mRNA_P-wetherbeei_contig8862.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8862.1.1
Unique NamemRNA_P-wetherbeei_contig8862.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8862.1.1 vs. uniprot
Match: A0A6S9E232_HETAK (Vacuolar protein 8 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9E232_HETAK)

HSP 1 Score: 102 bits (253), Expect = 4.340e-21
Identity = 59/83 (71.08%), Postives = 68/83 (81.93%), Query Frame = 1 
Query:    4 MGSSESKEVERDEIIIEDDEPGADDALTCMLRVNLSRLIMYAESADVKLQRQVAEKLANEAVKLHRQVQIVELGGLKLLLPLT 252
            MG  +SK  E+DEI +ED +   ++ LT +LRV+LSRLI+YAESAD  LQRQVAEKLANEAVK  RQVQIVELGGLKLLLPLT
Sbjct:    1 MGQGDSKHSEKDEIELEDAD--TEEGLTKLLRVHLSRLIVYAESADCHLQRQVAEKLANEAVKPERQVQIVELGGLKLLLPLT 81
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BLAST of mRNA_P-wetherbeei_contig8862.1.1 vs. uniprot
Match: A0A835YNM9_9STRA (Vacuolar protein 8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNM9_9STRA)

HSP 1 Score: 102 bits (253), Expect = 9.580e-21
Identity = 58/83 (69.88%), Postives = 66/83 (79.52%), Query Frame = 1 
Query:    4 MGSSESKEVERDEIIIEDDEPGADDALTCMLRVNLSRLIMYAESADVKLQRQVAEKLANEAVKLHRQVQIVELGGLKLLLPLT 252
            MGS ESK  E+DE+  EDD+ G    L+  LR++LSRLI YAESADV LQRQVAEKLANEAV+  RQVQI ELGGL+LLLPLT
Sbjct:    1 MGSGESKREEKDELEFEDDDEG----LSTALRIHLSRLIAYAESADVSLQRQVAEKLANEAVRPERQVQIAELGGLRLLLPLT 79
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BLAST of mRNA_P-wetherbeei_contig8862.1.1 vs. uniprot
Match: A0A397ACU4_9STRA (Vacuolar protein 8 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397ACU4_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.310e-17
Identity = 54/83 (65.06%), Postives = 60/83 (72.29%), Query Frame = 1 
Query:    4 MGSSESKEVERDEIIIEDDEPGADDALTCMLRVNLSRLIMYAESADVKLQRQVAEKLANEAVKLHRQVQIVELGGLKLLLPLT 252
            MG S SK   +DE   ED + G  DAL    ++NL RLI YA+SAD  LQR+VAEKLANEAVK  RQVQIVEL GLKLLLPLT
Sbjct:    1 MGQSGSKGGSKDEFTYEDSDEGFTDAL----KINLQRLIAYAKSADANLQREVAEKLANEAVKPDRQVQIVELDGLKLLLPLT 79
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BLAST of mRNA_P-wetherbeei_contig8862.1.1 vs. uniprot
Match: A0A7S3H3P5_9STRA (Vacuolar protein 8 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3P5_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.530e-17
Identity = 52/76 (68.42%), Postives = 60/76 (78.95%), Query Frame = 1 
Query:   22 KEVERDEIIIEDDEPGADDALTCMLRVNLSRLIMYAESADVKLQRQVAEKLANEAVKLHRQVQIVELGGLKLLLPL 249
            KE ++ E  IE+D+   D      L+VNLSRLI YAESADVKLQR+VAEKLANEAVK +RQVQIVE GGLKLL+PL
Sbjct:   13 KESKKSEFEIEEDDEEKDSEFVKSLQVNLSRLIAYAESADVKLQREVAEKLANEAVKPNRQVQIVEYGGLKLLVPL 88
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BLAST of mRNA_P-wetherbeei_contig8862.1.1 vs. uniprot
