mRNA_P-wetherbeei_contig887.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig887.3.1
Unique NamemRNA_P-wetherbeei_contig887.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig887.3.1 vs. uniprot
Match: UPI001C91AC68 (hypothetical protein n=1 Tax=Rhizobium laguerreae TaxID=1076926 RepID=UPI001C91AC68)

HSP 1 Score: 100 bits (248), Expect = 2.140e-23
Identity = 56/139 (40.29%), Postives = 78/139 (56.12%), Query Frame = 1 
Query:    1 MPFVVPVIHHVSNDLTYKNVHLAREAGCHGVFLINHDATVPDSVLNEPAVAIKLAYPSWFVGTNRLGQSPLEAIRVDAALGLDATWCDAPGMSSSGVDRMGAYTVQAYEEVVGRYPHFKLFASVAFKYQEAEPFPARAA 417
            M  ++ VIH++ +   + N  +    G  GV LI+ +    D ++ E AV+IK  YP   V TNRL   P++ IR DAALGLD +WCD PG+SS GV ++     +   ++    P F  F SVAFK Q  +P PA AA
Sbjct:    1 MTKLIAVIHYLDDKTAFANADIVVSGGFDGVCLIHMEGK--DDLIEEAAVSIKRKYPDTIVITNRLSMHPVDMIRRDAALGLDGSWCDNPGVSSKGVTQLAKDIEEVIFDIRKEKPGFLFFGSVAFKTQAYDPDPATAA 137
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BLAST of mRNA_P-wetherbeei_contig887.3.1 vs. uniprot
Match: UPI0006C504FC (hypothetical protein n=1 Tax=Achromobacter sp. 2789STDY5608633 TaxID=1806501 RepID=UPI0006C504FC)

HSP 1 Score: 86.3 bits (212), Expect = 4.890e-18
Identity = 57/138 (41.30%), Postives = 74/138 (53.62%), Query Frame = 1 
Query:   10 VVPVIHHVSNDLTYKNVHLAREAGCHGVFLINHDATVPDSVLNEPAVAIKLAYPSWFVGTNRLGQSPLEAIRVDAALGLDATWCDAPGMSSSGV-DRMGAYTVQAYEEVVGRYPHFKLFASVAFKYQEAEPFPARAAR 420
            V PV+H+      +    LA +AG  GVFLI+H+    D +L   A  IK  +   FVG N LG S +E+ R   A GLD  W D PG+ S GV D+  A   Q +       P  ++FASVAFKYQ+A+  P  AAR
Sbjct:   10 VYPVVHYRDRAQAFSQSELAFDAGAPGVFLISHNQH--DELLVPLACDIKARHADKFVGVNHLGLSAVESFRALLASGLDGMWTDRPGVDSRGVHDKRLADLAQDH-------PALRVFASVAFKYQDADEDPPLAAR 138
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BLAST of mRNA_P-wetherbeei_contig887.3.1 vs. uniprot
Match: A0A1E4ZV75_9GAMM (Adenine phosphoribosyltransferase n=1 Tax=Chromatiales bacterium (ex Bugula neritina AB1) TaxID=1868282 RepID=A0A1E4ZV75_9GAMM)

