mRNA_P-wetherbeei_contig9122.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9122.1.1
Unique NamemRNA_P-wetherbeei_contig9122.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig9122.1.1 vs. uniprot
Match: A0A7X9AG59_9BURK (Flagellar brake protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X9AG59_9BURK)

HSP 1 Score: 209 bits (533), Expect = 7.920e-65
Identity = 108/220 (49.09%), Postives = 165/220 (75.00%), Query Frame = 1 
Query:    1 LFGGGKKKKSPFKLTARQEVEVEFEAGDG-VYESHFVTVQDVQKKKIVIAAPGSDRKPVRLVPGQRVTVSVLTDDTHLSYEASVNDVQDREIELSYPPKDHEEVTLPARDDSFQVKVPIPVEFRAMSTAHTQVANTHAVTLNGLFLTTNLPIPPNTSLLMELEIPNAPDITAKGRAVTSQEDTSTGRKRFITEVEYEDVSEKDRNTIIRYALFYQQRQTR 657
            +F   KKKK+  KL  +QEVE+EF + +   YE +F  V D+Q+KK+++ APG++R+P+R+ PGQ+VT++ L ++T  +++A+V D  +RE +++ P   H+E  LPARD++F+++VPI VE+RAM+TAHTQVA T A+T  GL L TNLPIPP TSL MELEIP+ PDI  KGRA++S++     + + ++E+E+ED+SE DR+ I+RYA++ ++RQ R
Sbjct:    2 IFNLFKKKKAGLKLRPKQEVEIEFLSDESDSYECYFTRVLDIQRKKVILKAPGTERRPIRMFPGQQVTITTLDENTLYAFQATVLDATEREFDITPPANVHDE-ELPARDENFRLEVPITVEYRAMNTAHTQVAQTFAITSAGLVLATNLPIPPGTSLHMELEIPSTPDIRTKGRAISSEKHPDQ-KSKHLSEIEFEDMSESDRDAILRYAIYSRRRQER 219
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BLAST of mRNA_P-wetherbeei_contig9122.1.1 vs. uniprot
Match: A0A7Z9PYB8_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9PYB8_9BACT)

HSP 1 Score: 186 bits (471), Expect = 1.870e-55
Identity = 109/226 (48.23%), Postives = 146/226 (64.60%), Query Frame = 1 
Query:    1 LFGGGKKKKSPFKLTARQEVEVEFEAGDGVYESHFVTVQDVQKKKIVIAAPGSDRKPVRLVPGQRVTVSVL--TDDTHLSYEASVNDVQDREIELSYPPKDHEEVT-LPARDDSFQVKVPIPVEFRAMSTAHTQVANTHAVTLNGLFLTTNLPIPPNTSLLMELEIPNAPDITAKGRAVTSQEDTSTGRKRFITEVEYEDVSEKDRNTIIRYALFYQQRQTRNEKR 669
            LFGGGK     FK    Q VE+EFE  DG ++S+FV + +V KK + +AAPG+D  PV + PG  +TVS      D   SY+  V D +DRE E+  P K+  E   +P RDDSF+V+V IPV F+A  T H Q+A+THAVT N L+L TNL IPP T L + LE+PNA  I    RAV S++D +  RK  I+EV+ E+VSEKDR  I++YA+++++R  R E R
Sbjct:    6 LFGGGK---PTFKPATHQTVEIEFEDLDGDFQSYFVEILEVSKKSLTLAAPGNDMNPVNISPGIPITVSFFDAAKDKFFSYKGLVKDSRDREFEIEAPNKNTVEAEDVPPRDDSFRVEVSIPVRFQARRTVHAQMASTHAVTPNSLYLKTNLGIPPETDLRVVLEVPNAHQIEVDARAVGSEKDPADNRK-HISEVQLEEVSEKDREDILKYAVYFERRAKRAESR 227
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9122.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7X9AG59_9BURK7.920e-6549.09Flagellar brake protein n=1 Tax=Burkholderiales ba... [more]
A0A7Z9PYB8_9BACT1.870e-5548.23Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9122contigP-wetherbeei_contig9122:250..939 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size690
Hectar predicted targeting categoryother localisation
Exons1
Cds size690
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187077.1136308-CDS-P-wetherbeei_contig9122:249..9391683187077.1136308-CDS-P-wetherbeei_contig9122:249..939Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9122 250..939 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9122.1.1prot_P-wetherbeei_contig9122.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9122 250..939 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9122.1.1

