mRNA_P-wetherbeei_contig9139.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9139.1.1
Unique NamemRNA_P-wetherbeei_contig9139.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9139.1.1 vs. uniprot
Match: A0A836CKJ1_9STRA (C2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKJ1_9STRA)

HSP 1 Score: 146 bits (368), Expect = 7.320e-38
Identity = 72/144 (50.00%), Postives = 94/144 (65.28%), Query Frame = 1
Query:    1 LDYRDIPPSMFAMQPFLEDAQQRQLTIGELYVHVIEARGLKASDLNGRSDPYCRLQLTGRFLSHGQEWPKEHRCGGVTDVCIRTLSPRWDEEFRFPVWRAGAVLRIWVWDWDRTSDDDLLGVLDIPLRGELMGQKVVDRWYAVK 432
            LD+R     +  + PFL       +++GEL V V+EARGL+A+D NGRSDPY  L +TGR+LSH QEWP E R    T V + TL P W+E F FPV RAGA L++ ++D D TS DDLLG L+I L  EL+    +DRWY ++
Sbjct:   48 LDFRHDSSRLALLTPFLHQEVHADMSVGELTVDVVEARGLRAADFNGRSDPYAVLVMTGRYLSHAQEWPPEARVTRRTAVKMFTLHPEWNETFAFPVRRAGARLQVLLYDKDLTSADDLLGCLEITLDEELLSGATIDRWYPLQ 191          
BLAST of mRNA_P-wetherbeei_contig9139.1.1 vs. uniprot
Match: D7FQN3_ECTSI (C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQN3_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 4.620e-37
Identity = 65/135 (48.15%), Postives = 90/135 (66.67%), Query Frame = 1
Query:    1 LDYRDIPPSMFAMQPFLEDAQQRQLTIGELYVHVIEARGLKASDLNGRSDPYCRLQLTGRFLSHGQEWPKEHRCGGVTDVCIRTLSPRWDEEFRFPVWRAGAVLRIWVWDWDRTSDDDLLGVLDIPLRGELMGQK 405
            +DYR I    F   P L+ + + ++TIG L+  V+EARGL + D  GRSDP+  L+LTGR+LSHGQEW +  R    T V   +L+P W+EEF  PV RAGAVLRI +WDW+ +  DD LG +++ + G+L+ QK
Sbjct:   54 MDYRSISGWKFPAWPLLQPSTRAKMTIGTLHAKVVEARGLISRDFAGRSDPFAELELTGRYLSHGQEWSEPLRVREKTRVIKFSLNPVWNEEFSLPVRRAGAVLRIRLWDWNASIPDDPLGHIEVKMGGDLLAQK 188          
BLAST of mRNA_P-wetherbeei_contig9139.1.1 vs. uniprot
Match: A0A6H5JW30_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW30_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 1.050e-34
Identity = 67/143 (46.85%), Postives = 92/143 (64.34%), Query Frame = 1
Query:    4 DYRDIPPSMFAMQPFLEDAQQRQLTIGELYVHVIEARGLKASD-LNGRSDPYCRLQLTGRFLSHGQEWPKEHRCGGVTDVCIRTLSPRWDEEFRFPVWRAGAVLRIWVWDWDRTSDDDLLGVLDIPLRGELMGQKVVDRWYAV 429
            DYR I P MF  +  L+  ++  ++IG L+V V+EARGL A D + G+SDPY  L LTGR+LS GQEW +  R    T     TL+P W+E F  P+ RAGA+LR+ +WDWDR S D+ LG +++ +  EL  QK +D WY +
Sbjct:   42 DYRSIKPWMFPARVLLKAKRKATISIGVLHVKVVEARGLMARDGMLGKSDPYVNLALTGRYLSTGQEWSERLRICDRTRTIKYTLNPVWNETFSLPIRRAGAILRVELWDWDRGSCDESLGSVEVSIDKELRSQKTIDTWYVL 184          
BLAST of mRNA_P-wetherbeei_contig9139.1.1 vs. uniprot
Match: D7G4V0_ECTSI (Protein kinase C, beta 1, like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4V0_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 2.410e-32
Identity = 67/136 (49.26%), Postives = 88/136 (64.71%), Query Frame = 1
Query:    4 DYRDIPPSMFAMQPFLEDAQQRQLTIGELYVHVIEARGLKASD-LNGRSDPYCRLQLTGRFLSHGQEWPKEHRCGGVTDVCIRTLSPRWDEEFRFPVWRAGAVLRIWVWDWDRTSDDDLLGVLDIPLRGELMGQKV 408
            DYR I P MF  +  L+  ++  ++IG L+V V+EARGL A D + G+SDPY  L LTGR+LS GQEW +  R    T     TL+P W+E F  PV RAGAVLR+ +WDWDR S DD LG +++ +  EL  QK+
Sbjct:   42 DYRSINPWMFPARVLLKAKRKATISIGVLHVKVVEARGLMARDGMLGKSDPYVNLALTGRYLSTGQEWSERLRICDRTRTIKYTLNPVWNETFSLPVRRAGAVLRVELWDWDRGSCDDSLGSVEVSIDKELRSQKL 177          
BLAST of mRNA_P-wetherbeei_contig9139.1.1 vs. uniprot
Match: A0A6H5JRL3_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL3_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 5.870e-27
Identity = 53/94 (56.38%), Postives = 67/94 (71.28%), Query Frame = 1
Query:  124 ASDLNGRSDPYCRLQLTGRFLSHGQEWPKEHRCGGVTDVCIRTLSPRWDEEFRFPVWRAGAVLRIWVWDWDRTSDDDLLGVLDIPLRGELMGQK 405
            ASD NG+SDPY +L LTGR+LSHGQEW +  R    T +   TL+P WDEEF  PV RAGAVL++ VWDWDR+S DD LG  ++ +  EL+ Q+
Sbjct:    2 ASDFNGKSDPYVKLCLTGRYLSHGQEWSERLRLKDRTRIIKTTLNPVWDEEFCLPVRRAGAVLKVEVWDWDRSSPDDPLGHFEVAIGEELLSQQ 95          
BLAST of mRNA_P-wetherbeei_contig9139.1.1 vs. uniprot
Match: A0A0L0G861_9EUKA (C2 domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G861_9EUKA)

