mRNA_P-wetherbeei_contig9147.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9147.2.1
Unique NamemRNA_P-wetherbeei_contig9147.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9147.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9147contigP-wetherbeei_contig9147:1995..2426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size432
Hectar predicted targeting categoryother localisation
Exons1
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187078.520384-CDS-P-wetherbeei_contig9147:1994..23181683187078.520384-CDS-P-wetherbeei_contig9147:1994..2318Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9147 1995..2318 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187078.5310626-UTR-P-wetherbeei_contig9147:2318..24261683187078.5310626-UTR-P-wetherbeei_contig9147:2318..2426Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9147 2319..2426 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9147.2.1prot_P-wetherbeei_contig9147.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9147 1995..2318 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9147.2.1

>prot_P-wetherbeei_contig9147.2.1 ID=prot_P-wetherbeei_contig9147.2.1|Name=mRNA_P-wetherbeei_contig9147.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=108bp
MDGVALRLHGGPRLLHRPAPGAVTDRPLFRLHGWLVSGARGGWRDRRRRE
GGVESAIALHHSFCGMVSCLLPSNTLGHARCPFGFARYSVDSAARKPPSR
HRVVGHL*
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mRNA from alignment at P-wetherbeei_contig9147:1995..2426+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9147.2.1 ID=mRNA_P-wetherbeei_contig9147.2.1|Name=mRNA_P-wetherbeei_contig9147.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig9147:1995..2426+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGGCGTCGCTCTGCGTCTCCACGGCGGTCCTCGTCTTCTTCATCG
TCCTGCCCCAGGTGCTGTGACTGACCGACCGCTTTTTCGACTGCACGGGT
GGCTGGTCAGCGGTGCGCGCGGTGGCTGGCGTGACCGAAGGAGAAGGGAG
GGAGGTGTGGAGAGTGCCATCGCCCTCCACCATTCTTTCTGCGGCATGGT
TTCTTGTCTTCTTCCGTCGAACACCCTGGGCCATGCGCGATGCCCCTTCG
GGTTTGCCCGGTACTCCGTCGATAGCGCTGCAAGAAAACCGCCGTCCCGG
CATCGCGTTGTTGGGCATCTTTGATTGTTGTGTGCCGCCTCCCTTTCGAG
CAGTTGTACTGTGCTGTCTTTGTCGCACGACATCTCTTCTTCTGAAGGAA
CGGATTGGCTGATCTCTCAGCGTGTCAACCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9147:1995..2426+

>mRNA_P-wetherbeei_contig9147.2.1 ID=mRNA_P-wetherbeei_contig9147.2.1|Name=mRNA_P-wetherbeei_contig9147.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig9147:1995..2426+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGGCGTCGCTCTGCGTCTCCACGGCGGTCCTCGTCTTCTTCATCG
TCCTGCCCCAGGTGCTGTGACTGACCGACCGCTTTTTCGACTGCACGGGT
GGCTGGTCAGCGGTGCGCGCGGTGGCTGGCGTGACCGAAGGAGAAGGGAG
GGAGGTGTGGAGAGTGCCATCGCCCTCCACCATTCTTTCTGCGGCATGGT
TTCTTGTCTTCTTCCGTCGAACACCCTGGGCCATGCGCGATGCCCCTTCG
GGTTTGCCCGGTACTCCGTCGATAGCGCTGCAAGAAAACCGCCGTCCCGG
CATCGCGTTGTTGGGCATCTTTGA
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