>prot_P-wetherbeei_contig9122.1.1 ID=prot_P-wetherbeei_contig9122.1.1|Name=mRNA_P-wetherbeei_contig9122.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=230bp
LFGGGKKKKSPFKLTARQEVEVEFEAGDGVYESHFVTVQDVQKKKIVIAA
PGSDRKPVRLVPGQRVTVSVLTDDTHLSYEASVNDVQDREIELSYPPKDH
EEVTLPARDDSFQVKVPIPVEFRAMSTAHTQVANTHAVTLNGLFLTTNLP
IPPNTSLLMELEIPNAPDITAKGRAVTSQEDTSTGRKRFITEVEYEDVSE
KDRNTIIRYALFYQQRQTRNEKRLTESSK*
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mRNA from alignment at P-wetherbeei_contig9122:250..939+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9122.1.1 ID=mRNA_P-wetherbeei_contig9122.1.1|Name=mRNA_P-wetherbeei_contig9122.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=690bp|location=Sequence derived from alignment at P-wetherbeei_contig9122:250..939+ (Phaeothamnion wetherbeei SAG_119_79)
TTATTCGGAGGCGGCAAGAAAAAGAAATCGCCTTTTAAACTCACCGCTCG
CCAAGAGGTCGAGGTTGAGTTTGAAGCCGGTGACGGCGTCTACGAAAGCC
ATTTCGTAACGGTCCAGGATGTTCAGAAGAAGAAAATCGTCATCGCAGCC
CCCGGCAGCGATCGCAAGCCGGTTCGACTCGTTCCCGGCCAGCGCGTGAC
GGTCTCGGTCCTCACCGACGACACGCATCTCAGCTACGAAGCTTCGGTCA
ACGACGTTCAGGATCGCGAGATCGAGCTTAGCTATCCGCCTAAGGATCAC
GAAGAGGTCACCCTCCCCGCTCGTGACGACAGCTTTCAGGTCAAGGTTCC
CATCCCCGTCGAGTTCCGCGCGATGAGCACTGCTCACACGCAGGTCGCCA
ACACGCATGCGGTCACCCTCAACGGACTCTTTCTGACCACCAATCTTCCC
ATCCCCCCCAACACCTCTCTGCTGATGGAGCTCGAGATACCCAACGCTCC
CGACATCACGGCCAAAGGCCGCGCCGTCACCAGCCAGGAGGACACTTCGA
CCGGACGTAAGCGCTTCATCACCGAAGTCGAGTATGAAGACGTGTCCGAA
AAAGATCGCAACACAATCATCCGTTACGCGCTCTTCTACCAGCAGCGCCA
GACGCGCAACGAGAAAAGACTGACCGAGTCCAGCAAGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9122:250..939+

>mRNA_P-wetherbeei_contig9122.1.1 ID=mRNA_P-wetherbeei_contig9122.1.1|Name=mRNA_P-wetherbeei_contig9122.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=690bp|location=Sequence derived from alignment at P-wetherbeei_contig9122:250..939+ (Phaeothamnion wetherbeei SAG_119_79)
TTATTCGGAGGCGGCAAGAAAAAGAAATCGCCTTTTAAACTCACCGCTCG
CCAAGAGGTCGAGGTTGAGTTTGAAGCCGGTGACGGCGTCTACGAAAGCC
ATTTCGTAACGGTCCAGGATGTTCAGAAGAAGAAAATCGTCATCGCAGCC
CCCGGCAGCGATCGCAAGCCGGTTCGACTCGTTCCCGGCCAGCGCGTGAC
GGTCTCGGTCCTCACCGACGACACGCATCTCAGCTACGAAGCTTCGGTCA
ACGACGTTCAGGATCGCGAGATCGAGCTTAGCTATCCGCCTAAGGATCAC
GAAGAGGTCACCCTCCCCGCTCGTGACGACAGCTTTCAGGTCAAGGTTCC
CATCCCCGTCGAGTTCCGCGCGATGAGCACTGCTCACACGCAGGTCGCCA
ACACGCATGCGGTCACCCTCAACGGACTCTTTCTGACCACCAATCTTCCC
ATCCCCCCCAACACCTCTCTGCTGATGGAGCTCGAGATACCCAACGCTCC
CGACATCACGGCCAAAGGCCGCGCCGTCACCAGCCAGGAGGACACTTCGA
CCGGACGTAAGCGCTTCATCACCGAAGTCGAGTATGAAGACGTGTCCGAA
AAAGATCGCAACACAATCATCCGTTACGCGCTCTTCTACCAGCAGCGCCA
GACGCGCAACGAGAAAAGACTGACCGAGTCCAGCAAGTAA
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