mRNA_P-wetherbeei_contig8894.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8894.1.1
Unique NamemRNA_P-wetherbeei_contig8894.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8894.1.1 vs. uniprot
Match: A0A446M2G3_TRITD (Uncharacterized protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446M2G3_TRITD)

HSP 1 Score: 50.4 bits (119), Expect = 8.200e-6
Identity = 23/44 (52.27%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:   79 LAGVNAVILGCAIRGSMDRAFATAEALRNRFGLRPDVETYNALL 210
            +A +N VILGCA    ++RA+ T EA++ +FGL PD+ +YNALL
Sbjct:   19 VAALNCVILGCANIWDIERAYETFEAMKEKFGLTPDIHSYNALL 62
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BLAST of mRNA_P-wetherbeei_contig8894.1.1 vs. uniprot
Match: A0A8J5VTA5_ZIZPA (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5VTA5_ZIZPA)

HSP 1 Score: 51.2 bits (121), Expect = 9.280e-6
Identity = 28/67 (41.79%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:   10 LDAAYYLLDARHQEAGGAPGSVPLAGVNAVILGCAIRGSMDRAFATAEALRNRFGLRPDVETYNALL 210
            LD+ Y  L+     +   P    +A +N VILGCA    ++RA+ T EA++ +FGL PD+ +YNALL
Sbjct:  445 LDSVYVQLE---NLSSADPPYKSVAALNCVILGCANIWDLERAYETFEAIKEKFGLTPDIHSYNALL 508
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BLAST of mRNA_P-wetherbeei_contig8894.1.1 vs. uniprot
Match: J3MMN6_ORYBR (Uncharacterized protein n=1 Tax=Oryza brachyantha TaxID=4533 RepID=J3MMN6_ORYBR)

HSP 1 Score: 51.2 bits (121), Expect = 9.310e-6
Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:   79 LAGVNAVILGCAIRGSMDRAFATAEALRNRFGLRPDVETYNALL 210
            +A +N VILGCA    ++RA+ T EA++ +FGL PDV +YNALL
Sbjct:  503 VAALNCVILGCANIWDLERAYETFEAIKEKFGLTPDVHSYNALL 546
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BLAST of mRNA_P-wetherbeei_contig8894.1.1 vs. uniprot
Match: A0A453B606_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453B606_AEGTS)

HSP 1 Score: 50.8 bits (120), Expect = 1.250e-5
Identity = 28/67 (41.79%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:   10 LDAAYYLLDARHQEAGGAPGSVPLAGVNAVILGCAIRGSMDRAFATAEALRNRFGLRPDVETYNALL 210
            LD+ Y  L+     +   P    +A +N VILGCA    ++RA+ T EA++ +FGL PD+ +YNALL
Sbjct:  241 LDSVYVQLE---NLSSADPPYKSVAALNCVILGCANIWDIERAYETFEAMKEKFGLTPDIHSYNALL 304
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BLAST of mRNA_P-wetherbeei_contig8894.1.1 vs. uniprot
Match: M8BN08_AEGTA (PPR_long domain-containing protein n=10 Tax=Triticinae TaxID=1648030 RepID=M8BN08_AEGTA)

HSP 1 Score: 50.8 bits (120), Expect = 1.260e-5
Identity = 28/67 (41.79%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:   10 LDAAYYLLDARHQEAGGAPGSVPLAGVNAVILGCAIRGSMDRAFATAEALRNRFGLRPDVETYNALL 210
            LD+ Y  L+     +   P    +A +N VILGCA    ++RA+ T EA++ +FGL PD+ +YNALL
Sbjct:  343 LDSVYVQLE---NLSSADPPYKSVAALNCVILGCANIWDIERAYETFEAMKEKFGLTPDIHSYNALL 406
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BLAST of mRNA_P-wetherbeei_contig8894.1.1 vs. uniprot
Match: I1GSP8_BRADI (Uncharacterized protein n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=I1GSP8_BRADI)

HSP 1 Score: 50.8 bits (120), Expect = 1.270e-5
Identity = 28/67 (41.79%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:   10 LDAAYYLLDARHQEAGGAPGSVPLAGVNAVILGCAIRGSMDRAFATAEALRNRFGLRPDVETYNALL 210
            LD+ Y  L+     +   P    +A +N VI+GCA    ++RA+ T EAL+ +FGL PD+ +YNALL
Sbjct:  441 LDSVYVQLE---NLSSADPPYKSVAALNCVIVGCANIWDLERAYETFEALKEKFGLTPDIHSYNALL 504
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BLAST of mRNA_P-wetherbeei_contig8894.1.1 vs. uniprot
Match: A0A453B5X7_AEGTS (PPR_long domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453B5X7_AEGTS)

HSP 1 Score: 50.8 bits (120), Expect = 1.270e-5
Identity = 28/67 (41.79%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:   10 LDAAYYLLDARHQEAGGAPGSVPLAGVNAVILGCAIRGSMDRAFATAEALRNRFGLRPDVETYNALL 210
            LD+ Y  L+     +   P    +A +N VILGCA    ++RA+ T EA++ +FGL PD+ +YNALL
Sbjct:  440 LDSVYVQLE---NLSSADPPYKSVAALNCVILGCANIWDIERAYETFEAMKEKFGLTPDIHSYNALL 503
[Close]
BLAST of mRNA_P-wetherbeei_contig8894.1.1 vs. uniprot
Match: A0A0D3GT57_9ORYZ (GST N-terminal domain-containing protein n=2 Tax=Oryza barthii TaxID=65489 RepID=A0A0D3GT57_9ORYZ)