HSP 1 Score: 84.7 bits (208), Expect = 1.120e-16
Identity = 52/144 (36.11%), Postives = 77/144 (53.47%), Query Frame = 1
Query:   16 IPPSMFAMQPFLEDAQQ----RQLTIGELYVHVIEARGLKASDL----NGRSDPYCRLQLTGRFLSHGQEWPKEHRCGGVTDVCIRTLSPRWDEEFRFPVWRAGAVLRIWVWDWDRTSDDDLLGVLDIPLRGELMGQKVVDRWY 423
            +P  ++   P+ E A Q    ++L  G LYVHVI A GL ASD        SDPYC++++     +  +E  K H+          TL+P WDEEF   VWR  A+L + V+D+D  S DD +G + +P+   L  Q++ D W+
Sbjct:    2 LPLWIYLFNPWTETADQLEGGKRLPFGRLYVHVIGASGLMASDYAMFSKPSSDPYCQIEVG----AIEKEIAKTHKINA-------TLNPNWDEEFVMNVWRPRAILTLKVYDYDTASKDDHIGEVHVPIE-MLRNQELHDLWF 133          
BLAST of mRNA_P-wetherbeei_contig9139.1.1 vs. uniprot
Match: A0A3P7Q210_DIBLA (C2 domain-containing protein n=1 Tax=Dibothriocephalus latus TaxID=60516 RepID=A0A3P7Q210_DIBLA)

HSP 1 Score: 77.0 bits (188), Expect = 6.020e-15
Identity = 50/118 (42.37%), Postives = 61/118 (51.69%), Query Frame = 1
Query:   79 IGELYVHVIEARGLKASDLNGRSDPYCRLQLTGRFLSHGQEWPKEHRCGGVTDVCIRTLSPRWDEEFRFPVWRAGAVLRIWVWDWDRTSDDDLLGVLDIPLRGELMGQKVVDRWYAVK 432
            +G L V VI A  L+A DLNG+SDPYC L+L    +               T    +TLSPRWD+ F FPV    AVL + V D D+T  D  LG L IPL   L  +     WYA+K
Sbjct:   14 VGFLRVKVIAATDLEAKDLNGKSDPYCMLELQNMRVQ--------------TQTIEKTLSPRWDKTFIFPVTDIHAVLSVKVMDQDKTKSD-FLGRLVIPL---LWMKNNEQSWYALK 113          
BLAST of mRNA_P-wetherbeei_contig9139.1.1 vs. uniprot
Match: A0A1D1VGE5_RAMVA (Uncharacterized protein n=2 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1VGE5_RAMVA)

