KRIKC +  G +KCQQC QR + CKFS KEKTGPKP
Sbjct:  708 RAGQPLTVKRCGDFCHSKRIKC-KSVGGSKCQQCTQRLIECKFSVKEKTGPKP 759
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BLAST of mRNA_P-wetherbeei_contig9298.1.1 vs. uniprot
Match: A0A0U5GQM4_ASPCI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Aspergillus calidoustus TaxID=454130 RepID=A0A0U5GQM4_ASPCI)

HSP 1 Score: 61.2 bits (147), Expect = 1.020e-6
Identity = 24/54 (44.44%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:  484 PSRSTSPRGMRSACNFCHTKRIKCNRDEGATKCQQCVQRGMVCKFSPKEKTGPK 645
            P RS  PR  RSACN CHT++++C R  G ++C++C++    C+F+P+ K G K
Sbjct:    4 PHRSNQPRKTRSACNKCHTQKLRCTRKPGQSRCERCLRLNAECRFAPRAKRGSK 57
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9298.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835ZC43_9STRA1.200e-1159.09Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A835YH07_9STRA1.480e-967.39Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A835Z4W4_9STRA9.170e-756.60RNB domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A0U5GQM4_ASPCI1.020e-644.44Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9298contigP-wetherbeei_contig9298:887..2412 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1051613.XP_003002636.1
PFAMsZn_clus
Model size1142
Max annot lvl4751|Fungi
Hectar predicted targeting categorysignal peptide
Exons2
Evalue9.34e-07
EggNOG OGs2EV22@1|root,2SX45@2759|Eukaryota,39ZKT@33154|Opisthokonta,3NVDH@4751|Fungi,3R224@4890|Ascomycota,21CV7@147550|Sordariomycetes,1F37E@1028384|Glomerellales
Ec32 ortholog descriptionZn(2)-C6 fungal-type DNA-binding domain
Ec32 orthologEc-18_003820.1
DescriptionGAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain
Cds size798
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187086.2349856-UTR-P-wetherbeei_contig9298:886..12281683187086.2349856-UTR-P-wetherbeei_contig9298:886..1228Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9298 887..1228 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187086.2452755-CDS-P-wetherbeei_contig9298:1228..13781683187086.2452755-CDS-P-wetherbeei_contig9298:1228..1378Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9298 1229..1378 +
1683187086.2540588-CDS-P-wetherbeei_contig9298:1764..24121683187086.2540588-CDS-P-wetherbeei_contig9298:1764..2412Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9298 1765..2412 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9298.1.1prot_P-wetherbeei_contig9298.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9298 1229..2412 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9298.1.1

