mRNA_P-wetherbeei_contig903.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig903.1.1
Unique NamemRNA_P-wetherbeei_contig903.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig903.1.1 vs. uniprot
Match: D8LHJ6_ECTSI (tRNA (Guanine-n(7)-)-methyltransferase complex subunit, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHJ6_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 1.740e-25
Identity = 73/170 (42.94%), Postives = 101/170 (59.41%), Query Frame = 1
Query:    1 AATGCLIASTTRPKRCTRLLFAPAFS--LDESATARR----VLIVADKFGDVWSWVPSGNQSSAASLEGRHLLGHTSATITCMATTHDGRLLLTGDRVERVRVSHFPNTCLIKSYLLRHTDFVAAVTAVSPPATLGRVSAPTLVATAGGDGMVGLWDASTGDLLSWLDVR 492
            AA+G ++     PK+ T +LFAP  +   D +A  R     V++V+DK GD ++  P  + SSA     +HLLGHT+ TIT M T   G+LL T DR E +RVS FP T ++ +YLL H DFV+A+ AV  P   G     T++ + GGDG VGLW+A  G  L+ + VR
Sbjct:   51 AASGHVLGKRELPKKPTSVLFAPVVAPRADGAAATREKTEEVVVVSDKCGDAYA-APLPDPSSAL----KHLLGHTAMTITAMVTLKRGQLLATADRAEHIRVSQFPRTTIVHTYLLGHQDFVSALAAV--PGEGG-----TMLLSGGGDGRVGLWEAEAGRELAMISVR 208          
BLAST of mRNA_P-wetherbeei_contig903.1.1 vs. uniprot
Match: A0A6H5KN97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN97_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 6.820e-25
Identity = 74/170 (43.53%), Postives = 98/170 (57.65%), Query Frame = 1
Query:    1 AATGCLIASTTRPKRCTRLLFAPAF--SLDESATARR----VLIVADKFGDVWSWVPSGNQSSAASLEGRHLLGHTSATITCMATTHDGRLLLTGDRVERVRVSHFPNTCLIKSYLLRHTDFVAAVTAVSPPATLGRVSAPTLVATAGGDGMVGLWDASTGDLLSWLDVR 492
            A +G L+     PK+ T +LFAP      D +A  R     V++V+DK GD ++  P  + SSA     +HLLGHT+ TIT M T   G+LL T DR E VRVS FP T ++ +YLL H DFV+A+ AV  P   G      ++ + GGDG VGLWDA  G  L+ + VR
Sbjct:  146 AESGHLLGRRELPKKPTSILFAPVVVPRADGAAATREKTQEVVVVSDKCGDAYA-APLPDPSSAL----KHLLGHTAMTITAMVTLKGGQLLATADRAEHVRVSQFPRTTIVHTYLLGHQDFVSALAAV--PGEGGA-----MLLSGGGDGRVGLWDAEAGRELAMISVR 303          
BLAST of mRNA_P-wetherbeei_contig903.1.1 vs. uniprot
Match: A0A0L0SCE7_ALLM3 (tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit TRM82 n=2 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0SCE7_ALLM3)

HSP 1 Score: 81.3 bits (199), Expect = 4.300e-15
Identity = 53/130 (40.77%), Postives = 72/130 (55.38%), Query Frame = 1
Query:  109 LIVADKFGDVWSWV--PSGNQSSAASLEGRHLLGHTSATITCMATTHDGRLLLTGDRVERVRVSHFPNTCLIKSYLLRHTDFVAAVTAVSPPATLGRVSAPTLVATAGGDGMVGLWDASTGDLLSWLDVR 492
            L+ ADK GDVW++   P+   S      G  ++GH S  +TC        L++TGDR E VRVS FP+  +I+++ L HT FVA +T V             L+A+AGGD  V LWD  TG LL+  D+R
Sbjct:  108 LVCADKHGDVWTFPLEPATPPSKKPGDGGSIIVGHVSM-VTCAKLAAQDSLIVTGDRDEHVRVSRFPDGHVIETFCLGHTQFVAHLTVVDEE---------RLLASAGGDDFVALWDYRTGQLLARGDLR 227          
BLAST of mRNA_P-wetherbeei_contig903.1.1 vs. uniprot
Match: W7TCQ7_9STRA (Trna (Guanine-n7-)-methyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TCQ7_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.070e-13
Identity = 59/157 (37.58%), Postives = 80/157 (50.96%), Query Frame = 1
Query:   16 LIASTTRPKRCTRLLFA----PAFSLD---ESATARRVLIVADKFGDVWSWVPSGNQSSAASLEGRHLLGHTSATITCMATTHDGRLLLTGDRVERVRVSHFPNTCLIKSYLLRHTDFVAAVTAVSPPATLGRVSAPTLVATAGGDGMVGLWDASTG 465
            L++    PK+   LLFA    P+   D    +     V++V DK GDV  +  +       S     LLGHT++  TC+  + DG  L TGDR E+VR+SHFP T +I++YLL H  FV++V  V   A          V T  GD  + LWDA TG
Sbjct:   98 LLSHRLLPKKAFALLFARLDSPSGDQDLGPGTGHQEDVVLVNDKVGDVRMYRATAEMLPKTSA---FLLGHTASVGTCLDLSPDGARLATGDRDEKVRISHFPCTVVIETYLLGHERFVSSVNFVENGAK---------VLTGSGDQTLALWDAHTG 242          
BLAST of mRNA_P-wetherbeei_contig903.1.1 vs. uniprot
Match: A0A642UGM3_DIURU (tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit TRM82 n=1 Tax=Diutina rugosa TaxID=5481 RepID=A0A642UGM3_DIURU)