Match: A0A418DV07_9STRA (Vacuolar protein 8 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418DV07_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.750e-17
Identity = 54/83 (65.06%), Postives = 60/83 (72.29%), Query Frame = 1 
Query:    4 MGSSESKEVERDEIIIEDDEPGADDALTCMLRVNLSRLIMYAESADVKLQRQVAEKLANEAVKLHRQVQIVELGGLKLLLPLT 252
            MG S SK   +DE   ED + G  DAL    ++NL RLI YA+SAD  LQR+VAEKLANEAVK  RQVQIVEL GLKLLLPLT
Sbjct:    1 MGQSGSKGGSKDEFTYEDSDEGFTDAL----KINLQRLIAYAKSADANLQREVAEKLANEAVKPDRQVQIVELDGLKLLLPLT 79
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BLAST of mRNA_P-wetherbeei_contig8862.1.1 vs. uniprot
Match: D7G6Y7_ECTSI (Vacuolar protein 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Y7_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 3.030e-17
Identity = 54/83 (65.06%), Postives = 66/83 (79.52%), Query Frame = 1 
Query:    4 MGSSESKEVERDEIIIEDDEPGADDALTCMLRVNLSRLIMYAESADVKLQRQVAEKLANEAVKLHRQVQIVELGGLKLLLPLT 252
            MG+ ESK    D++++E+++   DD+LT  LR NL+RLI YA+SAD  LQRQVAEKLANEAVK  RQ QIV+LGGLKLLLPLT
Sbjct:    1 MGTGESKM--NDDLVLEEED---DDSLTDALRSNLTRLIAYAKSADPSLQRQVAEKLANEAVKPSRQAQIVQLGGLKLLLPLT 78
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BLAST of mRNA_P-wetherbeei_contig8862.1.1 vs. uniprot
Match: A0A5D6Y1Z7_9STRA (Vacuolar protein 8 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1Z7_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 6.520e-17
Identity = 55/83 (66.27%), Postives = 64/83 (77.11%), Query Frame = 1 
Query:    4 MGSSESKEVERDEIIIEDDEPGADDALTCMLRVNLSRLIMYAESADVKLQRQVAEKLANEAVKLHRQVQIVELGGLKLLLPLT 252
            MG++ +K   +DE   E+D   +DDA T  LRVNL RLI+YA+SAD  LQR+VAEKLANEAVK  RQVQIVEL GLKLLLPLT
Sbjct:    1 MGNASAK-GSKDEFTFEEDT--SDDAFTEALRVNLQRLIVYAKSADTSLQREVAEKLANEAVKPDRQVQIVELEGLKLLLPLT 80
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BLAST of mRNA_P-wetherbeei_contig8862.1.1 vs. uniprot
Match: A0A2D4C729_PYTIN (Vacuolar protein 8 n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4C729_PYTIN)

HSP 1 Score: 85.5 bits (210), Expect = 3.320e-15
Identity = 54/83 (65.06%), Postives = 62/83 (74.70%), Query Frame = 1 
Query:    4 MGSSESKEVERDEIIIEDDEPGADDALTCMLRVNLSRLIMYAESADVKLQRQVAEKLANEAVKLHRQVQIVELGGLKLLLPLT 252
            MG++ SK   +DE   ED +   +D  T  LRVNL RLI+YA+SAD  LQR+VAEKLANEAVK  RQVQIVEL GLKLLLPLT
Sbjct:    1 MGTAGSK-GSKDEFTFEDAD---EDTFTEALRVNLQRLIVYAKSADSTLQREVAEKLANEAVKPDRQVQIVELDGLKLLLPLT 79
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BLAST of mRNA_P-wetherbeei_contig8862.1.1 vs. uniprot
Match: A0A7S1TZQ4_9STRA (Vacuolar protein 8 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZQ4_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 8.010e-15