>prot_P-wetherbeei_contig9298.1.1 ID=prot_P-wetherbeei_contig9298.1.1|Name=mRNA_P-wetherbeei_contig9298.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=266bp
MEGFPQSMMPSLMVPSMFSAGMLPTLSTATPPPTPGGGGQKFQMGVSPSR
STSPRGMRSACNFCHTKRIKCNRDEGATKCQQCVQRGMVCKFSPKEKTGP
KPNKDKPTTRPKGDSRSPSPSPVGHSRDGHGRGMPMQIPFGASGAMGMGG
MGVMRMGGPGGIGGGGGGGYPDVKRIPGNMAYGGAVKDNFVSGHHSGVST
PEMSPSPRAAELSPTNSVGGGASGFGGGGASGFGGGGGAASGSGPFSATA
TTEEQQIRERQFLITY
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mRNA from alignment at P-wetherbeei_contig9298:887..2412+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9298.1.1 ID=mRNA_P-wetherbeei_contig9298.1.1|Name=mRNA_P-wetherbeei_contig9298.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1526bp|location=Sequence derived from alignment at P-wetherbeei_contig9298:887..2412+ (Phaeothamnion wetherbeei SAG_119_79)
CTTCGGTTACGGGGGGTTTCTCACCACCCAGAAAACTCGGCTGTCAAAGG
GTCGCTCGGCGCTGCAGGTTGGTGAACGACGTCGGTAGCGATCGAGGCCA
CTCCGCAGAACACGAGCGGGGACTATAGGAGAGGCACCGCTACTGTCAGA
CGCTAGAGGGAGCGGCGAAGAGTCTGGAAGGCGCATCGTCCAAGGGCTTG
ACGGAGAAGGAGGAAGAGGCGTCAGGTCGGCAAACGACGCGTGGGTGAGG
GCTGGACGGACGGCTTGTGCACTTAGCGGCTCGCCGGAGGGCGAACGCGC
GAGGAACCGGCGCAGGCGAGGAGCTCAACAGCCGCGCTTGCGATGGAGGG
CTTTCCGCAGTCTATGATGCCGTCGCTGATGGTGCCGTCGATGTTCAGCG
CTGGCATGCTGCCGACGCTCTCGACGGCGACGCCACCGCCGACGCCGGGA
GGCGGCGGTCAGAAGTTTCAGATGGGCGTCAGTCCTTCGAGGGTGAGCAG
TCTGTCCCTCTTTTCCGCGCGTGCCTACTCGCATATTTAGCGCGCTTTTT
CATGGGCTTCCATGCTGCGCCTCGTTTCGAACACTGGCGCGCACCTTCGT
CGCCAGTTTGCCGCATCGTCTGTTTTCTCTTTGAAACCTACCACTCGCTC
AAGCCCTTTGGACCACCACGTCCAACGTGGAAGCGTTCAAAAAACTGCGC
GACAACTTGGAGCTGACGCCTGTGGGTGTGTCGTTCGCCGCGGCTGCGGC
GGCTCTTTTTTAATTCTCCCTTTCCATGCCCTGTCTGATTTCTGTGTGTG
GCCCCATCCCTCCCCAACCGACCACTGGGACGAACGTTGTCCGCCGACCA
CTTGGACAAACATCGTCCGTGCGCGCAGAGCACGAGCCCGCGCGGCATGC
GAAGCGCTTGTAACTTTTGCCACACGAAGCGGATCAAGTGCAACCGTGAC
GAGGGGGCGACAAAGTGCCAGCAGTGCGTGCAGCGCGGCATGGTCTGCAA
GTTCTCCCCCAAGGAGAAGACGGGGCCCAAACCCAACAAGGACAAGCCAA
CGACGCGGCCGAAGGGCGACTCCCGCTCGCCGTCGCCCTCCCCGGTGGGG
CATTCGAGGGACGGTCACGGACGGGGCATGCCGATGCAAATCCCGTTTGG
CGCATCGGGCGCGATGGGGATGGGTGGCATGGGCGTAATGCGCATGGGCG
GGCCTGGTGGCATCGGCGGCGGCGGCGGCGGAGGCTACCCCGATGTGAAG
CGGATCCCGGGAAACATGGCGTACGGCGGGGCGGTCAAGGACAATTTTGT
CAGCGGCCACCATTCAGGCGTCAGCACGCCGGAAATGTCCCCCAGCCCGC
GCGCGGCGGAACTTAGCCCAACGAACTCCGTTGGCGGCGGCGCCAGCGGA
TTTGGCGGCGGCGGCGCCAGCGGATTTGGCGGCGGCGGCGGGGCGGCCAG
CGGAAGCGGACCGTTCAGTGCCACGGCGACGACGGAGGAGCAGCAGATCC
GGGAGCGACAGTTTCTCATTACGTAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9298:887..2412+

>mRNA_P-wetherbeei_contig9298.1.1 ID=mRNA_P-wetherbeei_contig9298.1.1|Name=mRNA_P-wetherbeei_contig9298.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=798bp|location=Sequence derived from alignment at P-wetherbeei_contig9298:887..2412+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGGCTTTCCGCAGTCTATGATGCCGTCGCTGATGGTGCCGTCGAT
GTTCAGCGCTGGCATGCTGCCGACGCTCTCGACGGCGACGCCACCGCCGA
CGCCGGGAGGCGGCGGTCAGAAGTTTCAGATGGGCGTCAGTCCTTCGAGG
AGCACGAGCCCGCGCGGCATGCGAAGCGCTTGTAACTTTTGCCACACGAA
GCGGATCAAGTGCAACCGTGACGAGGGGGCGACAAAGTGCCAGCAGTGCG
TGCAGCGCGGCATGGTCTGCAAGTTCTCCCCCAAGGAGAAGACGGGGCCC
AAACCCAACAAGGACAAGCCAACGACGCGGCCGAAGGGCGACTCCCGCTC
GCCGTCGCCCTCCCCGGTGGGGCATTCGAGGGACGGTCACGGACGGGGCA
TGCCGATGCAAATCCCGTTTGGCGCATCGGGCGCGATGGGGATGGGTGGC
ATGGGCGTAATGCGCATGGGCGGGCCTGGTGGCATCGGCGGCGGCGGCGG
CGGAGGCTACCCCGATGTGAAGCGGATCCCGGGAAACATGGCGTACGGCG
GGGCGGTCAAGGACAATTTTGTCAGCGGCCACCATTCAGGCGTCAGCACG
CCGGAAATGTCCCCCAGCCCGCGCGCGGCGGAACTTAGCCCAACGAACTC
CGTTGGCGGCGGCGCCAGCGGATTTGGCGGCGGCGGCGCCAGCGGATTTG
GCGGCGGCGGCGGGGCGGCCAGCGGAAGCGGACCGTTCAGTGCCACGGCG
ACGACGGAGGAGCAGCAGATCCGGGAGCGACAGTTTCTCATTACGTAC
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