HSP 1 Score: 80.1 bits (196), Expect = 1.000e-14
Identity = 46/118 (38.98%), Postives = 61/118 (51.69%), Query Frame = 1
Query:   79 IGELYVHVIEARGLKASDLNGRSDPYCRLQLTGRFLSHGQEWPKEHRCGGVTDVCIRTLSPRWDEEFRFPVWRAGAVLRIWVWDWDRTSDDDLLGVLDIPLRGELMGQKVVDRWYAVK 432
            +G + V V    GL+A+DLNG+SDPYC LQL    +               T V ++TL P W+ EF FPV    AVL + V+D D+    D LG + +PL   L       RWYA+K
Sbjct:  446 VGTVTVKVFRGYGLRAADLNGKSDPYCVLQLVNARMQ--------------TQVELKTLDPEWNREFTFPVNDIHAVLDVTVYDMDQDKKSDFLGRIAVPL---LKIHNRERRWYALK 546          
BLAST of mRNA_P-wetherbeei_contig9139.1.1 vs. uniprot
Match: A0A8J5XCD6_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XCD6_DIALT)

HSP 1 Score: 77.4 bits (189), Expect = 9.270e-14
Identity = 42/98 (42.86%), Postives = 54/98 (55.10%), Query Frame = 1
Query:   88 LYVHVIEARGLKASDLNGRSDPYCRLQLTGRFLSHGQEWPKEHRCGGVTDVCIRTLSPRWDEEFRFPVWRAGAVLRIWVWDWDRTSDDDLLGVLDIPL 381
            L V ++EARGLKA D NG SDPY R+   G        W         T V  RTL PRWDE+  F + R+ A+L + ++DWD  +  D LG L IP+
Sbjct: 1462 LSVRLLEARGLKAGDANGLSDPYARVFCAGSI------WQ--------TSVVARTLDPRWDEQREFAIDRSDALLHVVIFDWDAYNSHDYLGELLIPV 1545          
BLAST of mRNA_P-wetherbeei_contig9139.1.1 vs. uniprot
Match: A0A2I0AXQ8_9ASPA (C2 and GRAM domain-containing protein n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AXQ8_9ASPA)

HSP 1 Score: 76.6 bits (187), Expect = 1.650e-13
Identity = 53/124 (42.74%), Postives = 64/124 (51.61%), Query Frame = 1
Query:   85 ELYVHVIEARGLKASDLNGRSDPYCRLQLTGRFLSHGQEWPKEHRCGGVTDVCIRTLSPRWDEEFRFPVWRAGAVLRIWVWDWDRTSDDDLLGVLDIPLRGELMGQKVVDR--------WYAVK 432
            +L+VHVIEARGL A DLNG SDPY +LQL             +HR    T V  ++L+P WDEEF F V      L I V D D+   DD LG + +PL       KV+D         WY VK
Sbjct:    2 KLHVHVIEARGLPAMDLNGLSDPYVKLQLG------------KHRA--KTKVVKKSLNPWWDEEFIFQVGDLREELTISVLDEDKYFSDDFLGQVKLPL------SKVMDSEDLSLGTTWYQVK 105          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9139.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CKJ1_9STRA7.320e-3850.00C2 domain-containing protein n=1 Tax=Tribonema min... [more]
D7FQN3_ECTSI4.620e-3748.15C2 domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JW30_9PHAE1.050e-3446.85C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D7G4V0_ECTSI2.410e-3249.26Protein kinase C, beta 1, like n=1 Tax=Ectocarpus ... [more]
A0A6H5JRL3_9PHAE5.870e-2756.38C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A0L0G861_9EUKA1.120e-1636.11C2 domain-containing protein n=1 Tax=Sphaeroforma ... [more]
A0A3P7Q210_DIBLA6.020e-1542.37C2 domain-containing protein n=1 Tax=Dibothrioceph... [more]
A0A1D1VGE5_RAMVA1.000e-1438.98Uncharacterized protein n=2 Tax=Ramazzottius varie... [more]
A0A8J5XCD6_DIALT9.270e-1442.86Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A2I0AXQ8_9ASPA1.650e-1342.74C2 and GRAM domain-containing protein n=1 Tax=Apos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9139contigP-wetherbeei_contig9139:1251..2309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FQN3
PFAMsC2,SMP_LBD
Model size432
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.94e-35
EggNOG OGsKOG1030@1|root,KOG1030@2759|Eukaryota
DescriptionGTPase activator activity
Cds size405
COG categoryDTZ
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187078.054897-UTR-P-wetherbeei_contig9139:1250..12771683187078.054897-UTR-P-wetherbeei_contig9139:1250..1277Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9139 1251..1277 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187078.0805418-CDS-P-wetherbeei_contig9139:1277..13341683187078.0805418-CDS-P-wetherbeei_contig9139:1277..1334Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9139 1278..1334 +
1683187078.1018279-CDS-P-wetherbeei_contig9139:1467..15811683187078.1018279-CDS-P-wetherbeei_contig9139:1467..1581Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9139 1468..1581 +
1683187078.113581-CDS-P-wetherbeei_contig9139:1850..20571683187078.113581-CDS-P-wetherbeei_contig9139:1850..2057Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9139 1851..2057 +
1683187078.1321568-CDS-P-wetherbeei_contig9139:2282..23091683187078.1321568-CDS-P-wetherbeei_contig9139:2282..2309Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9139 2283..2309 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9139.1.1prot_P-wetherbeei_contig9139.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9139 1278..2309 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9139.1.1