Identity = 52/83 (62.65%), Postives = 64/83 (77.11%), Query Frame = 1 
Query:    4 MGSSESKEVERDEIIIEDDEPGADDALTCMLRVNLSRLIMYAESADVKLQRQVAEKLANEAVKLHRQVQIVELGGLKLLLPLT 252
            MG+  +K+ +  EI  E+DE G  +    ++R  LSRLI+YAES+DV+LQR VAEKLANEAVK  RQVQIVELGGL+LLLPLT
Sbjct:   54 MGNKGAKQTDEWEID-EEDENGISE----VMRTQLSRLIIYAESSDVQLQRDVAEKLANEAVKPARQVQIVELGGLELLLPLT 131
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BLAST of mRNA_P-wetherbeei_contig8862.1.1 vs. uniprot
Match: A0A7S1XQE0_9STRA (Vacuolar protein 8 n=4 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XQE0_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.200e-14
Identity = 52/83 (62.65%), Postives = 64/83 (77.11%), Query Frame = 1 
Query:    4 MGSSESKEVERDEIIIEDDEPGADDALTCMLRVNLSRLIMYAESADVKLQRQVAEKLANEAVKLHRQVQIVELGGLKLLLPLT 252
            MG+  +K+ +  EI  E+DE G  +    ++R  LSRLI+YAES+DV+LQR VAEKLANEAVK  RQVQIVELGGL+LLLPLT
Sbjct:   54 MGNKGAKQTDEWEID-EEDENGISE----VMRTQLSRLIIYAESSDVQLQRDVAEKLANEAVKPARQVQIVELGGLELLLPLT 131
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8862.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6S9E232_HETAK4.340e-2171.08Vacuolar protein 8 n=1 Tax=Heterosigma akashiwo Ta... [more]
A0A835YNM9_9STRA9.580e-2169.88Vacuolar protein 8 n=1 Tax=Tribonema minus TaxID=3... [more]
A0A397ACU4_9STRA2.310e-1765.06Vacuolar protein 8 n=1 Tax=Aphanomyces astaci TaxI... [more]
A0A7S3H3P5_9STRA2.530e-1768.42Vacuolar protein 8 n=1 Tax=Spumella elongata TaxID... [more]
A0A418DV07_9STRA2.750e-1765.06Vacuolar protein 8 n=1 Tax=Aphanomyces astaci TaxI... [more]
D7G6Y7_ECTSI3.030e-1765.06Vacuolar protein 8 n=1 Tax=Ectocarpus siliculosus ... [more]
A0A5D6Y1Z7_9STRA6.520e-1766.27Vacuolar protein 8 n=1 Tax=Pythium brassicum TaxID... [more]
A0A2D4C729_PYTIN3.320e-1565.06Vacuolar protein 8 n=2 Tax=Pythium TaxID=4797 RepI... [more]
A0A7S1TZQ4_9STRA8.010e-1562.65Vacuolar protein 8 n=1 Tax=Phaeomonas parva TaxID=... [more]
A0A7S1XQE0_9STRA2.200e-1462.65Vacuolar protein 8 n=4 Tax=Phaeomonas parva TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8862contigP-wetherbeei_contig8862:232..2335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog65071.PYU1_T006313
PFAMsArm
Model size1213
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons4
Evalue5.2e-19
EggNOG OGsKOG4224@1|root,KOG4224@2759|Eukaryota,1MKAM@121069|Pythiales
Ec32 ortholog descriptionArmadillo
Ec32 orthologEc-01_011740.1
DescriptionArmadillo-like
Cds size867
COG categoryU
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8862.1.1prot_P-wetherbeei_contig8862.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8862 235..1992 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187063.2884045-UTR-P-wetherbeei_contig8862:231..2341683187063.2884045-UTR-P-wetherbeei_contig8862:231..234Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8862 232..234 +
