mRNA_P-wetherbeei_contig9291.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9291.2.1
Unique NamemRNA_P-wetherbeei_contig9291.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9291.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9291contigP-wetherbeei_contig9291:232..1708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size985
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_003730.1
Cds size723
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187086.0287209-UTR-P-wetherbeei_contig9291:231..2701683187086.0287209-UTR-P-wetherbeei_contig9291:231..270Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9291 232..270 +
1683187086.0647037-UTR-P-wetherbeei_contig9291:1485..17081683187086.0647037-UTR-P-wetherbeei_contig9291:1485..1708Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9291 1486..1708 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187086.040902-CDS-P-wetherbeei_contig9291:270..3171683187086.040902-CDS-P-wetherbeei_contig9291:270..317Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9291 271..317 +
1683187086.0541575-CDS-P-wetherbeei_contig9291:809..14851683187086.0541575-CDS-P-wetherbeei_contig9291:809..1485Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9291 810..1485 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9291.2.1prot_P-wetherbeei_contig9291.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9291 271..1485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9291.2.1

>prot_P-wetherbeei_contig9291.2.1 ID=prot_P-wetherbeei_contig9291.2.1|Name=mRNA_P-wetherbeei_contig9291.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=241bp
MIIKMKQMGEDYIARGFVPDDAVPPEVLVPSPADPSAELAAEVAAAGDGA
PYLFDEWVSDQKEAWLEDQEGLVAGGDGSFGGLTTDYADGADSAHRDSKW
APRIMRGRILAEDEVWAPPPPLSRQEAEEFDADRRRRRSERAREARRRSA
PVVLERMRVAEAGVLSRPPAPAGRRWEDAPAPLRPFGRAAAPRRRAPWRY
AMLDMSVRDAAALVRDEHGRLRLATDEEEACLSWNKPAAA*
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mRNA from alignment at P-wetherbeei_contig9291:232..1708+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9291.2.1 ID=mRNA_P-wetherbeei_contig9291.2.1|Name=mRNA_P-wetherbeei_contig9291.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1477bp|location=Sequence derived from alignment at P-wetherbeei_contig9291:232..1708+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGCCCGACAGCACCGCCTCGAGCGGCCACGCGTTGAGATGATCATCAA
GATGAAGCAGATGGGCGAGGACTACATCGCCCGCGGGTGCGCGTGCTGCC
GTTGTTATGCGTGAAATGTCTTGTGGTTCACCTGTTTTTTCACCCCTTTT
TGGCCCGGCAGCGTTTGGCAGCTCTTTCTTTTTTTTGAGACAGGGATAAA
TGGTCGCGATGGGGCAGTGGTGGCAGTAAGGGTCTCTATTCTCTTTCTAC
TCATACATCAACGATTTTTTCCCCCGAACTCGCCGAAATGAGACTCCAGA
GAGCGGCTGTCAGAAATGGAGAAAGACGTGTGTGGTTTCGGCAGCTTCCT
CTGATCTCTATGAAGCCGAAGGTCTTCTCGGTTGTCAGCGCCTAAGACCT
ATCTTTCCGGTTTCAATGTCCTCTGTTTTTTTGGCCAACGTTTGCTTGAA
GAATGGCAATCTCCTAGATTGCAAGCCTCATAACTCCTGATATTTTTACC
CTGGCTGACCCTGCCGCTGCAAAACCACCGCGAGAGCCGCCGCCAAACCG
CCGCCTGCCGCCCACCCTCTAAAAAAAGGTTCGTCCCGGACGACGCGGTG
CCGCCGGAGGTGCTGGTGCCGTCGCCGGCCGACCCGAGCGCCGAGCTGGC
TGCCGAGGTCGCTGCGGCCGGCGATGGGGCTCCCTACCTCTTCGACGAGT
GGGTGTCCGACCAGAAGGAAGCCTGGCTCGAGGACCAGGAGGGCTTGGTC
GCGGGCGGCGACGGATCATTCGGTGGCCTGACGACGGACTATGCCGACGG
CGCCGACTCTGCGCACCGCGACTCCAAGTGGGCACCGCGCATCATGCGCG
GGCGGATACTGGCCGAAGACGAAGTCTGGGCGCCGCCGCCGCCGCTGTCG
CGGCAGGAAGCGGAGGAGTTCGACGCCGACCGGCGGCGGCGGCGGTCCGA
GCGTGCACGCGAGGCACGCCGGCGGTCGGCGCCGGTGGTGCTGGAACGGA
TGCGCGTGGCGGAGGCAGGCGTGCTGTCACGGCCGCCGGCACCGGCGGGC
CGGCGGTGGGAGGACGCGCCGGCGCCGCTGCGACCGTTTGGGCGGGCGGC
GGCGCCGCGACGACGGGCACCATGGAGGTATGCCATGCTGGACATGTCGG
TGCGGGACGCGGCCGCGCTCGTGCGCGACGAGCATGGCCGGCTTCGGCTA
GCGACTGATGAGGAGGAGGCCTGTCTCTCGTGGAACAAACCTGCCGCAGC
CTGAGAGAGGATTGGAGAAGGCGAAAGACTGCGGTTTGACGGGAGTTGCG
CTGAAGCTGGCAGCGGCGGCGTTGGTGACGGCGAAGATCGCGGCAGCAAC
GGCTGCGGAGTATGCAGCAGCTGTGGCATCGTGTGCGGCAATGGTGACAA
CGATGTTCCAGGCTGCAACCAAACTCCGGGTCAACCGGGCCCGGCGCGAA
TGAATTAAGAAATCACTTGCGCACGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9291:232..1708+

>mRNA_P-wetherbeei_contig9291.2.1 ID=mRNA_P-wetherbeei_contig9291.2.1|Name=mRNA_P-wetherbeei_contig9291.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=723bp|location=Sequence derived from alignment at P-wetherbeei_contig9291:232..1708+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATCATCAAGATGAAGCAGATGGGCGAGGACTACATCGCCCGCGGGTT
CGTCCCGGACGACGCGGTGCCGCCGGAGGTGCTGGTGCCGTCGCCGGCCG
ACCCGAGCGCCGAGCTGGCTGCCGAGGTCGCTGCGGCCGGCGATGGGGCT
CCCTACCTCTTCGACGAGTGGGTGTCCGACCAGAAGGAAGCCTGGCTCGA
GGACCAGGAGGGCTTGGTCGCGGGCGGCGACGGATCATTCGGTGGCCTGA
CGACGGACTATGCCGACGGCGCCGACTCTGCGCACCGCGACTCCAAGTGG
GCACCGCGCATCATGCGCGGGCGGATACTGGCCGAAGACGAAGTCTGGGC
GCCGCCGCCGCCGCTGTCGCGGCAGGAAGCGGAGGAGTTCGACGCCGACC
GGCGGCGGCGGCGGTCCGAGCGTGCACGCGAGGCACGCCGGCGGTCGGCG
CCGGTGGTGCTGGAACGGATGCGCGTGGCGGAGGCAGGCGTGCTGTCACG
GCCGCCGGCACCGGCGGGCCGGCGGTGGGAGGACGCGCCGGCGCCGCTGC
GACCGTTTGGGCGGGCGGCGGCGCCGCGACGACGGGCACCATGGAGGTAT
GCCATGCTGGACATGTCGGTGCGGGACGCGGCCGCGCTCGTGCGCGACGA
GCATGGCCGGCTTCGGCTAGCGACTGATGAGGAGGAGGCCTGTCTCTCGT
GGAACAAACCTGCCGCAGCCTGA
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