HSP 1 Score: 73.6 bits (179), Expect = 2.610e-12
Identity = 54/153 (35.29%), Postives = 81/153 (52.94%), Query Frame = 1
Query:   34 RPKRCTRLLFAPAFSLDESATARRVLIVADKFGDVWSWVPSGNQSSAASLEGRHLLGHTSATITCMATTHDGR-LLLTGDRVERVRVSHFPNTCLIKSYLLRHTDFVAAVTAVSPPATLGRVSAPTLVATAGGDGMVGLWDASTGDLLSWLDV 489
            R + C +   A AF  D        ++VADKFGDV+  V    +  A   +   +LGH S   + +   HDG+  ++TGDR E VRVSH+P + +IK +L  H++FVAA+            S P L+ +AGGD  V +W     +L++ +DV
Sbjct:  109 RRQPCPKRPSAGAFVTDNE------VVVADKFGDVY--VVDSGKEIADPKKMEPVLGHVSLLNSVVMAEHDGKKYIITGDRDEHVRVSHYPQSFVIKHWLFGHSEFVAALHIPQ--------SNPELLFSAGGDDYVCVWKWFDNELVTKIDV 245          
BLAST of mRNA_P-wetherbeei_contig903.1.1 vs. uniprot
Match: A0A8K1C303_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C303_PYTOL)

HSP 1 Score: 72.0 bits (175), Expect = 9.960e-12
Identity = 51/133 (38.35%), Postives = 71/133 (53.38%), Query Frame = 1
Query:   76 SLDESATARRVLIVADKFGDVWSW-VPSGNQSSAASLEGRHLLGHTSATITCMATTHDGRLLLTGDRVERVRVSHFPNTCLIKSYLLRHTDFVAAVTAVSPPATLGRVSAPTLVATAGGDGMVGLWDASTGDL 471
            SL  +   + V+IV +K G+  +   P  N+        R LLGHT++ IT MA  HD  LLLT DR E++R+SHFP T L++SY L H    A+VT ++  A       P LV +   D  + LW+   G L
Sbjct:  130 SLRVNEETKHVVIVGEKTGEAVAMPFPHLNRDL------RTLLGHTTSMITHMAVNHDRSLLLTADRDEKIRISHFPRTSLVQSYCLGHK---ASVTRIATSAVT-----PQLVVSTSLDNSIKLWNVEDGTL 248          
BLAST of mRNA_P-wetherbeei_contig903.1.1 vs. uniprot
Match: A0A8J9RH72_9CHLO (Probable tRNA (Guanine-N(7)-)-methyltransferase non-catalytic subunit at N-terminal half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RH72_9CHLO)

HSP 1 Score: 71.6 bits (174), Expect = 1.510e-11
Identity = 56/131 (42.75%), Postives = 72/131 (54.96%), Query Frame = 1
Query:  112 IVADKFGDVWSWVPSGNQSSAASLEGRHLLGHTSATITCMATTHDGRLLLTGDRVERVRVSHFPNTCL-----IKSYLLRHTDFVAAVTAVSPPATLGRVSAPTLVATAGGDGMVGLWDASTGDLLSWLDV 489
            I ADKFGDV   V +  +S+      R LLGH  + IT +A + DG+ L++ DR  +VRVS  P   L     I+SY L HT FV A   V+        S  TL+A+AGGDG V LWD  +G+LL    V
Sbjct:  133 IFADKFGDVH--VAATAESAIGGP--RPLLGHFCSIITDLAASPDGKYLVSTDRDSKVRVSMLPKEPLQGAHEIQSYCLGHTSFVTACAFVT-------TSDCTLLASAGGDGTVRLWDHVSGELLDTCQV 252          
BLAST of mRNA_P-wetherbeei_contig903.1.1 vs. uniprot
Match: A0A7J7JZ76_BUGNE (tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JZ76_BUGNE)