1683187063.3439152-UTR-P-wetherbeei_contig8862:1992..23351683187063.3439152-UTR-P-wetherbeei_contig8862:1992..2335Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8862 1993..2335 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187063.3007512-CDS-P-wetherbeei_contig8862:234..2981683187063.3007512-CDS-P-wetherbeei_contig8862:234..298Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8862 235..298 +
1683187063.3104143-CDS-P-wetherbeei_contig8862:479..7281683187063.3104143-CDS-P-wetherbeei_contig8862:479..728Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8862 480..728 +
1683187063.319624-CDS-P-wetherbeei_contig8862:1104..13501683187063.319624-CDS-P-wetherbeei_contig8862:1104..1350Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8862 1105..1350 +
1683187063.3288212-CDS-P-wetherbeei_contig8862:1684..19921683187063.3288212-CDS-P-wetherbeei_contig8862:1684..1992Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8862 1685..1992 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8862.1.1

>prot_P-wetherbeei_contig8862.1.1 ID=prot_P-wetherbeei_contig8862.1.1|Name=mRNA_P-wetherbeei_contig8862.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=289bp
MGSSESKEVERDEIIIEDDEPGADDALTCMLRVNLSRLIMYAESADVKLQ
RQVAEKLANEAVKLHRQVQIVELGGLKLLLPLTQSPDIEVQRLAAHALAN
LSVNAENQILMAEEGGIEMLVSILRSPHELLQRQASKALANLGVNPYNKV
KIARAGGIPALIKLAGSANETVGVEAVAALANLAVNDDNELEIVRLGGLG
PILDGARSSNVELQSQSARALRNLSVSAANKERIRAGDGIKALRALVASP
NQRISQQAARALANLDQGDAQRQRGQPGGGATTPPAGK*
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mRNA from alignment at P-wetherbeei_contig8862:232..2335+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8862.1.1 ID=mRNA_P-wetherbeei_contig8862.1.1|Name=mRNA_P-wetherbeei_contig8862.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2104bp|location=Sequence derived from alignment at P-wetherbeei_contig8862:232..2335+ (Phaeothamnion wetherbeei SAG_119_79)
AGGATGGGATCCAGCGAGTCGAAGGAGGTTGAAAGGGATGAGATTATCAT
CGAGGATGACGAACCAGGTCAGCGCTGGTTGTCCCTCTCCTCCTATCCCC
TCTCCTCGTTCACCGCTGTCGTTGAAGGCACATAGCACCGAGACTTACTT
CTCACCTCGTTTTGTAACGTCCCTCCCTCACGTCTTAGCACTCCGTATCT
TCCCAAACGAAACCTCTACGGGCTGTCCTCTCGGGCGATGACCTTCAGGG
GCGGATGATGCGCTCACCTGCATGCTGCGCGTGAATCTGTCGCGCCTTAT
CATGTACGCGGAGAGCGCCGACGTGAAGCTGCAGCGGCAGGTGGCCGAAA
AATTGGCCAACGAAGCAGTCAAGCTCCATCGGCAGGTGCAGATTGTCGAG
CTGGGGGGGCTCAAGCTGCTGCTGCCGCTGACGCAGTCGCCAGACATTGA
GGTACAGCGGCTGGCGGCGCACGCCCTCGCTAACCTATCGGTCAATGGTA
AGGAATAATGGTCTCTGCATTTTGCCGTCCTTCTGTTTTTCCCCCCTTGT
AGACTAGGGCCTTTCTTTTCGGGATTTTTGGCCAGCCGTTGCCATTTTTG
TGCTGGACGGGTGGCGTGGTAGCTTGCGTTCTCTCGAAGCCAGGAGCTTC
CCACTGCGCTTATCCTTGCTGCATGTTACACAATACACATTGCCTTGGAT