>prot_P-wetherbeei_contig9139.1.1 ID=prot_P-wetherbeei_contig9139.1.1|Name=mRNA_P-wetherbeei_contig9139.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=135bp
MFAMQPFLEDAQQRQLTIGELYVHVIEARGLKASDLNGRSDPYCRLQLTG
RFLSHGQEWPKEHRCGGVTDVCIRTLSPRWDEEFRFPVWRAGAVLRIWVW
DWDRTSDDDLLGVLDIPLRGELMGQKVVDRWYAVK
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mRNA from alignment at P-wetherbeei_contig9139:1251..2309+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9139.1.1 ID=mRNA_P-wetherbeei_contig9139.1.1|Name=mRNA_P-wetherbeei_contig9139.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1059bp|location=Sequence derived from alignment at P-wetherbeei_contig9139:1251..2309+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGACTACAGAGACATCCCGCCGAGCATGTTCGCCATGCAGCCATTCCT CGAGGATGCGCAGCAGCGGCAACTCACAATCGGAGTGAGTTGACAGGCGC AAAAGCCATAACCTCTCTCATTCTCTCGCGAAAAAGAATTTCTTCTGAAC TAACACCCTGGAGCACTTTTGAAACCGATACAGCTGACCTTCTCCCATTA ATCCAAACGAGGAGTAGGAGCTGTACGTACACGTGATCGAGGCCAGGGGG TTGAAGGCAAGCGACCTCAATGGAAGGAGCGATCCATACTGCCGCCTTCA ACTGACCGGCCGTTTCCTCTCGCACGGACAGGTACGGCTGTTAAGGACGA CGAATATTGCCTTCGGAGCAACCCAGCAAACGACAAAAATTGTTTTGCAG ATATCCAATCTGAAGCTCTTCTGCTTTAAGCACCGGTACATTAAGGATTT GAAAACTGTTCATTTAACAACCTTGACATGTCCCAGTTATCTTTCGCACA CTTTCGGTCCGTGGCGCTCATCCTGCGGCCGCCGTCGCCGACCCCCAACC CCTACCCCCACCGGCCCCCTTCGGCTGTTCCCTCTCGCGAAAAACAACAG GAATGGCCGAAAGAGCATCGCTGTGGCGGTGTGACAGACGTCTGCATCCG GACGCTGTCACCGCGCTGGGACGAGGAGTTCCGCTTCCCGGTGTGGCGAG CGGGGGCCGTGCTGCGCATCTGGGTGTGGGACTGGGATCGGACATCCGAC GATGACCTGCTGGGCGTCCTGGACATTCCGTTGCGGGGGGAGCTCATGGG CCAGAAGGTGCGCTTCTTAAAAAGTTTTGATTTGGAAGCTAGCGGGCAGC TGCTTGCAGCTGACGGACTATAGGGCATGGACAGGGCGGGATATGGGCGC GCCCGGGACGAGAATGTTTAAACCCGTCTACGTCCAGCCCTTTTGCTATT GATATTCACGTCTTTCCGGAACATAAAGCAATCTGAAATGTGCCGCTGGG AACACGGGCCCTTTTTGTTAAAACTGCAACAGGTGGTCGACCGGTGGTAT GCCGTGAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9139:1251..2309+

>mRNA_P-wetherbeei_contig9139.1.1 ID=mRNA_P-wetherbeei_contig9139.1.1|Name=mRNA_P-wetherbeei_contig9139.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig9139:1251..2309+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCGCCATGCAGCCATTCCTCGAGGATGCGCAGCAGCGGCAACTCAC
AATCGGAGAGCTGTACGTACACGTGATCGAGGCCAGGGGGTTGAAGGCAA
GCGACCTCAATGGAAGGAGCGATCCATACTGCCGCCTTCAACTGACCGGC
CGTTTCCTCTCGCACGGACAGGAATGGCCGAAAGAGCATCGCTGTGGCGG
TGTGACAGACGTCTGCATCCGGACGCTGTCACCGCGCTGGGACGAGGAGT
TCCGCTTCCCGGTGTGGCGAGCGGGGGCCGTGCTGCGCATCTGGGTGTGG
GACTGGGATCGGACATCCGACGATGACCTGCTGGGCGTCCTGGACATTCC
GTTGCGGGGGGAGCTCATGGGCCAGAAGGTGGTCGACCGGTGGTATGCCG
TGAAG
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