mRNA_P-wetherbeei_contig8880.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8880.1.1
Unique NamemRNA_P-wetherbeei_contig8880.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8880.1.1 vs. uniprot
Match: A0A3R7D617_9STRA (EF-hand domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7D617_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.400e-8
Identity = 27/56 (48.21%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    1 MDPKRIFTPEQIQVPPALPGVLKEYAKAVLRSSPQTREEIVAFSVDYFREKAGIPG 168
            MD  RIF+ EQI+VPP LP VLKE+ K V+R+SP   +++  FS+ +F+++A   G
Sbjct:    1 MDVNRIFSAEQIEVPPDLPLVLKEWTKDVIRTSP---DDLAVFSLQWFKDRANEQG 53
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BLAST of mRNA_P-wetherbeei_contig8880.1.1 vs. uniprot
Match: A0A2D4C1R7_PYTIN (Radial spoke protein 11 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C1R7_PYTIN)

HSP 1 Score: 55.1 bits (131), Expect = 3.750e-8
Identity = 27/54 (50.00%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:    1 MDPKRIFTPEQIQVPPALPGVLKEYAKAVLRSSPQTREEIVAFSVDYFREKAGI 162
            MD  RIF+ EQI VPP LP VLK++ KAV+R +P   E+++ FS+ +F+EK  +
Sbjct:    1 MDVNRIFSAEQIAVPPDLPHVLKDWTKAVIRGNP---EDVLQFSLQWFQEKTTL 51
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BLAST of mRNA_P-wetherbeei_contig8880.1.1 vs. uniprot
Match: A0A5D6XJ58_9STRA (EF-hand domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJ58_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 5.290e-8
Identity = 28/54 (51.85%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:    1 MDPKRIFTPEQIQVPPALPGVLKEYAKAVLRSSPQTREEIVAFSVDYFREKAGI 162
            MD  RIF+ EQI VPP LP V K++AKAV+R SP   E+++ FS+ +F+ KA +
Sbjct:    1 MDVNRIFSAEQIAVPPDLPLVAKDWAKAVIRESP---EDVLLFSLQWFQGKAAL 51
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BLAST of mRNA_P-wetherbeei_contig8880.1.1 vs. uniprot
Match: A0A024UV65_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024UV65_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.080e-7
Identity = 27/56 (48.21%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    1 MDPKRIFTPEQIQVPPALPGVLKEYAKAVLRSSPQTREEIVAFSVDYFREKAGIPG 168
            MD  RIF+ EQI+VPP LP VLKE+ K V+R+SP   +++  FS+ +F+++A   G
Sbjct:    1 MDVNRIFSAEQIEVPPDLPLVLKEWTKDVIRTSP---DDLAVFSLQWFKDRANELG 53
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BLAST of mRNA_P-wetherbeei_contig8880.1.1 vs. uniprot
Match: K3WFP0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WFP0_GLOUD)

HSP 1 Score: 55.5 bits (132), Expect = 1.670e-7
Identity = 27/54 (50.00%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    1 MDPKRIFTPEQIQVPPALPGVLKEYAKAVLRSSPQTREEIVAFSVDYFREKAGI 162
            MD  RIF+ EQI VPP LP V+K++ KAV+R +P   E+++ FS+ +F+EKA +
Sbjct: 1302 MDVNRIFSAEQIAVPPDLPLVIKDWTKAVIRDNP---EDLLCFSLKWFQEKAAL 1352
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BLAST of mRNA_P-wetherbeei_contig8880.1.1 vs. uniprot
Match: A0A8K1CE23_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CE23_PYTOL)

HSP 1 Score: 53.1 bits (126), Expect = 2.100e-7
Identity = 25/54 (46.30%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:    1 MDPKRIFTPEQIQVPPALPGVLKEYAKAVLRSSPQTREEIVAFSVDYFREKAGI 162
            MD  RIF+ EQI VPP LP V+KE+ K+V+R +P   E+++ FS+ +F++K  +
Sbjct:    1 MDVNRIFSAEQIAVPPDLPHVIKEWTKSVIRENP---EDVLYFSLKWFQDKTNL 51
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BLAST of mRNA_P-wetherbeei_contig8880.1.1 vs. uniprot
Match: A0A225VSG9_9STRA (Radial spoke protein 11 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VSG9_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 3.250e-7
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 MDPKRIFTPEQIQVPPALPGVLKEYAKAVLRSSPQTREEIVAFSVDYFREK 153
            MD  RIF+ EQI VPP LP VLK++ KAV+R +P    ++VAFS  +F++K
Sbjct:    1 MDVNRIFSAEQIAVPPDLPQVLKDWTKAVIRENPG---DVVAFSQQWFQDK 48
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BLAST of mRNA_P-wetherbeei_contig8880.1.1 vs. uniprot
Match: A0A3F2RFF9_9STRA (EF-hand domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A3F2RFF9_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 3.680e-7
Identity = 26/54 (48.15%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:    1 MDPKRIFTPEQIQVPPALPGVLKEYAKAVLRSSPQTREEIVAFSVDYFREKAGI 162
            MD  RIF+ EQI VPP LP VLK++ KAV+R +P    +++ FS  +F++KA +
Sbjct:    1 MDVNRIFSAEQIAVPPDLPQVLKDWTKAVIRENPT---DLLTFSQQWFQDKAAL 51
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BLAST of mRNA_P-wetherbeei_contig8880.1.1 vs. uniprot
Match: H3HB34_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HB34_PHYRM)

