mRNA_P-wetherbeei_contig9141.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9141.1.2
Unique NamemRNA_P-wetherbeei_contig9141.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig9141.1.2 vs. uniprot
Match: A0A835ZEU5_9STRA (Ribosomal protein L21e-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEU5_9STRA)

HSP 1 Score: 143 bits (360), Expect = 4.170e-36
Identity = 64/81 (79.01%), Postives = 72/81 (88.89%), Query Frame = 1 
Query:  232 MPHSFGYRARTRDMFSRGFRKSGVNPLSQYMIAYKIGDYVDIKVNPSIHKGMPFKSYHGRTGIVYNVTKRALGLRVNKLVS 474
            MPHS+GYR RTR MF+RGFRKSG  PLS YM  YK+GDYVDIKVNPSIHKGMPFK YHGRTG++YNVTKRA+G+RVNK V+
Sbjct:    1 MPHSYGYRGRTRQMFARGFRKSGYTPLSTYMTNYKLGDYVDIKVNPSIHKGMPFKHYHGRTGVIYNVTKRAVGVRVNKQVN 81
[Close]
BLAST of mRNA_P-wetherbeei_contig9141.1.2 vs. uniprot
Match: D8LFN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN3_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 5.550e-33
Identity = 63/81 (77.78%), Postives = 70/81 (86.42%), Query Frame = 1 
Query:  232 MPHSFGYRARTRDMFSRGFRKSGVNPLSQYMIAYKIGDYVDIKVNPSIHKGMPFKSYHGRTGIVYNVTKRALGLRVNKLVS 474
            MPHSFGYRARTRDMF+R F K+GVN LS Y+  YK GDYVDIK NPSIHKGMPFK YHGRTGIV+NVTK +LG+RVNK V+
Sbjct:    1 MPHSFGYRARTRDMFARDFGKNGVNELSIYLRKYKRGDYVDIKCNPSIHKGMPFKYYHGRTGIVFNVTKTSLGVRVNKQVN 81
[Close]
BLAST of mRNA_P-wetherbeei_contig9141.1.2 vs. uniprot
Match: A0A6H5K4I4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4I4_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 1.590e-32
Identity = 63/81 (77.78%), Postives = 70/81 (86.42%), Query Frame = 1 
Query:  232 MPHSFGYRARTRDMFSRGFRKSGVNPLSQYMIAYKIGDYVDIKVNPSIHKGMPFKSYHGRTGIVYNVTKRALGLRVNKLVS 474
            MPHSFGYRARTRDMF+R F K+GVN LS Y+  YK GDYVDIK NPSIHKGMPFK YHGRTGIV+NVTK +LG+RVNK V+
Sbjct:    1 MPHSFGYRARTRDMFARDFGKNGVNELSIYLRKYKRGDYVDIKCNPSIHKGMPFKYYHGRTGIVFNVTKTSLGVRVNKQVN 81
[Close]
BLAST of mRNA_P-wetherbeei_contig9141.1.2 vs. uniprot
Match: W7TSR6_9STRA (60s ribosomal protein l21-a n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSR6_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.190e-32
Identity = 62/81 (76.54%), Postives = 68/81 (83.95%), Query Frame = 1 
Query:  232 MPHSFGYRARTRDMFSRGFRKSGVNPLSQYMIAYKIGDYVDIKVNPSIHKGMPFKSYHGRTGIVYNVTKRALGLRVNKLVS 474
            MPHS+GYRARTR MF R F + GVNPLS YM  YK+GD VDIK NPSI KGMPFK YHGRTG+VYNVTKRALG+ VNKLV+
Sbjct:    1 MPHSYGYRARTRSMFRRDFGEHGVNPLSIYMRNYKVGDVVDIKANPSIQKGMPFKGYHGRTGVVYNVTKRALGVEVNKLVN 81
[Close]
BLAST of mRNA_P-wetherbeei_contig9141.1.2 vs. uniprot
Match: A0A7S2SVR4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVR4_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.690e-32
Identity = 62/81 (76.54%), Postives = 71/81 (87.65%), Query Frame = 1 
Query:  232 MPHSFGYRARTRDMFSRGFRKSGVNPLSQYMIAYKIGDYVDIKVNPSIHKGMPFKSYHGRTGIVYNVTKRALGLRVNKLVS 474
            MPHSFG+RARTRDM+SR F K+GVN LS Y+  +K GD+VDIK NPSIHKGMPFK YHGRTG+VYNVTKRALG+ VNKLV+
Sbjct:    1 MPHSFGHRARTRDMYSRPFGKNGVNKLSTYLTNFKRGDHVDIKCNPSIHKGMPFKHYHGRTGVVYNVTKRALGVCVNKLVN 81
[Close]
BLAST of mRNA_P-wetherbeei_contig9141.1.2 vs. uniprot
Match: A0A7S2XXW3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXW3_9STRA)

