mRNA_P-wetherbeei_contig910.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig910.2.1
Unique NamemRNA_P-wetherbeei_contig910.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig910.2.1 vs. uniprot
Match: A0A4D9DDS9_9STRA (EF-hand domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DDS9_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 4.470e-14
Identity = 33/62 (53.23%), Postives = 47/62 (75.81%), Query Frame = 2 
Query:  245 FKLPDQNNDNLINRNEFDAYMRKYKQMHPQLREIDLPRFGDMDHDGSGVISFPEWEQYMAQV 430
            FKLPD NNDN I+R EF+AY+R Y   HP+L +++ P F D D DGSG++SF EW+Q++ ++
Sbjct:  148 FKLPDANNDNKISRAEFEAYLRSYFAAHPELADVEYPSFDDFDLDGSGLVSFAEWKQFIEEL 209
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BLAST of mRNA_P-wetherbeei_contig910.2.1 vs. uniprot
Match: A0A835YSS0_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSS0_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 6.620e-14
Identity = 39/84 (46.43%), Postives = 55/84 (65.48%), Query Frame = 2 
Query:  179 IKSYKHKLEQTLNEIDYLEQKLFKLPDQNNDNLINRNEFDAYMRKYKQMHPQLREIDLPRFGDMDHDGSGVISFPEWEQYMAQV 430
            I   K  L+ TL      E++L+ LPD+N D  I+R EFD YM +YK+MH +LR+ DLPR+ +MD D +G I+F EW  YM ++
Sbjct:   58 IAENKRMLDSTLEVAREWEKRLYALPDRNADGRISRPEFDDYMARYKRMHTELRDPDLPRWEEMDTDRTGFITFQEWLDYMDRI 141
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BLAST of mRNA_P-wetherbeei_contig910.2.1 vs. uniprot
Match: A0A482SNT9_9ARCH (EF-hand domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SNT9_9ARCH)

HSP 1 Score: 78.2 bits (191), Expect = 8.060e-14
Identity = 42/98 (42.86%), Postives = 62/98 (63.27%), Query Frame = 2 
Query:  134 LQRQVEEHMEAYDAAIKSYKHKLEQTLNEIDYLEQKLFKLPDQNNDNLINRNEFDAYMRKYKQMHPQLREIDLPRFGDMDHDGSGVISFPEWEQYMAQ 427
            LQ++ E+  + Y    K+Y+  LE+   E DY E   FK PD NND++I+R EF+AY+ KY    P+L E D P+F D D D  G++SF EW++++ Q
Sbjct:   30 LQQRDEKWRKEYMRVYKAYEE-LEKETVERDYEE---FKAPDTNNDDMISRAEFNAYVTKYLSSFPELSEADFPKFDDFDQDEDGLVSFDEWQKFLVQ 123
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig910.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A4D9DDS9_9STRA4.470e-1453.23EF-hand domain-containing protein n=2 Tax=Monodops... [more]
A0A835YSS0_9STRA6.620e-1446.43EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
A0A482SNT9_9ARCH8.060e-1442.86EF-hand domain-containing protein n=1 Tax=archaeon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig910contigP-wetherbeei_contig910:422..2131 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FR63
PFAMsEF-hand_5
Model size907
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue9.5e-12
EggNOG OGs2E463@1|root,2SB4A@2759|Eukaryota
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-24_002230.1
DescriptionEF-hand domain pair
Cds size357
COG categoryZ
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187075.9296494-UTR-P-wetherbeei_contig910:421..5091683187075.9296494-UTR-P-wetherbeei_contig910:421..509Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig910 422..509 +
1683187075.9743633-UTR-P-wetherbeei_contig910:1669..21311683187075.9743633-UTR-P-wetherbeei_contig910:1669..2131Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig910 1670..2131 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187075.9418054-CDS-P-wetherbeei_contig910:509..6051683187075.9418054-CDS-P-wetherbeei_contig910:509..605Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig910 510..605 +
1683187075.953013-CDS-P-wetherbeei_contig910:1135..12431683187075.953013-CDS-P-wetherbeei_contig910:1135..1243Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig910 1136..1243 +
1683187075.963509-CDS-P-wetherbeei_contig910:1516..16691683187075.963509-CDS-P-wetherbeei_contig910:1516..1669Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig910 1517..1669 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig910.2.1prot_P-wetherbeei_contig910.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig910 510..1669 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig910.2.1

