mRNA_P-wetherbeei_contig9132.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9132.4.1
Unique NamemRNA_P-wetherbeei_contig9132.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9132.4.1 vs. uniprot
Match: A0A419KI31_9ARCH (Acyl carrier protein n=1 Tax=Candidatus Bathyarchaeota archaeon TaxID=2026714 RepID=A0A419KI31_9ARCH)

HSP 1 Score: 65.1 bits (157), Expect = 3.160e-12
Identity = 30/68 (44.12%), Postives = 47/68 (69.12%), Query Frame = 1
Query:   25 IIALVASELEIPESRLNAGSSIDTTPEWDSVGHLNICLAVQDRFGVSLDMEEISQLTSIAALAGLLEK 228
            +  ++AS LEIPE+R+N   S+    +WDS+GHL + LAV++ FGV  +  EIS+LTS+  +A  L++
Sbjct:    6 LFKVIASVLEIPENRVNPELSLGDVEKWDSLGHLELILAVEEAFGVKFNSTEISELTSVGKIAARLKE 73          
BLAST of mRNA_P-wetherbeei_contig9132.4.1 vs. uniprot
Match: A0A4P5SCZ0_9ACTN (Carrier domain-containing protein n=3 Tax=root TaxID=1 RepID=A0A4P5SCZ0_9ACTN)

HSP 1 Score: 62.4 bits (150), Expect = 3.940e-11
Identity = 27/70 (38.57%), Postives = 45/70 (64.29%), Query Frame = 1
Query:    1 VSEQAVREIIALVASELEIPESRLNAGSSIDTTPEWDSVGHLNICLAVQDRFGVSLDMEEISQLTSIAAL 210
            +S+    +++A+V  EL +P   +N  S+ D    WDS+GHL IC+A++  FGVS  +EE+ Q+ S+ A+
Sbjct:    2 ISDPLELKVVAVVTRELSVPPGSINLLSTSDDVDRWDSLGHLQICMALEAEFGVSPGLEEVGQINSVPAI 71          
BLAST of mRNA_P-wetherbeei_contig9132.4.1 vs. uniprot
Match: A0A535RPE5_9CHLR (Acyl carrier protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535RPE5_9CHLR)

HSP 1 Score: 61.2 bits (147), Expect = 1.040e-10
Identity = 27/72 (37.50%), Postives = 44/72 (61.11%), Query Frame = 1
Query:   16 VREIIALVASELEIPESRLNAGSSIDTTPEWDSVGHLNICLAVQDRFGVSLDMEEISQLTSIAALAGLLEKA 231
            V +++ L+A  LE+   R+   +      EWDS+GHL ICLAV +R+G  + +E+I +L S+ AL   L ++
Sbjct:    5 VEDLLGLIARALEVRRERVTPETRSADLAEWDSLGHLRICLAVTERYGTEISLEQIGELDSVTALFAFLRRS 76          
BLAST of mRNA_P-wetherbeei_contig9132.4.1 vs. uniprot
Match: A0A7K1B542_9ACTN (Carrier domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A7K1B542_9ACTN)

HSP 1 Score: 60.5 bits (145), Expect = 2.050e-10
Identity = 25/70 (35.71%), Postives = 44/70 (62.86%), Query Frame = 1
Query:   16 VREIIALVASELEIPESRLNAGSSIDTTPEWDSVGHLNICLAVQDRFGVSLDMEEISQLTSIAALAGLLE 225
            V  I+ L+ +EL++ E  +   S++D    WDS+GHL +C+A++   GV + ME++ +L S+ A+   LE
Sbjct:    5 VNAILELMVAELDLDEGEIEPTSTMDEVENWDSLGHLRVCMALEAAHGVKIPMEKVPELVSVPAIVAFLE 74          
BLAST of mRNA_P-wetherbeei_contig9132.4.1 vs. uniprot
Match: A0A2U1WPH0_9PROT (Carrier domain-containing protein n=2 Tax=Azospirillum sp. TSA6c TaxID=709813 RepID=A0A2U1WPH0_9PROT)