HSP 1 Score: 129 bits (325), Expect = 2.720e-31
Identity = 57/81 (70.37%), Postives = 70/81 (86.42%), Query Frame = 1 
Query:  232 MPHSFGYRARTRDMFSRGFRKSGVNPLSQYMIAYKIGDYVDIKVNPSIHKGMPFKSYHGRTGIVYNVTKRALGLRVNKLVS 474
            MPHSFGYRARTRDMFS+ F+K G+  +S+Y+  YK+GD VDIK NP+IHKGMP K YHGRTGI+YNVTKRA+G+ VNK+V+
Sbjct:    1 MPHSFGYRARTRDMFSQPFKKGGLIKMSKYLTTYKVGDCVDIKANPAIHKGMPHKHYHGRTGIIYNVTKRAVGVNVNKIVN 81
[Close]
BLAST of mRNA_P-wetherbeei_contig9141.1.2 vs. uniprot
Match: K3WAQ9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAQ9_GLOUD)

HSP 1 Score: 128 bits (322), Expect = 7.000e-31
Identity = 59/80 (73.75%), Postives = 69/80 (86.25%), Query Frame = 1 
Query:  232 MPHSFGYRARTRDMFSRGFRKSGVNPLSQYMIAYKIGDYVDIKVNPSIHKGMPFKSYHGRTGIVYNVTKRALGLRVNKLV 471
            MPHSFGYRARTRDMF+R FR+SG+  LS YM  +K+GDYVDIK N +IHKGMP K YHGRTG VYN+TKRA+G+RVNK+V
Sbjct:    1 MPHSFGYRARTRDMFARPFRQSGMIKLSTYMRTFKVGDYVDIKANGAIHKGMPHKFYHGRTGRVYNITKRAVGVRVNKIV 80
[Close]
BLAST of mRNA_P-wetherbeei_contig9141.1.2 vs. uniprot
Match: A0A2D4BIF9_PYTIN (60S ribosomal protein L21-1 n=25 Tax=Oomycota TaxID=4762 RepID=A0A2D4BIF9_PYTIN)

HSP 1 Score: 125 bits (314), Expect = 8.640e-30
Identity = 58/80 (72.50%), Postives = 68/80 (85.00%), Query Frame = 1 
Query:  232 MPHSFGYRARTRDMFSRGFRKSGVNPLSQYMIAYKIGDYVDIKVNPSIHKGMPFKSYHGRTGIVYNVTKRALGLRVNKLV 471
            MPHSFGYRARTRDMF+R FR+ G+  LS Y+  +K+GDYVDIK N +IHKGMP K YHGRTG VYNVTKRA+G+RVNK+V
Sbjct:    1 MPHSFGYRARTRDMFARPFRQRGMIKLSTYLRTFKVGDYVDIKANGAIHKGMPHKFYHGRTGRVYNVTKRAVGVRVNKVV 80
[Close]
BLAST of mRNA_P-wetherbeei_contig9141.1.2 vs. uniprot
Match: A0A6T5P9Z2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5P9Z2_HETAK)

HSP 1 Score: 124 bits (311), Expect = 2.960e-29
Identity = 56/81 (69.14%), Postives = 68/81 (83.95%), Query Frame = 1 
Query:  232 MPHSFGYRARTRDMFSRGFRKSGVNPLSQYMIAYKIGDYVDIKVNPSIHKGMPFKSYHGRTGIVYNVTKRALGLRVNKLVS 474
            MPHS GYRARTRDMF++ FR S V  LS +M+ YK+GDYVDI  +PS HKGMP K YHGRTGI++N+TKRA+G+RVNKLV+
Sbjct:    1 MPHSNGYRARTRDMFAKSFRTSAVTKLSTFMVNYKVGDYVDIFADPSQHKGMPHKFYHGRTGIIFNITKRAVGVRVNKLVN 81
[Close]
BLAST of mRNA_P-wetherbeei_contig9141.1.2 vs. uniprot
Match: A0A8K1FHU0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHU0_PYTOL)

