mRNA_P-wetherbeei_contig9119.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9119.2.1
Unique NamemRNA_P-wetherbeei_contig9119.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9119.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9119contigP-wetherbeei_contig9119:1154..2622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G573
PFAMsHD_4,RelA_SpoT
Model size990
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00078
KEGG koko:K00951
KEGG ReactionR00429
KEGG Pathwayko00230,map00230
Hectar predicted targeting categoryother localisation
Exons4
Evalue5.39e-22
EggNOG OGsCOG0317@1|root,KOG1157@2759|Eukaryota
Ec32 ortholog descriptionGTP diphosphokinase
Ec32 orthologEc-14_006460.1
EC2.7.6.5
DescriptionHD domain containing 3
Cds size990
COG categoryKT
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187076.913676-CDS-P-wetherbeei_contig9119:1153..13511683187076.913676-CDS-P-wetherbeei_contig9119:1153..1351Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9119 1154..1351 +
1683187076.939028-CDS-P-wetherbeei_contig9119:1545..19661683187076.939028-CDS-P-wetherbeei_contig9119:1545..1966Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9119 1546..1966 +
1683187076.9514508-CDS-P-wetherbeei_contig9119:2146..22941683187076.9514508-CDS-P-wetherbeei_contig9119:2146..2294Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9119 2147..2294 +
1683187076.9701314-CDS-P-wetherbeei_contig9119:2399..26221683187076.9701314-CDS-P-wetherbeei_contig9119:2399..2622Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9119 2400..2622 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9119.2.1prot_P-wetherbeei_contig9119.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9119 1154..2622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9119.2.1

>prot_P-wetherbeei_contig9119.2.1 ID=prot_P-wetherbeei_contig9119.2.1|Name=mRNA_P-wetherbeei_contig9119.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=330bp
MWSSLTATGRLNYLSEGAQSRVRLALVTLAAHAALSERSSAPITSPTGQL
FAEMDVNGDGSVDFDEFVKWYDAPIKVSPTRPMLAPALDEAAALSPTEQD
TESNAVAADAATRIPPARTGTAAAASAVAAAAAAASVQAASAAPESGLLA
GGASWPNLLADAHLVGSVLFKGAGAGQMAPDEAERRREAWLASGSRSFDG
GGSGAGGPRRSVAADLERAMQVADVLVGASADADTLVAALASEAMRLPGI
GNTGSGGDGGGGYDLDAIGEQFGPVVRAIAEDRGLLQRLARPAAAAESLR
ALQASPSGLRAVRDLDDRDAKLLREYLLHA
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mRNA from alignment at P-wetherbeei_contig9119:1154..2622+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9119.2.1 ID=mRNA_P-wetherbeei_contig9119.2.1|Name=mRNA_P-wetherbeei_contig9119.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1469bp|location=Sequence derived from alignment at P-wetherbeei_contig9119:1154..2622+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTGGTCGAGTCTCACTGCCACCGGGCGCTTGAATTATCTCAGTGAGGG
GGCACAATCTCGAGTGCGACTTGCTCTCGTCACCTTGGCCGCACACGCGG