HSP 1 Score: 60.1 bits (144), Expect = 2.830e-10
Identity = 26/66 (39.39%), Postives = 48/66 (72.73%), Query Frame = 1
Query:   25 IIALVASELEIPESRLNAGSSIDTTPEWDSVGHLNICLAVQDRFGVSLDMEEISQLTSIAALAGLL 222
            +  LVA+ L++  S + + +S+ TTPEWDS+ H+ + LA++DRFG+ LD +EI+ +T++ ++  +L
Sbjct:    3 VTQLVATVLKVEPSSVTSETSMKTTPEWDSLRHMELILAIEDRFGLILDGDEIACMTTVGSIHDVL 68          
BLAST of mRNA_P-wetherbeei_contig9132.4.1 vs. uniprot
Match: A0A7C4PH94_9CHLR (Acyl carrier protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C4PH94_9CHLR)

HSP 1 Score: 58.2 bits (139), Expect = 2.570e-9
Identity = 27/71 (38.03%), Postives = 42/71 (59.15%), Query Frame = 1
Query:   16 VREIIALVASELEIPESRLNAGSSIDTTPEWDSVGHLNICLAVQDRFGVSLDMEEISQLTSIAALAGLLEK 228
            V +I AL+   L IP  +     S    P+WDS+GH+ + + +++RFGV +  E IS LTSI A+   L++
Sbjct:   20 VEQIQALLVEALRIPAEQATPDLSFGDLPQWDSMGHMEVMMLLEERFGVEISAETISALTSIPAICAYLQE 90          
BLAST of mRNA_P-wetherbeei_contig9132.4.1 vs. uniprot
Match: A0A2D5ZAN3_9BACT (Acyl carrier protein n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A2D5ZAN3_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 2.730e-9
Identity = 25/74 (33.78%), Postives = 47/74 (63.51%), Query Frame = 1
Query:    4 SEQAVREIIALVASELEIPESRLNAGSSIDTTPEWDSVGHLNICLAVQDRFGVSLDMEEISQLTSIAALAGLLE 225
            +E  V ++   +A    +  ++++  SS++T   WDS+GH+N+ LA++  FG+ +D EEI QLTS+  +A  ++
Sbjct:    2 AETTVEQVKQTLADVFGLDAAQVSETSSMETIEAWDSMGHMNLVLALEQAFGIGIDPEEIPQLTSVGVIAARID 75          
BLAST of mRNA_P-wetherbeei_contig9132.4.1 vs. uniprot
Match: A0A4R6QPA5_9BURK (Acyl carrier protein n=1 Tax=Paucibacter toxinivorans TaxID=270368 RepID=A0A4R6QPA5_9BURK)

HSP 1 Score: 56.2 bits (134), Expect = 1.000e-8
Identity = 28/65 (43.08%), Postives = 43/65 (66.15%), Query Frame = 1
Query:   34 LVASELEIPESRLNAGSSIDTTPEWDSVGHLNICLAVQDRFGVSLDMEEISQLTSIAALAGLLEK 228
            ++AS LE+ E+ LN  SS+D  P WDS+  +N+ LA+++ FGVS+  E+    TS   LA +LE+
Sbjct:   10 VMASVLEVDEASLNDDSSMDNVPGWDSLKQMNLVLALEESFGVSIPDEDAGNATSYKLLALVLEE 74          
BLAST of mRNA_P-wetherbeei_contig9132.4.1 vs. uniprot
Match: A0A2E0YVW5_9GAMM (Carrier domain-containing protein n=1 Tax=Halioglobus sp. TaxID=2024834 RepID=A0A2E0YVW5_9GAMM)

HSP 1 Score: 56.2 bits (134), Expect = 1.000e-8
Identity = 23/64 (35.94%), Postives = 44/64 (68.75%), Query Frame = 1
Query:   34 LVASELEIPESRLNAGSSIDTTPEWDSVGHLNICLAVQDRFGVSLDMEEISQLTSIAALAGLLE 225
            ++++ L +P S +   S++D   EWDS+GH+NI +A++  F + +D+E+ ++L S+ A+ G LE
Sbjct:   10 IMSTTLSLPASAIQETSTMDDIEEWDSLGHVNIMVALEQAFDLYMDVEDFAELDSVPAILGYLE 73          
BLAST of mRNA_P-wetherbeei_contig9132.4.1 vs. uniprot
Match: A0A428V8U0_AERSA (Acyl carrier protein n=13 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A428V8U0_AERSA)