HSP 1 Score: 50.8 bits (120), Expect = 1.270e-5
Identity = 23/44 (52.27%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:   79 LAGVNAVILGCAIRGSMDRAFATAEALRNRFGLRPDVETYNALL 210
            +A +N VILGCA    ++RA+ T EA++ +FGL PD+ +YNALL
Sbjct:  520 VAALNCVILGCANIWDLERAYETFEAIKEKFGLTPDIHSYNALL 563
[Close]
BLAST of mRNA_P-wetherbeei_contig8894.1.1 vs. uniprot
Match: A2YND5_ORYSI (Uncharacterized protein n=1 Tax=Oryza sativa subsp. indica TaxID=39946 RepID=A2YND5_ORYSI)

HSP 1 Score: 50.8 bits (120), Expect = 1.290e-5
Identity = 23/44 (52.27%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:   79 LAGVNAVILGCAIRGSMDRAFATAEALRNRFGLRPDVETYNALL 210
            +A +N VILGCA    ++RA+ T EA++ +FGL PD+ +YNALL
Sbjct:  775 VAALNCVILGCANIWDLERAYETFEAIKEKFGLTPDIHSYNALL 818
[Close]
BLAST of mRNA_P-wetherbeei_contig8894.1.1 vs. uniprot
Match: A0A0E0EE27_9ORYZ (Uncharacterized protein n=2 Tax=Oryza meridionalis TaxID=40149 RepID=A0A0E0EE27_9ORYZ)

HSP 1 Score: 50.8 bits (120), Expect = 1.290e-5
Identity = 23/44 (52.27%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:   79 LAGVNAVILGCAIRGSMDRAFATAEALRNRFGLRPDVETYNALL 210
            +A +N VILGCA    ++RA+ T EA++ +FGL PD+ +YNALL
Sbjct:  810 VAALNCVILGCANIWDLERAYETFEAIKEKFGLTPDIHSYNALL 853
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8894.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A446M2G3_TRITD8.200e-652.27Uncharacterized protein n=1 Tax=Triticum turgidum ... [more]
A0A8J5VTA5_ZIZPA9.280e-641.79Uncharacterized protein n=1 Tax=Zizania palustris ... [more]
J3MMN6_ORYBR9.310e-654.55Uncharacterized protein n=1 Tax=Oryza brachyantha ... [more]
A0A453B606_AEGTS1.250e-541.79Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]
M8BN08_AEGTA1.260e-541.79PPR_long domain-containing protein n=10 Tax=Tritic... [more]
I1GSP8_BRADI1.270e-541.79Uncharacterized protein n=1 Tax=Brachypodium dista... [more]
A0A453B5X7_AEGTS1.270e-541.79PPR_long domain-containing protein n=1 Tax=Aegilop... [more]
A0A0D3GT57_9ORYZ1.270e-552.27GST N-terminal domain-containing protein n=2 Tax=O... [more]
A2YND5_ORYSI1.290e-552.27Uncharacterized protein n=1 Tax=Oryza sativa subsp... [more]
A0A0E0EE27_9ORYZ1.290e-552.27Uncharacterized protein n=2 Tax=Oryza meridionalis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8894contigP-wetherbeei_contig8894:585..794 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog3218.PP1S34_156V6.1
PFAMsPPR,PPR_2,PPR_3
Model size210
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:1901360,GO:1901363
Exons1
Evalue1.14e-09
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota,37IFV@33090|Viridiplantae,3GD6H@35493|Streptophyta
Ec32 ortholog descriptionRibosomal protein L10/L12
Ec32 orthologEc-12_002650.1
DescriptionPentatricopeptide repeat-containing protein At1g26460
Cds size210
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187065.0263026-CDS-P-wetherbeei_contig8894:584..7941683187065.0263026-CDS-P-wetherbeei_contig8894:584..794Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8894 585..794 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8894.1.1prot_P-wetherbeei_contig8894.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8894 585..794 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8894.1.1

>prot_P-wetherbeei_contig8894.1.1 ID=prot_P-wetherbeei_contig8894.1.1|Name=mRNA_P-wetherbeei_contig8894.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=70bp
MERLDAAYYLLDARHQEAGGAPGSVPLAGVNAVILGCAIRGSMDRAFATA
EALRNRFGLRPDVETYNALL
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mRNA from alignment at P-wetherbeei_contig8894:585..794+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8894.1.1 ID=mRNA_P-wetherbeei_contig8894.1.1|Name=mRNA_P-wetherbeei_contig8894.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=210bp|location=Sequence derived from alignment at P-wetherbeei_contig8894:585..794+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGCGCCTCGACGCCGCCTACTACCTCCTCGACGCGCGCCACCAGGA
AGCCGGCGGCGCTCCCGGCTCGGTGCCGCTGGCTGGCGTCAACGCCGTCA
TCCTTGGCTGCGCCATCCGAGGCTCGATGGACCGGGCGTTCGCGACGGCG
GAGGCGCTGCGGAACCGGTTCGGGCTGCGCCCGGACGTGGAGACGTACAA
TGCGCTGCTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8894:585..794+

>mRNA_P-wetherbeei_contig8894.1.1 ID=mRNA_P-wetherbeei_contig8894.1.1|Name=mRNA_P-wetherbeei_contig8894.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=210bp|location=Sequence derived from alignment at P-wetherbeei_contig8894:585..794+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGCGCCTCGACGCCGCCTACTACCTCCTCGACGCGCGCCACCAGGA
AGCCGGCGGCGCTCCCGGCTCGGTGCCGCTGGCTGGCGTCAACGCCGTCA
TCCTTGGCTGCGCCATCCGAGGCTCGATGGACCGGGCGTTCGCGACGGCG
GAGGCGCTGCGGAACCGGTTCGGGCTGCGCCCGGACGTGGAGACGTACAA
TGCGCTGCTT
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