CGCTCTCGGAACGCAGCAGTGCGCCTATCACCAGTCCAACGGGGCAGCTC
TTTGCGGAGATGGATGTGAACGGCGACGGAAGCGTTGACTTTGATGAGGT
GAGCTGATTGTCCTTGCATGTGTGTCGTGATCTGCTGACGGATCGATCTT
TTTGCCTACTTTAAGAGCTTTTCTTCATAGCAGTTCATAAAGAAAGTGGA
ACAGACGTTTCCTTGCGAAATTGGTGTTTGTGGTCAATATAGGCGCACTA
AGGTTTGAATCAAACCGTGACTTCAACCGTTCTTTACAATAGTTTGTCAA
GTGGTACGACGCCCCGATCAAGGTGTCGCCGACGCGGCCCATGCTTGCTC
CCGCCCTCGACGAAGCGGCGGCTTTATCACCAACCGAGCAAGACACCGAG
AGCAACGCTGTGGCAGCGGACGCGGCAACGCGAATACCACCAGCCAGAAC
AGGGACGGCGGCGGCGGCATCGGCGGTAGCGGCTGCGGCGGCAGCGGCGT
CGGTGCAGGCGGCGTCGGCGGCTCCAGAGAGCGGGCTGCTGGCAGGGGGA
GCGTCGTGGCCGAATCTTCTCGCGGATGCGCACCTGGTGGGCTCAGTCCT
TTTCAAAGGCGCCGGCGCCGGTCAAATGGCCCCGGATGAGGCCGAACGCC
GTCGGGAAGCGTGGCTGGCCTCGGGCAGCCGCAGCTTCGACGGCGGCGGG
AGCGGCGCCGGCGGTGGTTACGGCGGTTACGGTGGTGCCATTAACGGCGG
TTCCGCCAACCCTCGCGCGTACGATCACAACCCTCCTGCCGCCGGATATG
CGGGCGATGTCTACGGCAGCGGCAGAGACATCGTTGCGTACCGTGCGGCG
GCTGCGGCGGCGGCGCAGACACCAGAGAGACGAGCCGTCGCAGGGCCACG
CCGTAGCGTGGCGGCGGATCTGGAGCGGGCAATGCAGGTAGCGGACGTGC
TTGTCGGGGCATCCGCAGACGCAGACACTCTTGTGGCGGCGCTGGCTTCC
GAGGCGATGCGCCTGCCGGGCATTGGCAACACCGGCAGCGGGTATGGGGA
CCACAGCAGTTACGCGGATGCCAGCACCGGTTACCACAGCGAATCCGGGT
ACCGCGAAGACGGCGACAATCACTATTACTCCGGTGGCGGCGACAGCGGC
GATGGCGGCGGTGGCTACGATTTGGATGCCATCGGGGAGCAGTTCGGTCC
CGTCGTGCGTGCCATCGCAGAGGACCGCGGGTTGTTGCAGCGGCTGGCGC
GCCCGGCCGCCGCCGCCGAGTCGCTGCGGGCGCTGCAGGCGTCGCCGTCC
GGCCTGCGGGCGGTGCGCGACCTGGATGACCGCGACGCCAAGCTGCTGCG
CGAGTACCTGCTGCACGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9119:1154..2622+

>mRNA_P-wetherbeei_contig9119.2.1 ID=mRNA_P-wetherbeei_contig9119.2.1|Name=mRNA_P-wetherbeei_contig9119.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=990bp|location=Sequence derived from alignment at P-wetherbeei_contig9119:1154..2622+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTGGTCGAGTCTCACTGCCACCGGGCGCTTGAATTATCTCAGTGAGGG
GGCACAATCTCGAGTGCGACTTGCTCTCGTCACCTTGGCCGCACACGCGG
CGCTCTCGGAACGCAGCAGTGCGCCTATCACCAGTCCAACGGGGCAGCTC
TTTGCGGAGATGGATGTGAACGGCGACGGAAGCGTTGACTTTGATGAGTT
TGTCAAGTGGTACGACGCCCCGATCAAGGTGTCGCCGACGCGGCCCATGC
TTGCTCCCGCCCTCGACGAAGCGGCGGCTTTATCACCAACCGAGCAAGAC
ACCGAGAGCAACGCTGTGGCAGCGGACGCGGCAACGCGAATACCACCAGC
CAGAACAGGGACGGCGGCGGCGGCATCGGCGGTAGCGGCTGCGGCGGCAG
CGGCGTCGGTGCAGGCGGCGTCGGCGGCTCCAGAGAGCGGGCTGCTGGCA
GGGGGAGCGTCGTGGCCGAATCTTCTCGCGGATGCGCACCTGGTGGGCTC
AGTCCTTTTCAAAGGCGCCGGCGCCGGTCAAATGGCCCCGGATGAGGCCG
AACGCCGTCGGGAAGCGTGGCTGGCCTCGGGCAGCCGCAGCTTCGACGGC
GGCGGGAGCGGCGCCGGCGGGCCACGCCGTAGCGTGGCGGCGGATCTGGA
GCGGGCAATGCAGGTAGCGGACGTGCTTGTCGGGGCATCCGCAGACGCAG
ACACTCTTGTGGCGGCGCTGGCTTCCGAGGCGATGCGCCTGCCGGGCATT
GGCAACACCGGCAGCGGCGGCGATGGCGGCGGTGGCTACGATTTGGATGC
CATCGGGGAGCAGTTCGGTCCCGTCGTGCGTGCCATCGCAGAGGACCGCG
GGTTGTTGCAGCGGCTGGCGCGCCCGGCCGCCGCCGCCGAGTCGCTGCGG
GCGCTGCAGGCGTCGCCGTCCGGCCTGCGGGCGGTGCGCGACCTGGATGA
CCGCGACGCCAAGCTGCTGCGCGAGTACCTGCTGCACGCC
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