HSP 1 Score: 54.3 bits (129), Expect = 4.260e-7
Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 MDPKRIFTPEQIQVPPALPGVLKEYAKAVLRSSPQTREEIVAFSVDYFREKA 156
            MD  RIF+ EQI VPP LP VLK++ KAV+R SP    +++AFS  +F++KA
Sbjct:  997 MDVNRIFSAEQIAVPPDLPHVLKDWTKAVIRESPT---DLLAFSQQWFQDKA 1045
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BLAST of mRNA_P-wetherbeei_contig8880.1.1 vs. uniprot
Match: A0A662YH16_9STRA (J domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YH16_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 5.850e-7
Identity = 26/54 (48.15%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:    1 MDPKRIFTPEQIQVPPALPGVLKEYAKAVLRSSPQTREEIVAFSVDYFREKAGI 162
            MD  RIF+ EQI VPP LP VLK++ KA +R +P    ++ AFS+ +F++KA +
Sbjct: 1800 MDVNRIFSAEQIAVPPELPQVLKDWTKATIRENPT---DLAAFSLQWFQDKAAL 1850
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8880.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A3R7D617_9STRA2.400e-848.21EF-hand domain-containing protein n=1 Tax=Aphanomy... [more]
A0A2D4C1R7_PYTIN3.750e-850.00Radial spoke protein 11 n=1 Tax=Pythium insidiosum... [more]
A0A5D6XJ58_9STRA5.290e-851.85EF-hand domain-containing protein n=1 Tax=Pythium ... [more]
A0A024UV65_9STRA1.080e-748.21Uncharacterized protein n=4 Tax=Aphanomyces TaxID=... [more]
K3WFP0_GLOUD1.670e-750.00Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A8K1CE23_PYTOL2.100e-746.30Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A225VSG9_9STRA3.250e-752.94Radial spoke protein 11 n=1 Tax=Phytophthora megak... [more]
A0A3F2RFF9_9STRA3.680e-748.15EF-hand domain-containing protein n=9 Tax=Phytopht... [more]
H3HB34_PHYRM4.260e-753.85Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A662YH16_9STRA5.850e-748.15J domain-containing protein (Fragment) n=2 Tax=Not... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8880contigP-wetherbeei_contig8880:1170..1337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog36331.EPrPI00000022679
PFAMsEF-hand_7
Model size168
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue4.44e-09
EggNOG OGs28VPH@1|root,2RW2Q@2759|Eukaryota,1MJFP@121069|Pythiales
Ec32 ortholog descriptionDimerization-anchoring domain of cAMP-dependent protein kinase, regulatory subunit
Ec32 orthologEc-01_006490.1
DescriptionRadial spoke protein 11. Source PGD
Cds size168
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187064.3168602-CDS-P-wetherbeei_contig8880:1169..13371683187064.3168602-CDS-P-wetherbeei_contig8880:1169..1337Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8880 1170..1337 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8880.1.1prot_P-wetherbeei_contig8880.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8880 1170..1337 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8880.1.1

>prot_P-wetherbeei_contig8880.1.1 ID=prot_P-wetherbeei_contig8880.1.1|Name=mRNA_P-wetherbeei_contig8880.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=56bp
MDPKRIFTPEQIQVPPALPGVLKEYAKAVLRSSPQTREEIVAFSVDYFRE
KAGIPG
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mRNA from alignment at P-wetherbeei_contig8880:1170..1337+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8880.1.1 ID=mRNA_P-wetherbeei_contig8880.1.1|Name=mRNA_P-wetherbeei_contig8880.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=168bp|location=Sequence derived from alignment at P-wetherbeei_contig8880:1170..1337+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACCCGAAAAGAATTTTCACGCCGGAGCAAATCCAAGTGCCGCCCGC
GCTGCCCGGTGTTTTGAAAGAATACGCCAAGGCGGTGCTTCGAAGCAGCC
CCCAAACAAGAGAAGAAATAGTCGCCTTTTCCGTCGACTACTTCCGCGAG
AAGGCGGGCATTCCGGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8880:1170..1337+

>mRNA_P-wetherbeei_contig8880.1.1 ID=mRNA_P-wetherbeei_contig8880.1.1|Name=mRNA_P-wetherbeei_contig8880.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=168bp|location=Sequence derived from alignment at P-wetherbeei_contig8880:1170..1337+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACCCGAAAAGAATTTTCACGCCGGAGCAAATCCAAGTGCCGCCCGC
GCTGCCCGGTGTTTTGAAAGAATACGCCAAGGCGGTGCTTCGAAGCAGCC
CCCAAACAAGAGAAGAAATAGTCGCCTTTTCCGTCGACTACTTCCGCGAG
AAGGCGGGCATTCCGGGA
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