HSP 1 Score: 55.8 bits (133), Expect = 1.290e-8
Identity = 24/63 (38.10%), Postives = 44/63 (69.84%), Query Frame = 1
Query:   16 VREIIALVASELEIPESRLNAGSSIDTTPEWDSVGHLNICLAVQDRFGVSLDMEEISQLTSIA 204
            + ++IALV  +   P++ +NA S++ + PEWDS+GH N+ L ++  FGV  + +E+++L S+A
Sbjct:    1 MNDLIALVRQQF--PQASVNAQSALGSFPEWDSLGHFNLLLLIEQHFGVRFEPQELAELKSLA 61          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9132.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A419KI31_9ARCH3.160e-1244.12Acyl carrier protein n=1 Tax=Candidatus Bathyarcha... [more]
A0A4P5SCZ0_9ACTN3.940e-1138.57Carrier domain-containing protein n=3 Tax=root Tax... [more]
A0A535RPE5_9CHLR1.040e-1037.50Acyl carrier protein n=1 Tax=Chloroflexi bacterium... [more]
A0A7K1B542_9ACTN2.050e-1035.71Carrier domain-containing protein n=2 Tax=root Tax... [more]
A0A2U1WPH0_9PROT2.830e-1039.39Carrier domain-containing protein n=2 Tax=Azospiri... [more]
A0A7C4PH94_9CHLR2.570e-938.03Acyl carrier protein n=1 Tax=Chloroflexi bacterium... [more]
A0A2D5ZAN3_9BACT2.730e-933.78Acyl carrier protein n=1 Tax=Phycisphaeraceae bact... [more]
A0A4R6QPA5_9BURK1.000e-843.08Acyl carrier protein n=1 Tax=Paucibacter toxinivor... [more]
A0A2E0YVW5_9GAMM1.000e-835.94Carrier domain-containing protein n=1 Tax=Halioglo... [more]
A0A428V8U0_AERSA1.290e-838.10Acyl carrier protein n=13 Tax=Gammaproteobacteria ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9132contigP-wetherbeei_contig9132:2125..2358 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog380703.AHA_4187
PFAMsAfsA,DUF1493,PP-binding
Model size234
Max annot lvl2|Bacteria
KEGG koko:K02078
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.46e-08
EggNOG OGsCOG0236@1|root,COG0236@2|Bacteria
DescriptionCarrier of the growing fatty acid chain in fatty acid biosynthesis
Cds size234
COG categoryIQ
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187077.6531446-CDS-P-wetherbeei_contig9132:2124..23581683187077.6531446-CDS-P-wetherbeei_contig9132:2124..2358Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9132 2125..2358 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9132.4.1prot_P-wetherbeei_contig9132.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9132 2125..2358 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9132.4.1

>prot_P-wetherbeei_contig9132.4.1 ID=prot_P-wetherbeei_contig9132.4.1|Name=mRNA_P-wetherbeei_contig9132.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=78bp
VSEQAVREIIALVASELEIPESRLNAGSSIDTTPEWDSVGHLNICLAVQD
RFGVSLDMEEISQLTSIAALAGLLEKA*
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mRNA from alignment at P-wetherbeei_contig9132:2125..2358-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9132.4.1 ID=mRNA_P-wetherbeei_contig9132.4.1|Name=mRNA_P-wetherbeei_contig9132.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig9132:2125..2358- (Phaeothamnion wetherbeei SAG_119_79)
GTGAGCGAGCAAGCCGTCCGCGAGATCATCGCCCTGGTCGCGTCTGAACT GGAGATACCGGAAAGCCGGCTGAATGCCGGCTCGTCCATCGACACCACAC CGGAATGGGACTCGGTCGGCCATCTCAACATCTGCCTGGCCGTTCAGGAC CGCTTCGGCGTCAGTCTCGACATGGAGGAAATCAGCCAACTGACCAGCAT CGCAGCGCTGGCCGGCCTCCTCGAAAAGGCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9132:2125..2358-

>mRNA_P-wetherbeei_contig9132.4.1 ID=mRNA_P-wetherbeei_contig9132.4.1|Name=mRNA_P-wetherbeei_contig9132.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig9132:2125..2358- (Phaeothamnion wetherbeei SAG_119_79)
GTGAGCGAGCAAGCCGTCCGCGAGATCATCGCCCTGGTCGCGTCTGAACT
GGAGATACCGGAAAGCCGGCTGAATGCCGGCTCGTCCATCGACACCACAC
CGGAATGGGACTCGGTCGGCCATCTCAACATCTGCCTGGCCGTTCAGGAC
CGCTTCGGCGTCAGTCTCGACATGGAGGAAATCAGCCAACTGACCAGCAT
CGCAGCGCTGGCCGGCCTCCTCGAAAAGGCCTGA
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