mRNA_P-wetherbeei_contig9103.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9103.1.1
Unique NamemRNA_P-wetherbeei_contig9103.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig9103.1.1 vs. uniprot
Match: A0A813JZV9_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JZV9_POLGL)

HSP 1 Score: 52.0 bits (123), Expect = 5.370e-7
Identity = 24/49 (48.98%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:   10 MLTLLGLEMYLPAFHKEGFEFDAVLLCEESDFAEVGLKKGHRMKLLRAV 156
            ++  +GLE ++PAF  E  + DA+ L EE D  ++GL KG R+KLLRAV
Sbjct:    4 LMQQIGLERFIPAFQAEEVDLDALSLFEEKDLQDLGLPKGPRVKLLRAV 52
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BLAST of mRNA_P-wetherbeei_contig9103.1.1 vs. uniprot
Match: A0A813KCP2_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KCP2_POLGL)

HSP 1 Score: 51.2 bits (121), Expect = 5.000e-6
Identity = 24/45 (53.33%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:   22 LGLEMYLPAFHKEGFEFDAVLLCEESDFAEVGLKKGHRMKLLRAV 156
            +GLE ++PAF  E  + DA+ L EE D  ++GL KG R+KLLRAV
Sbjct:    1 IGLERFIPAFQAEEVDLDALSLFEEKDLQDLGLPKGPRVKLLRAV 45
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BLAST of mRNA_P-wetherbeei_contig9103.1.1 vs. uniprot
Match: A0A1X7U136_AMPQE (SAM domain-containing protein n=3 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7U136_AMPQE)

HSP 1 Score: 48.5 bits (114), Expect = 4.720e-5
Identity = 25/52 (48.08%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:    1 LAEMLTLLGLEMYLPAFHKEGFEFDAVLLCEESDFAEVGLKKGHRMKLLRAV 156
            L+ +L  LGL  Y   F K   +  A+LL  E DFAEVG+ KG R+KLL A+
Sbjct: 2689 LSGLLDKLGLSKYHNLFQKNEIDHHALLLMSEKDFAEVGIPKGPRVKLLNAI 2740
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9103.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A813JZV9_POLGL5.370e-748.98Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
A0A813KCP2_POLGL5.000e-653.33Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A1X7U136_AMPQE4.720e-548.08SAM domain-containing protein n=3 Tax=Amphimedon q... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9103contigP-wetherbeei_contig9103:61..228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog293227.XP_008719409.1
PFAMsHMG_box,SAM_1
Model size168
Max annot lvl4751|Fungi
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue6.79e-09
EggNOG OGsCOG5648@1|root,KOG0381@2759|Eukaryota,38DGI@33154|Opisthokonta,3P2G5@4751|Fungi,3QSY1@4890|Ascomycota,20GIE@147545|Eurotiomycetes,3MQWE@451870|Chaetothyriomycetidae
DescriptionSAM domain (Sterile alpha motif)
Cds size159
COG categoryK
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187076.1016421-UTR-P-wetherbeei_contig9103:60..691683187076.1016421-UTR-P-wetherbeei_contig9103:60..69Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9103 61..69 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187076.1126692-CDS-P-wetherbeei_contig9103:69..2281683187076.1126692-CDS-P-wetherbeei_contig9103:69..228Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9103 70..228 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9103.1.1prot_P-wetherbeei_contig9103.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9103 70..228 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9103.1.1

>prot_P-wetherbeei_contig9103.1.1 ID=prot_P-wetherbeei_contig9103.1.1|Name=mRNA_P-wetherbeei_contig9103.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=53bp
MLTLLGLEMYLPAFHKEGFEFDAVLLCEESDFAEVGLKKGHRMKLLRAVS
EYK
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mRNA from alignment at P-wetherbeei_contig9103:61..228+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9103.1.1 ID=mRNA_P-wetherbeei_contig9103.1.1|Name=mRNA_P-wetherbeei_contig9103.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=168bp|location=Sequence derived from alignment at P-wetherbeei_contig9103:61..228+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGCGGAGATGCTGACGTTGCTGGGGCTCGAAATGTACCTGCCGGCCTT
TCACAAGGAGGGCTTCGAGTTCGACGCCGTGCTGCTCTGCGAAGAGTCGG
ACTTTGCCGAGGTCGGCCTCAAAAAGGGCCACCGCATGAAGCTGCTGCGC
GCCGTCTCGGAATACAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9103:61..228+

>mRNA_P-wetherbeei_contig9103.1.1 ID=mRNA_P-wetherbeei_contig9103.1.1|Name=mRNA_P-wetherbeei_contig9103.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=159bp|location=Sequence derived from alignment at P-wetherbeei_contig9103:61..228+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGACGTTGCTGGGGCTCGAAATGTACCTGCCGGCCTTTCACAAGGA
GGGCTTCGAGTTCGACGCCGTGCTGCTCTGCGAAGAGTCGGACTTTGCCG
AGGTCGGCCTCAAAAAGGGCCACCGCATGAAGCTGCTGCGCGCCGTCTCG
GAATACAAG
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