mRNA_P-wetherbeei_contig8864.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8864.1.1
Unique NamemRNA_P-wetherbeei_contig8864.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8864.1.1 vs. uniprot
Match: D7G030_ECTSI (EXS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G030_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 2.960e-26
Identity = 77/205 (37.56%), Postives = 110/205 (53.66%), Query Frame = 3 
Query:  159 MSPTDLEELYLTTIRAPVVILLFLSLWGVVMIILQALRIDYNAVLLL---PKLEERPRA---------------SHRQVLGTAGSLLVVFLTCLYAGERMMRAP-NIAVGAFYIFAG--MVLALQTRRCMGDNVIFFSRVLWLVALPGHDVHFAEVFVADALTSLNRVIADAGCALTLLMWSWT-----GGDVYPPNLKVSASFW 695
            MS  + EELYL ++R P+V+ +FL LWG+V+++LQAL+I++++VL     P+L    +                S RQV+ TA   L V L C++ G RM+R P  +AVG FY   G  +++ LQ         +FF+ +   V  P  DVHFAEV VADALTSL+RV AD      L+   W         +Y P +  S  +W
Sbjct:    2 MSSDEYEELYLASVRVPLVLAVFLGLWGLVILVLQALQIEFSSVLRKASGPRLATEDQGDTSGKGKPTRVPTPPSWRQVVSTAAGFLGVLLACIH-GSRMLRVPPTVAVGGFYFILGGALLVPLQAPSVRQHTALFFTSLAG-VFFPATDVHFAEVLVADALTSLSRVFADVAVTFLLVAKGWGMRYPGWAFLYTPCVFASFPYW 204
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BLAST of mRNA_P-wetherbeei_contig8864.1.1 vs. uniprot
Match: A0A7S2V3Y7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3Y7_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.190e-12
Identity = 50/171 (29.24%), Postives = 90/171 (52.63%), Query Frame = 3 
Query:  183 LYLTTIRAPVVILLFLSLWGVVMIILQALRIDYNAVLLLPKLEERPRASHRQVLGTAGSLLVVFLTCLYAGE---------RMMRAPNIAVGAFYIFAGMVLALQTRRCMGDNVIFFSRVLWLVALPGHDVHFAEVFVADALTSLNRVIADAGCALTLLM---WSWTGGDV 659
            ++   +RAP+VI+++++LWG  ++IL+ LRI  ++V            S  +++  +G+ L  +  CL++G          R+   P  AV  FY+  G+ L L + +    ++ +   V+  +  P   V+F EVFVAD++TSL +V+AD G  + L+    + W  G V
Sbjct:    1 MFCALVRAPLVIIIYIALWGFNLLILEWLRIVPSSVF--------SNKSGPELVTGSGAQLAGYSACLFSGLVFCLGLWCWRLNGTPEGAVCLFYLAVGLYLMLPSSKAFRSHLGYLLGVMKRIFFPQGRVNFVEVFVADSMTSLAKVLADFGAGIWLVALGGYEWEEGAV 163
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BLAST of mRNA_P-wetherbeei_contig8864.1.1 vs. uniprot
Match: W7TLW9_9STRA (Protein-er retention protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TLW9_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.200e-8
Identity = 39/117 (33.33%), Postives = 58/117 (49.57%), Query Frame = 3 
Query:  312 ERPRASHRQVLGTAGSLLVVFLTCLYA-----GERMMRAPNIAVGAFYIFAGMVLALQTRRCMGDNVIFFSRVLWLVALPGHDVHFAEVFVADALTSLNRVIADAG--CALTLLMWS 641
            ++P    R+V+     L++  + C+       G+    AP I    F + A ++    T     +  + F RVLWLV LPG ++HF EV V D LTSL++V  + G  C  TLL  S
Sbjct:  107 QQPVCHPRKVINLVTVLVLAMVFCILIMSELLGQPYQHAPFIFY--FLLLAAVIYPSDTTLMFRELALLFGRVLWLVVLPGTEIHFLEVLVGDILTSLSKVFFEVGLTCVATLLSLS 221
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BLAST of mRNA_P-wetherbeei_contig8864.1.1 vs. uniprot
Match: A0A7S2WQN9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WQN9_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.460e-8
Identity = 60/179 (33.52%), Postives = 84/179 (46.93%), Query Frame = 3 
Query:  159 MSPTDLEELYLTTIRAPVVILLFLSLWGV-VMIILQALRID-YNAVLLLPK------------LEERPRASHRQVLGTAGSLLVVFLTCLYAGERMMRAP-NIAVGAFYIFAGMVLALQTRRCMGDNVIF-----FSRVLWLVALPGHDVHFAEVFVADALTSLNRVIADAGCALTLLM 635