TGTTGACCATCACTTACTACCTCTCTTCTATTTGTTCTACTGCTTCTGCC
TGCCTCTCTTTCGGGTCGGCTGCGCCGCTCGGTCGTGCGCCGTGCGTGCT
GTGCTGCGCTTCTGCCTTCCGGTGACGGCCTCATGGGACCAAACTACGAC
AACAAACAAACAACAACAAGCAGCCGAAAACCAGATCTTGATGGCGGAGG
AAGGCGGGATCGAGATGTTGGTGAGCATTCTGCGGTCGCCGCACGAGCTG
CTGCAGCGGCAGGCCTCGAAAGCCCTGGCCAACCTAGGCGTGAACCCCTA
CAACAAGGTGAAGATTGCACGGGCCGGCGGCATCCCCGCGCTCATCAAGC
TGGCCGGGTCGGCCAACGAGACCGTCGGGGTGGAGGCCGTCGCCGCCCTC
GCCAATCTCGCCGTCAACGGTGAGCCAGTTATCGGAGGAGGGAGTGGCCG
CGAAAGCGCAGTGGCCGGCGGCCAACACAGAATCTCTTTCCTATTTCTGC
TGTTGGTTCTGTCCGGTCGCTTTGCAGCAGTCATCTTGGAACTCTCAATA
TCTCGTGTGCGCTTCGGCAGGTGTCTTACTTTTCTTTCGTGGTGCCGAGG
CGAATTTATAGGGAGTCTCAACACTGGAACTGCGGACGGGCAGGCGCCTG
GTGCTAACCGCAATCACACCTAGACCTTCACAAGCATTACGATAAGCAAC
GGCATAATCGCAGTGCATCCCAACCGCCCACCACTGCTATCGATGCTCGG
CAGATGACAATGAGCTGGAAATTGTGCGGCTGGGCGGGCTCGGTCCCATC
CTGGACGGGGCCCGCTCATCCAACGTCGAGCTGCAGTCGCAGAGCGCGCG
GGCGCTCCGCAATCTGTCGGTGAGCGCCGCCAACAAGGAGCGGATTCGCG
CCGGCGATGGCATCAAAGCGCTGCGGGCGCTCGTCGCATCGCCCAACCAG
CGCATCAGCCAGCAGGCGGCGCGGGCGCTGGCCAACCTGGACCAAGGCGA
CGCGCAGCGACAGCGGGGCCAGCCGGGGGGCGGCGCGACGACGCCGCCCG
CCGGCAAATGAGGAGAGAACGGAGTTCCTGTAAGGCGAAGATGAGGGGAT
CGATCCACATTAATAAGAGGAGGGTGGGGGCAGCCGTCGTTGGGTTGTCG
GGACATAGTGGGCGCTGTTGGCAGCATCATAAGGCAGTTACAATAAAGGG
GCGGGGAGTGTGATGCAAGGTTCAAGAGGGTTTTAGTAGTGTTATCCGGG
ATAGGGAAGACAACGAGCAGTATTCGCTGATGGCATCACAACAGGTTGTG
ACGCGAGGAGCCGCTTCTTGGCCCCAAGGCCTCCGAATGTCCCGTTAGAG
CGCCGGGCGGGCTTATAGGTGTGCATTTTATTTATTGTGCCCAGCTCCGA
AAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8862:232..2335+

>mRNA_P-wetherbeei_contig8862.1.1 ID=mRNA_P-wetherbeei_contig8862.1.1|Name=mRNA_P-wetherbeei_contig8862.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=867bp|location=Sequence derived from alignment at P-wetherbeei_contig8862:232..2335+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGATCCAGCGAGTCGAAGGAGGTTGAAAGGGATGAGATTATCATCGA
GGATGACGAACCAGGGGCGGATGATGCGCTCACCTGCATGCTGCGCGTGA
ATCTGTCGCGCCTTATCATGTACGCGGAGAGCGCCGACGTGAAGCTGCAG
CGGCAGGTGGCCGAAAAATTGGCCAACGAAGCAGTCAAGCTCCATCGGCA
GGTGCAGATTGTCGAGCTGGGGGGGCTCAAGCTGCTGCTGCCGCTGACGC
AGTCGCCAGACATTGAGGTACAGCGGCTGGCGGCGCACGCCCTCGCTAAC
CTATCGGTCAATGCCGAAAACCAGATCTTGATGGCGGAGGAAGGCGGGAT
CGAGATGTTGGTGAGCATTCTGCGGTCGCCGCACGAGCTGCTGCAGCGGC
AGGCCTCGAAAGCCCTGGCCAACCTAGGCGTGAACCCCTACAACAAGGTG
AAGATTGCACGGGCCGGCGGCATCCCCGCGCTCATCAAGCTGGCCGGGTC
GGCCAACGAGACCGTCGGGGTGGAGGCCGTCGCCGCCCTCGCCAATCTCG
CCGTCAACGATGACAATGAGCTGGAAATTGTGCGGCTGGGCGGGCTCGGT
CCCATCCTGGACGGGGCCCGCTCATCCAACGTCGAGCTGCAGTCGCAGAG
CGCGCGGGCGCTCCGCAATCTGTCGGTGAGCGCCGCCAACAAGGAGCGGA
TTCGCGCCGGCGATGGCATCAAAGCGCTGCGGGCGCTCGTCGCATCGCCC
AACCAGCGCATCAGCCAGCAGGCGGCGCGGGCGCTGGCCAACCTGGACCA
AGGCGACGCGCAGCGACAGCGGGGCCAGCCGGGGGGCGGCGCGACGACGC
CGCCCGCCGGCAAATGA
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