HSP 1 Score: 71.2 bits (173), Expect = 1.720e-11
Identity = 55/162 (33.95%), Postives = 85/162 (52.47%), Query Frame = 1
Query:    7 TGC-----LIASTTRPKRCTRLLFAPAFSLDESATARRVLIVADKFGDVWSWVPSGNQSSAASLEGRHLLGHTSATITCMATTHDGRLLLTGDRVERVRVSHFPNTCLIKSYLLRHTDFVAAVTAVSPPATLGRVSAPTLVATAGGDGMVGLWDASTGDLLS 477
            TGC     LI+S +  K+  +L     F  D+S      +++ADKFGDV S+     +      EG  +LGH S  + C+   HDG+ L++ DR E++RV+H+PNT  I+++ L HT +V ++ A           A   + +A  D  V LW+  TG +LS
Sbjct:   83 TGCPSDYTLISSRSTAKKAVKL----EFLQDDSE-----VLMADKFGDVTSFSVLKPEK-----EGDVILGHLSMLLDCILI-HDGKYLVSADRDEKIRVTHYPNTYNIQAFCLGHTSYVTSLAA-----------AEEWLVSASADSSVKLWNPVTGTMLS 218          
BLAST of mRNA_P-wetherbeei_contig903.1.1 vs. uniprot
Match: A7S5I5_NEMVE (Predicted protein (Fragment) n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7S5I5_NEMVE)

HSP 1 Score: 69.7 bits (169), Expect = 2.600e-11
Identity = 43/122 (35.25%), Postives = 67/122 (54.92%), Query Frame = 1
Query:  109 LIVADKFGDVWSWVPSGNQSSAASLEGRHLLGHTSATITCMATTHDGRLLLTGDRVERVRVSHFPNTCLIKSYLLRHTDFVAAVTAVSPPATLGRVSAPTLVATAGGDGMVGLWDASTGDLL 474
            +I+ADK GDV+ +    + +  + L     LGH S  I  M  T D + ++T DR E++RVSH+PN+  I+++ L+H DFV+ +  ++    L         A+ GGDG +  WD   G LL
Sbjct:   59 VIIADKAGDVYQYSAKDSVAKPSLL-----LGHLSM-IMDMVVTDDNKFIITADRDEKIRVSHYPNSYNIEAFCLQHQDFVSKICLLNKSGVL---------ASGGGDGSIHFWDFRIGRLL 165          
BLAST of mRNA_P-wetherbeei_contig903.1.1 vs. uniprot
Match: G4TXJ8_SERID (tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit TRM82 n=1 Tax=Serendipita indica (strain DSM 11827) TaxID=1109443 RepID=G4TXJ8_SERID)

HSP 1 Score: 70.9 bits (172), Expect = 2.770e-11
Identity = 58/177 (32.77%), Postives = 85/177 (48.02%), Query Frame = 1
Query:   16 LIASTTRPKRCTRLLFAPAFSLDESATARRVLIVADKFGDVWSW------VPSGNQSSAASLEGRH-------------LLGHTSATITCMATTHDGRLLLTGDRVERVRVSHFPNTCLIKSYLLRHTDFVAAVTAVSPPATLGRVSAPTLVATAGGDGMVGLWDASTGDLLSWLDV 489
            L++S   PK+  +LL           T    ++VADKFGDV+S+      +P        SLE R              ++GHTS+ ++ M  + D R L+T DR E +RVSH+P    I+ Y L HT +++A+        + R   P L+ + GGD  +  WD   G LL  LDV
Sbjct:   80 LLSSREIPKKANQLLI----------TQDETILVADKFGDVFSYPMDAPEIPPPVPKPKNSLENRKSVASHSNPSLGTLIVGHTSSLLS-MTLSRDERFLVTADRDEHIRVSHYPRGYNIERYCLGHTKYISAI-------HIHR-HLPHLLISGGGDRALYFWDYLKGTLLHRLDV 237          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig903.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHJ6_ECTSI1.740e-2542.94tRNA (Guanine-n(7)-)-methyltransferase complex sub... [more]
A0A6H5KN97_9PHAE6.820e-2543.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0L0SCE7_ALLM34.300e-1540.77tRNA (guanine-N(7)-)-methyltransferase non-catalyt... [more]
W7TCQ7_9STRA1.070e-1337.58Trna (Guanine-n7-)-methyltransferase n=2 Tax=Monod... [more]
A0A642UGM3_DIURU2.610e-1235.29tRNA (guanine-N(7)-)-methyltransferase non-catalyt... [more]
A0A8K1C303_PYTOL9.960e-1238.35Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A8J9RH72_9CHLO1.510e-1142.75Probable tRNA (Guanine-N(7)-)-methyltransferase no... [more]
A0A7J7JZ76_BUGNE1.720e-1133.95tRNA (guanine-N(7)-)-methyltransferase non-catalyt... [more]
A7S5I5_NEMVE2.600e-1135.25Predicted protein (Fragment) n=1 Tax=Nematostella ... [more]
G4TXJ8_SERID2.770e-1132.77tRNA (guanine-N(7)-)-methyltransferase non-catalyt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig903contigP-wetherbeei_contig903:304..795 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LHJ6
Preferred nameTRM82
PFAMsWD40
Model size492
Max annot lvl2759|Eukaryota
KEGG rclassRC00367,RC00942
KEGG koko:K01968,ko:K15443
KEGG ReactionR04138
KEGG Pathwayko00280,ko01100,map00280,map01100
KEGG ModuleM00036
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001510,GO:0001673,GO:0001674,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0030488,GO:0032259,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0036265,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0043527,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0046483,GO:0048232,GO:0048468,GO:0048477,GO:0048609,GO:0048856,GO:0048869,GO:0051704,GO:0071704,GO:0090304,GO:0106004,GO:1901360,GO:1902494,GO:1990234
Exons1
Evalue2.85e-26
EggNOG OGsKOG3914@1|root,KOG3914@2759|Eukaryota
EC6.4.1.4
DescriptionRNA (guanine-N7)-methylation
Cds size492
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187072.4665596-CDS-P-wetherbeei_contig903:303..7951683187072.4665596-CDS-P-wetherbeei_contig903:303..795Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig903 304..795 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig903.1.1prot_P-wetherbeei_contig903.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig903 304..795 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig903.1.1