HSP 1 Score: 54.7 bits (130), Expect = 3.800e-6
Identity = 32/90 (35.56%), Postives = 46/90 (51.11%), Query Frame = 1 
Query:   10 VVPVIHHVSNDLTYKNVHLAREAGCHGVFLINHDATVPDSVLNEPAVAIKLAYPSWFVGTNRLGQS-----PLEAIRVDAALGLDATWCD 264
            V+PVIH + N    +N+  AR+ GC GVFLINHD   P           +L +P +++G N L  +     P+ A   D  + +DA W D
Sbjct:   17 VLPVIHVLDNQQAERNIERARDGGCPGVFLINHD--FPYERFLPIIRHCRLCFPDYWIGVNFLAVTGKTAFPILAELRDEGVRVDAYWAD 104
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig887.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI001C91AC682.140e-2340.29hypothetical protein n=1 Tax=Rhizobium laguerreae ... [more]
UPI0006C504FC4.890e-1841.30hypothetical protein n=1 Tax=Achromobacter sp. 278... [more]
A0A1E4ZV75_9GAMM3.800e-635.56Adenine phosphoribosyltransferase n=1 Tax=Chromati... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig887contigP-wetherbeei_contig887:8074..8493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog3988.XP_002534827.1
PFAMsBtpA
Model size420
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.57e-15
EggNOG OGs2E1NV@1|root,2S8Z4@2759|Eukaryota
Cds size420
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187063.9286613-CDS-P-wetherbeei_contig887:8073..84931683187063.9286613-CDS-P-wetherbeei_contig887:8073..8493Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig887 8074..8493 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig887.3.1prot_P-wetherbeei_contig887.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig887 8074..8493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig887.3.1

>prot_P-wetherbeei_contig887.3.1 ID=prot_P-wetherbeei_contig887.3.1|Name=mRNA_P-wetherbeei_contig887.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=140bp
MPFVVPVIHHVSNDLTYKNVHLAREAGCHGVFLINHDATVPDSVLNEPAV
AIKLAYPSWFVGTNRLGQSPLEAIRVDAALGLDATWCDAPGMSSSGVDRM
GAYTVQAYEEVVGRYPHFKLFASVAFKYQEAEPFPARAAR
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mRNA from alignment at P-wetherbeei_contig887:8074..8493+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig887.3.1 ID=mRNA_P-wetherbeei_contig887.3.1|Name=mRNA_P-wetherbeei_contig887.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=420bp|location=Sequence derived from alignment at P-wetherbeei_contig887:8074..8493+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTTTTGTGGTTCCCGTGATTCACCACGTGAGCAACGATTTGACGTA
CAAAAATGTTCATTTGGCCCGAGAAGCCGGTTGCCACGGTGTGTTCCTGA
TCAACCACGATGCGACTGTTCCCGATTCGGTCCTCAACGAGCCCGCCGTC
GCCATCAAACTCGCCTACCCCTCCTGGTTTGTCGGCACCAACCGGCTGGG
ACAGTCCCCTTTGGAAGCCATTCGCGTCGATGCTGCCCTGGGCCTCGATG
CCACGTGGTGCGACGCTCCCGGGATGTCGAGCTCCGGCGTCGACCGCATG
GGCGCCTACACGGTCCAAGCGTACGAGGAAGTCGTCGGCCGATACCCGCA
CTTTAAACTCTTTGCGAGCGTGGCGTTCAAATACCAAGAGGCGGAACCGT
TTCCCGCCCGTGCCGCGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig887:8074..8493+

>mRNA_P-wetherbeei_contig887.3.1 ID=mRNA_P-wetherbeei_contig887.3.1|Name=mRNA_P-wetherbeei_contig887.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=420bp|location=Sequence derived from alignment at P-wetherbeei_contig887:8074..8493+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTTTTGTGGTTCCCGTGATTCACCACGTGAGCAACGATTTGACGTA
CAAAAATGTTCATTTGGCCCGAGAAGCCGGTTGCCACGGTGTGTTCCTGA
TCAACCACGATGCGACTGTTCCCGATTCGGTCCTCAACGAGCCCGCCGTC
GCCATCAAACTCGCCTACCCCTCCTGGTTTGTCGGCACCAACCGGCTGGG
ACAGTCCCCTTTGGAAGCCATTCGCGTCGATGCTGCCCTGGGCCTCGATG
CCACGTGGTGCGACGCTCCCGGGATGTCGAGCTCCGGCGTCGACCGCATG
GGCGCCTACACGGTCCAAGCGTACGAGGAAGTCGTCGGCCGATACCCGCA
CTTTAAACTCTTTGCGAGCGTGGCGTTCAAATACCAAGAGGCGGAACCGT
TTCCCGCCCGTGCCGCGCGC
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