HSP 1 Score: 123 bits (308), Expect = 5.660e-29
Identity = 56/80 (70.00%), Postives = 69/80 (86.25%), Query Frame = 1 
Query:  232 MPHSFGYRARTRDMFSRGFRKSGVNPLSQYMIAYKIGDYVDIKVNPSIHKGMPFKSYHGRTGIVYNVTKRALGLRVNKLV 471
            MPHSFGYRARTRDMF+R +R+SG+  LS Y+  +K+GD+VDIK N +IHKGMP K YHGRTG V+NVTKRA+G+RVNK+V
Sbjct:    1 MPHSFGYRARTRDMFARPYRQSGMVKLSTYLRTFKVGDFVDIKANGAIHKGMPHKFYHGRTGRVFNVTKRAVGVRVNKVV 80
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9141.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZEU5_9STRA4.170e-3679.01Ribosomal protein L21e-domain-containing protein n... [more]
D8LFN3_ECTSI5.550e-3377.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4I4_9PHAE1.590e-3277.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TSR6_9STRA2.190e-3276.5460s ribosomal protein l21-a n=2 Tax=Monodopsidacea... [more]
A0A7S2SVR4_9STRA2.690e-3276.54Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2XXW3_9STRA2.720e-3170.37Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
K3WAQ9_GLOUD7.000e-3173.75Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2D4BIF9_PYTIN8.640e-3072.5060S ribosomal protein L21-1 n=25 Tax=Oomycota TaxI... [more]
A0A6T5P9Z2_HETAK2.960e-2969.14Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8K1FHU0_PYTOL5.660e-2970.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9141contigP-wetherbeei_contig9141:237..2617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LFN3
Preferred nameRPL21
PFAMsRibosomal_L21e
Model size2044
Max annot lvl2759|Eukaryota
KEGG koko:K02889
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons3
Evalue1.13e-38
EggNOG OGsCOG2139@1|root,KOG1732@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein L21e
Ec32 orthologEc-04_001480.1
Descriptionstructural constituent of ribosome
Cds size273
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187078.2944741-UTR-P-wetherbeei_contig9141:236..4571683187078.2944741-UTR-P-wetherbeei_contig9141:236..457Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9141 237..457 +
1683187078.3082504-UTR-P-wetherbeei_contig9141:575..5851683187078.3082504-UTR-P-wetherbeei_contig9141:575..585Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9141 576..585 +
1683187078.3422651-UTR-P-wetherbeei_contig9141:1077..26171683187078.3422651-UTR-P-wetherbeei_contig9141:1077..2617Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9141 1078..2617 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187078.3198936-CDS-P-wetherbeei_contig9141:585..6901683187078.3198936-CDS-P-wetherbeei_contig9141:585..690Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9141 586..690 +
1683187078.3306642-CDS-P-wetherbeei_contig9141:909..10771683187078.3306642-CDS-P-wetherbeei_contig9141:909..1077Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9141 910..1077 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9141.1.2prot_P-wetherbeei_contig9141.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9141 586..1077 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9141.1.2

>prot_P-wetherbeei_contig9141.1.2 ID=prot_P-wetherbeei_contig9141.1.2|Name=mRNA_P-wetherbeei_contig9141.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=91bp
MPHSFGYRARTRDMFSRGFRKSGVNPLSQYMIAYKIGDYVDIKVNPSIHK
GMPFKSYHGRTGIVYNVTKRALGLRVNKLVSCPSGPFEPF*
back to top