            +SP   +E     +RAP+V +L+L+LWG+ V  I   L ID +  VL  P             L   P  S R +L +A +LL   L        ++      A+ AFY+    +L +      G   IF       RVLW  A    +V F EVFVADA+TSL++V AD G  L +L+
Sbjct:   27 LSPDAHQEYLRALLRAPIVTILYLALWGIAVFFIKTTLHIDLFGTVLARPSPPLVNGRLPGSSLSLPPAPSPRTILLSALALLGTLLWSFLVWCGLLHGSVEGAIFAFYVAIPFILVVLPVVGFGRGNIFPYIRTLRRVLWPSA--EENVPFVEVFVADAMTSLSKVFADTGLVLAVLV 203
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8864.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G030_ECTSI2.960e-2637.56EXS domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2V3Y7_9STRA3.190e-1229.24Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
W7TLW9_9STRA1.200e-833.33Protein-er retention protein n=3 Tax=Monodopsidace... [more]
A0A7S2WQN9_9STRA1.460e-833.52Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8864contigP-wetherbeei_contig8864:649..2676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G030
PFAMsEXS
Model size989
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal anchor
Exons4
Evalue4.74e-29
EggNOG OGsCOG5409@1|root,KOG1162@2759|Eukaryota
Descriptionphosphate ion transport
Cds size546
COG categoryT
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8864.1.1prot_P-wetherbeei_contig8864.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8864 934..2518 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187063.3898335-UTR-P-wetherbeei_contig8864:648..9331683187063.3898335-UTR-P-wetherbeei_contig8864:648..933Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8864 649..933 -
1683187063.443917-UTR-P-wetherbeei_contig8864:2518..26761683187063.443917-UTR-P-wetherbeei_contig8864:2518..2676Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8864 2519..2676 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187063.404168-CDS-P-wetherbeei_contig8864:933..10771683187063.404168-CDS-P-wetherbeei_contig8864:933..1077Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8864 934..1077 -
1683187063.4136658-CDS-P-wetherbeei_contig8864:1458..15311683187063.4136658-CDS-P-wetherbeei_contig8864:1458..1531Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8864 1459..1531 -
1683187063.4232788-CDS-P-wetherbeei_contig8864:1824..20021683187063.4232788-CDS-P-wetherbeei_contig8864:1824..2002Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8864 1825..2002 -
1683187063.4336245-CDS-P-wetherbeei_contig8864:2367..25181683187063.4336245-CDS-P-wetherbeei_contig8864:2367..2518Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8864 2368..2518 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8864.1.1

>prot_P-wetherbeei_contig8864.1.1 ID=prot_P-wetherbeei_contig8864.1.1|Name=mRNA_P-wetherbeei_contig8864.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=182bp
MSPTDLEELYLTTIRAPVVILLFLSLWGVVMIILQALRIDYNAVLLLPKL
EERPRASHRQVLGTAGSLLVVFLTCLYAGERMMRAPNIAVGAFYIFAGMV
LALQTRRCMGDNVIFFSRVLWLVALPGHDVHFAEVFVADALTSLNRVIAD
AGCALTLLMWSWTGGDVYPPNLKVSASFWSG*
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mRNA from alignment at P-wetherbeei_contig8864:649..2676-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8864.1.1 ID=mRNA_P-wetherbeei_contig8864.1.1|Name=mRNA_P-wetherbeei_contig8864.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2028bp|location=Sequence derived from alignment at P-wetherbeei_contig8864:649..2676- (Phaeothamnion wetherbeei SAG_119_79)