>prot_P-wetherbeei_contig903.1.1 ID=prot_P-wetherbeei_contig903.1.1|Name=mRNA_P-wetherbeei_contig903.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=164bp
AATGCLIASTTRPKRCTRLLFAPAFSLDESATARRVLIVADKFGDVWSWV
PSGNQSSAASLEGRHLLGHTSATITCMATTHDGRLLLTGDRVERVRVSHF
PNTCLIKSYLLRHTDFVAAVTAVSPPATLGRVSAPTLVATAGGDGMVGLW
DASTGDLLSWLDVR
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mRNA from alignment at P-wetherbeei_contig903:304..795-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig903.1.1 ID=mRNA_P-wetherbeei_contig903.1.1|Name=mRNA_P-wetherbeei_contig903.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig903:304..795- (Phaeothamnion wetherbeei SAG_119_79)
GCGGCCACGGGATGCCTCATCGCGTCTACGACGCGTCCCAAGCGGTGCAC GCGGCTGCTCTTTGCGCCCGCTTTCAGCCTCGATGAGAGTGCGACCGCAA GGCGCGTCCTGATCGTCGCGGACAAGTTCGGCGACGTGTGGTCGTGGGTA CCGTCGGGGAACCAAAGCTCCGCCGCTAGTCTCGAGGGCAGGCACCTGCT GGGACACACCAGCGCGACGATCACATGTATGGCGACGACGCATGACGGCC GCCTCCTCCTGACGGGCGACCGCGTCGAGCGCGTGCGCGTCTCGCATTTC CCCAACACCTGCTTGATAAAGTCATATCTCTTGCGCCACACAGACTTTGT GGCCGCCGTCACCGCCGTCTCTCCACCCGCGACGTTGGGACGCGTTTCCG CCCCGACGCTGGTGGCAACGGCCGGCGGCGATGGCATGGTGGGCTTGTGG GACGCCAGTACAGGTGATCTCTTGTCCTGGCTGGACGTCCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig903:304..795-

>mRNA_P-wetherbeei_contig903.1.1 ID=mRNA_P-wetherbeei_contig903.1.1|Name=mRNA_P-wetherbeei_contig903.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig903:304..795- (Phaeothamnion wetherbeei SAG_119_79)
GCGGCCACGGGATGCCTCATCGCGTCTACGACGCGTCCCAAGCGGTGCAC
GCGGCTGCTCTTTGCGCCCGCTTTCAGCCTCGATGAGAGTGCGACCGCAA
GGCGCGTCCTGATCGTCGCGGACAAGTTCGGCGACGTGTGGTCGTGGGTA
CCGTCGGGGAACCAAAGCTCCGCCGCTAGTCTCGAGGGCAGGCACCTGCT
GGGACACACCAGCGCGACGATCACATGTATGGCGACGACGCATGACGGCC
GCCTCCTCCTGACGGGCGACCGCGTCGAGCGCGTGCGCGTCTCGCATTTC
CCCAACACCTGCTTGATAAAGTCATATCTCTTGCGCCACACAGACTTTGT
GGCCGCCGTCACCGCCGTCTCTCCACCCGCGACGTTGGGACGCGTTTCCG
CCCCGACGCTGGTGGCAACGGCCGGCGGCGATGGCATGGTGGGCTTGTGG
GACGCCAGTACAGGTGATCTCTTGTCCTGGCTGGACGTCCGG
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