mRNA from alignment at P-wetherbeei_contig9141:237..2617+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9141.1.2 ID=mRNA_P-wetherbeei_contig9141.1.2|Name=mRNA_P-wetherbeei_contig9141.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2381bp|location=Sequence derived from alignment at P-wetherbeei_contig9141:237..2617+ (Phaeothamnion wetherbeei SAG_119_79)
AGGTTTTCCGCAGCGAAAGGTGAGTAATAAGCACTGCGGAAGGTGTGCAC
GTCGTAGAAAGCGCGAACGTCGCACACGCAGAGGAAGTGAGAGCGAATAG
ATTTGGGAGGACAGGAAAGAGTGGAGGCAACGAGGGTGATCCAGCATCCT
CTTTTGGACGTCTGTCTCATCCAGCTATCTTTTATCCCGGTTCTGATATA
CAGCCGCTCCTGGGTCGCAAGGTCGTGCAACTTTTCTCCCATTCATTTCC
CCTCATCCAAACCTCCAGCTTCTCTTGCAAGGGGTTCTCTTAACCATCTT
TCCCTATTTTATTTCGGGACCTCTCTACTTGCACTTCAGGTTCGCAACCA
TGCCGCATTCCTTCGGGTACCGCGCGCGTACGCGCGACATGTTCTCGAGA
GGGTTCAGAAAGAGTGGTGTGAACCCTCTCTCGCAGTACATGATCGCATA
CAAGGTGATTATGGGGATGGATAATCTATTTGAATGCCCTCCTTTCTCCC
GCTGGTTTGCTCCCGTCACTTCCCGTCTTTCCAGCAAAACTTCTCACAAC
TGTGTTGGTTCTGTCGGATCGCCGTGGCGTACAAGAATAGCGAAATCTGA
GGCGGCTGCGATTTTCTGCGAGAGCGTCATCAAACCTACAATTGGAACGT
TCGTTTTCTTCTCAAAATTGCAGATTGGAGACTATGTGGATATTAAGGTG
AACCCGTCGATCCACAAGGGCATGCCGTTCAAATCGTACCACGGACGAAC
CGGAATCGTCTACAACGTCACCAAGCGCGCGCTCGGCCTCCGCGTCAACA
AGCTGGTGAGTTGTCCTTCGGGTCCATTCGAGCCCTTCTGACCGGAGCGG
CCGTGCGGCTGGCCGAGCCCGATAATATCGCCCTGCCGTTTCTTTCTTAC
TTTCTTTGGTTATTTAGTGTTCGGTCGCGTGGTGAAGATCCATCTGGGGC
GGCGACTGCTGCGCTGGTGACGACGGTGGCGGCGAGAGCGATGGCGGCAG
CAGCAACGGCAATACAGTGGCGATGGCTGCTGCAGCAACATGGCGGCGAC
ATCAGCGGTGGTGGCTGCTGCTGCCAAGGCTGCAAGCCTGACCAAGCCTT
TTCAGTGGTGGCTTAGGCAGTGGCGGTGGCAGCGACAGCGGCGACGGCAG
CAGCGGGGCGATAGGGGACTGGTAGCCATCGGGGACTCCAGCCGCCTGCT
GGGGCGGCTGCCGCAGCTGTGAAGGCGGCTGGAGCCGCACTGGTGGCAGC
TTCGGCGGTGTTGGGCCGCTGCTGCTTTCGATCGCCGCGTCTGCCGCCGC
CTGCATGGCCCTCCCAACGCGGTTCTGGCTCTTTCACCCAAGCCCAGGTT
GTCACGGGCAATCCGGGCTGCAATGGAGCCGCGAGTGAAAAAATCTCGCG
TCTTGTACTGCGTGACTAGTTGCCTGGATGTAAATTCAGCGCAGTGCCCT
TACGGATCCCGGGCGGTGGACCGAGTGTCTGATGGAAGGCGCTTCGCATC
TGGGCGACGGCCGACGGCGGGGCGGGGCGAACGTCCACGTCATGCCAACG
TCCTGCTCTCCAGCCGCTTAGAGCCGAATTGGCGTTGTTTGCTTAGCGGA
TCTGCTGCTGTTTCTCCGGGGATTGTAGGGAGGCTCCGGTCGGTGGCTGC
TGGTCCCGTCTGCCGGAAAAGCAGTGGCGTCGGAAGAACGCCAGTGAATT
AGTTATGAGCGGACAGACTGACTCACATGAGACGCGCCGGTGGTGTCGCT
GCCCATTCTGGCATGTAGAGAAGGGGGAGAGCTGTGGTCGTTTGGTTTCA
GGAAAGCTGGTGCGGTGCACATGTTTTTCCAGTTTACGGGGAACTGTTCC
AGCAAGGAAAGGCGCCGCGGTCCTGCTGTTACGTGCTATCATTTTCCAAG
CAGGTCATTTCAGCGGGCACGTGCCTTTGCCGTAATAGCCTTTGGCCAGC
CTCTTTTTTTGGGTTCGTTGCGAGGCTGTCATGAGCGGCGCATACCGCTT
TTTCGGTTACGATGTTCACGTATCGTATCGGTTATGTCTGACTGAGTCCG
TCTTATCTGTGTGCCGCCGCCGTGCTGATGTAGAACGGCATGCTCTCGCC
AATTGGCGCTGCGTGTTTCTTCGACCCATCGTCCCGCTATTCAACCACCT
TGCTCCGTCGTCCCGCTTACCAACGCTCTCGCTCTCCTTCTAGTTTCCTG
ATCAACGCTTCCCTTCCCTGCAACCACCGCGATCGATTGCAACTGCCTAA
AGCTGCCTGTTTGCTGTTCTCCCTGCCCTTCCCTGCCCGGCTTGTCCTTC
CAGCACAACGGGCGCATCCTCGAGAAGCGGATCAATGTGCGCGTGGAGCA
CGTGCACCCATCCAAGTGCCGCGCCGAGCTC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig9141:237..2617+

>mRNA_P-wetherbeei_contig9141.1.2 ID=mRNA_P-wetherbeei_contig9141.1.2|Name=mRNA_P-wetherbeei_contig9141.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig9141:237..2617+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCATTCCTTCGGGTACCGCGCGCGTACGCGCGACATGTTCTCGAG
AGGGTTCAGAAAGAGTGGTGTGAACCCTCTCTCGCAGTACATGATCGCAT
ACAAGATTGGAGACTATGTGGATATTAAGGTGAACCCGTCGATCCACAAG
GGCATGCCGTTCAAATCGTACCACGGACGAACCGGAATCGTCTACAACGT
CACCAAGCGCGCGCTCGGCCTCCGCGTCAACAAGCTGGTGAGTTGTCCTT
CGGGTCCATTCGAGCCCTTCTGA
back to top