>prot_P-wetherbeei_contig910.2.1 ID=prot_P-wetherbeei_contig910.2.1|Name=mRNA_P-wetherbeei_contig910.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=119bp
MRKKHQAKYAAQNARLQRQVEEHMEAYDAAIKSYKHKLEQTLNEIDYLEQ
KLFKLPDQNNDNLINRNEFDAYMRKYKQMHPQLREIDLPRFGDMDHDGSG
VISFPEWEQYMAQVLGGQ*
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mRNA from alignment at P-wetherbeei_contig910:422..2131+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig910.2.1 ID=mRNA_P-wetherbeei_contig910.2.1|Name=mRNA_P-wetherbeei_contig910.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1710bp|location=Sequence derived from alignment at P-wetherbeei_contig910:422..2131+ (Phaeothamnion wetherbeei SAG_119_79)
GCGAGGAGGGATCCTGGGACCGCTGGTAACGGCGGTGTCGACGTTTGTTG
GGGCGAAGGTTCTGTTTGGGCGGAACCGCGCGACCAAGATGCGCAAGAAG
CACCAGGCCAAGTACGCCGCCCAAAACGCACGGCTGCAGCGGCAGGTGGA
GGAGCACATGGAAGCCTACGATGCCGCCATCAAGGTTAGTCGAGTCAGAC
GATCTCGGTCGGTCTTGATTGGATTCGGTCGGTCACATTACGCAGCGTTT
GTCGGTTCGGTCGGTTCGTTTCAATCTGGGCGAGACGAATATGGCTTCCG
TCGGGCTGCTCGTGGGAGCGAATGAGCATGTTGTCGAGGACCGACTGGCT
GCGCGTCGTTCGGGAACGCTCGGGTTTTGCTTTGGGGTCTGTCGCCGCCA
TGCTTCTTTAGCTCAATGCAGCGATGGCGTTGTTGCTGTTGGTTTGTGTG
CGTCCATTTGCAACTGTTTCCGACCATCCTCGGACGCCAGTGGACTCCGC
ACGTTAGTCCGCTTCTGCAGTTCAAGAGCGCTGTTCCGATGGTTTGCTCC
GGTTGTCTCCCCTTTCGCTTCTCACCCCCCCTGCCGCCGCCCCTGCCACT
CCCTCTCCTCGTTATTATTCCTCGATTCTCTCTGGTTGCGCGGACTGGTT
TGTACCTCGCCCCCCAACTCGACCAATCGCTGGTCGCCGGCCGTCCGAAC
CGGTGGTCCGTCAGTCGTACAAGCACAAACTGGAACAGACGTTGAATGAG
ATTGATTATTTGGAGCAGAAGCTCTTCAAGCTGCCCGACCAGAACAACGA
CAACCTCATCAACCGAAACGAGGTGGGTATAGATCTATTTTGTCTAGGTT
TGGAGGCCAGAGCTTCGATTTGAAGCCTCATTATCTCATTTATCGTCCCA
GTGCGTCGGTGCTAGACCATCTCTTATTTAAAGATAAGCTTCTAGTTATC
GTGTAATTCTTCCCTCTTTCACGAGGTCATTTTCAAGGTGAACAAGTCCT
ACCCCGGCTTTCCTCTGTTCCTAAAATTCTTCATAGCGTTTCTTTCTTCG
CGCGGCCTTCTCCGTTTGCTTCCCTTTTCTTCCCGGAGTTCTCAGTTCGA
CGCGTACATGCGCAAGTACAAGCAGATGCATCCGCAGCTGCGGGAGATCG
ACCTGCCGCGGTTCGGCGACATGGACCACGACGGCTCGGGGGTCATCAGC
TTCCCCGAGTGGGAGCAGTACATGGCCCAGGTCCTCGGGGGGCAGTAGTA
GAAGACGGCAGAAAAGAAATAGGGAGGGGAGGAAGGAACGAGGGTGGAAG
GGTTCGGTGCGGGTTGGAAGGGGTTGGAAGGGAGGGGTTTGAGAAGGGCT
CCCGGGGCGCGTCACTACTGTCAGGACCATGAGGCGGGGAAGGAGAATTG
CCGGAACAGCCACCATGGCTTCTTCTCTCGGCGGTTGGGCGGCCGCCTTC
TCCGCGCACACGCCAGGGCTGGTTAAGGTTAGAAGAATTGTCTATGGTAA
ACTCTTTTGCTTGGCTCCTCGTTCATGAACTCTTTCGTGGAAGCTACTGT
TTTCCCGATGGGGGAGCTCGCCGTCTTCCCAGCATTCCCCTGTTTTTCCC
CCCTGTTTGGCAAGGGCGACAATCTTATACCGGGGCGCAATTTCAATTCG
TCGTAAAGAGATGTCGGCCAGGATTCAAATTTGCCAGGTGTAAATCATAT
TTTCAAAGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig910:422..2131+

>mRNA_P-wetherbeei_contig910.2.1 ID=mRNA_P-wetherbeei_contig910.2.1|Name=mRNA_P-wetherbeei_contig910.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=357bp|location=Sequence derived from alignment at P-wetherbeei_contig910:422..2131+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCAAGAAGCACCAGGCCAAGTACGCCGCCCAAAACGCACGGCTGCA
GCGGCAGGTGGAGGAGCACATGGAAGCCTACGATGCCGCCATCAAGTCGT
ACAAGCACAAACTGGAACAGACGTTGAATGAGATTGATTATTTGGAGCAG
AAGCTCTTCAAGCTGCCCGACCAGAACAACGACAACCTCATCAACCGAAA
CGAGTTCGACGCGTACATGCGCAAGTACAAGCAGATGCATCCGCAGCTGC
GGGAGATCGACCTGCCGCGGTTCGGCGACATGGACCACGACGGCTCGGGG
GTCATCAGCTTCCCCGAGTGGGAGCAGTACATGGCCCAGGTCCTCGGGGG
GCAGTAG
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