GAGGTCAGGGGACAACAGCGACAACAGCAGCGTTCGCAGCGGCATTGGCG
GCGCGGGAGCGACGGCGGCTGTGACGGCCGTGGCACCGACGGCTGCGGTC
GCGGCTGCGGTGGCGGCGGCGACGTCAGCGGCAACGACAGAGGAGGCCGT
GCGGCAAAATGTCTCCCACCGACTTGGAAGAGCTGTATTTGACGACGATA
CGGGCGCCGGTGGTGATCCTGCTGTTCCTGTCGTTATGGGGCGTGGTGAT
GATCATCTTGCAGGCGCTGAGGATAGACTACAACGCCGTCCTCCTGCTGC
CCAAGCTGGGTGAGTAAACTAATGATGGCGAGCATTTTTCGGAGCGAAGT
TTCGTCGGAAGTTTCTTCAGAAGTTTATGGTGAGCTTCTAGAAACAGGAT
TGAATGCTGAAGTTTGCGGACAGCACGCGCTGAATGGGAGAATGTGTGTA
AGACTCGGAACTTCGGAACTCGCAGAGCTTGCCATTGATTGGTGCGAAGT
GGTATGATTACTTTCTTGTTTCTGTCTGCGGAGCGCGCTTTCTTTCTTTC
TTTTGGCGGGGCAGTGCGCCCTCTCTCTGCCTCTGAACCGCCGCCCGCCC
GTTTGCTTCCGTTTACTTTCCTACTATTTGTTTGCTCTATCTCTCTTCCC
TCTTTCTTTTGACGAACCGGGCAGAGGAGCGACCGCGGGCGAGCCATCGG
CAAGTGCTGGGCACGGCGGGCTCTCTCCTCGTCGTCTTCCTGACGTGCCT
ATACGCCGGAGAACGCATGATGCGGGCGCCGAACATCGCCGTCGGCGCCT
TTTACATATTTGCGGGGATGGTGCTCGCGCTGCAGACACGGCGGTGCATG
GGGTGAGTCCGTCTTCGTCCATCAGCGTTTCGCTCATTCGCTGGTCTGCC
GGTCTGGCTGCTGTGGCTGGCTGTCTTTTGTGTGGTTCTCTTGTCGTTTC
TCAGGCTGTCTAACTTTGAATGAATGTTGGAAACAAGAGATGTGACCCTC
GGCGTTATGTTTTGGGAATGCATTGCCGCCTTGCTTCATTTCCTCGGTGC
CCACCGATAGAGTTTTGGGGTTGATTTCAAACTAACAGCAAGAATTACTT
AGCTGTAAACTGCTTTCTTTGAACTCGCGGTTGCTATCGTTGCAGGGATA
ACGTCATCTTCTTTTCGCGGGTGTTGTGGCTGGTGGCGTTGCCCGGCCAC
GACGTCCACTTTGCAGAGGTCAGTTTCGTCATAGATGTTTCTTGAGGTCA
CAAAAGCCATTTTAGCTCACTGTTTAACATGGGAACTGGGCTCTATTGGG
TCCGAGCGGTTTAGGACTTGTGAGCCTGCAGATTATCTCACATCCTAACA
TTAGCTGTTTTGACTAAACTGCGTCGTGAGAAAAAAGTTGTGATATTGAG
AAGGGTTAGGCAAGCGAGAATGGCATCATGGGGAAGGAGGCACCCTCAAT
ATCTTCTGCCTGTTTACGCCCTCTCTCGGGACCTGCGGCGGCGACTGCCG
CGGCGACGATGACGGCAATGGCGGCGACGGCGACGGCTGTGTCGGTGACG
GCGATGGCTGCGGTGGCAATGGCGGGGCATTGCGGGAATCTGTCTTCAGG
TGTTTGTGGCCGACGCATTGACGAGCCTAAACAGAGTAATTGCCGACGCC
GGCTGTGCGCTAACGCTTCTGATGTGGTCATGGACCGGGGGAGACGTATA
TCCGCCAAATCTGAAGGTGAGCGCCTCTTTCTGGAGTGGCTAAATGATTG
ATGTTTTCGTGCTTGGTGGCAGCTGGATGAACTGTAAGAAATGACAGGCG
AACTCCATCCTTTGAGACGGAAAAAGGATGTTGTCGCTGCATAGATATGG
GCGGAAGAAGGAGCCTGAAGCGATGCCATACCATATACTTTCTGTATATG
TATGCCCGTTGAGGTTAACTCTGTTTTGTGAGGCAACATGCAGTTCATCT
GCTTCATTTGCTGTTTCATAGATGTGAATTATCTTTCCCGTCCTTTTGGC
GTTCTGCTTCCTTTTCTGCACAGGTGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8864:649..2676-

>mRNA_P-wetherbeei_contig8864.1.1 ID=mRNA_P-wetherbeei_contig8864.1.1|Name=mRNA_P-wetherbeei_contig8864.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=546bp|location=Sequence derived from alignment at P-wetherbeei_contig8864:649..2676- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCTCCCACCGACTTGGAAGAGCTGTATTTGACGACGATACGGGCGCC
GGTGGTGATCCTGCTGTTCCTGTCGTTATGGGGCGTGGTGATGATCATCT
TGCAGGCGCTGAGGATAGACTACAACGCCGTCCTCCTGCTGCCCAAGCTG
GAGGAGCGACCGCGGGCGAGCCATCGGCAAGTGCTGGGCACGGCGGGCTC
TCTCCTCGTCGTCTTCCTGACGTGCCTATACGCCGGAGAACGCATGATGC
GGGCGCCGAACATCGCCGTCGGCGCCTTTTACATATTTGCGGGGATGGTG
CTCGCGCTGCAGACACGGCGGTGCATGGGGGATAACGTCATCTTCTTTTC
GCGGGTGTTGTGGCTGGTGGCGTTGCCCGGCCACGACGTCCACTTTGCAG
AGGTGTTTGTGGCCGACGCATTGACGAGCCTAAACAGAGTAATTGCCGAC
GCCGGCTGTGCGCTAACGCTTCTGATGTGGTCATGGACCGGGGGAGACGT
ATATCCGCCAAATCTGAAGGTGAGCGCCTCTTTCTGGAGTGGCTAA
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