mRNA_P-wetherbeei_contig886.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig886.4.1
Unique NamemRNA_P-wetherbeei_contig886.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig886.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig886contigP-wetherbeei_contig886:1519..5991 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size837
Hectar predicted targeting categoryother localisation
Exons3
Cds size837
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187063.0866961-CDS-P-wetherbeei_contig886:1518..20031683187063.0866961-CDS-P-wetherbeei_contig886:1518..2003Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig886 1519..2003 -
1683187063.1091893-CDS-P-wetherbeei_contig886:3212..33581683187063.1091893-CDS-P-wetherbeei_contig886:3212..3358Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig886 3213..3358 -
1683187063.1219156-CDS-P-wetherbeei_contig886:5785..59911683187063.1219156-CDS-P-wetherbeei_contig886:5785..5991Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig886 5786..5991 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig886.4.1prot_P-wetherbeei_contig886.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig886 1519..5991 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig886.4.1

>prot_P-wetherbeei_contig886.4.1 ID=prot_P-wetherbeei_contig886.4.1|Name=mRNA_P-wetherbeei_contig886.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=279bp
AAATAAAAPSAVGGSSTGIGGGGGGSSGGSGGGGSGGGGGGGSGGGGCDS
GGGSGGGGNKIGRSGSQDTDGGSSDGGGEEDIEEEGGRGGAAAAAAIATA
ATVRGGASAGATGKGGRDGAAKSGTAAAAGGGGGRPGGSSAAATAAVAAG
AAEAAASEGPLSGSKRRATSQAGGSNSGGAGVQAKRAIAHLPAGAVVGSG
SGARHDDSARGSGKKRGGGARDNGVSGTGKRRGGGSGGGGGKVCTPSDAA
AVGVTPHTAALSASPAGTVSESSSPGSQS
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mRNA from alignment at P-wetherbeei_contig886:1519..5991-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig886.4.1 ID=mRNA_P-wetherbeei_contig886.4.1|Name=mRNA_P-wetherbeei_contig886.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=4473bp|location=Sequence derived from alignment at P-wetherbeei_contig886:1519..5991- (Phaeothamnion wetherbeei SAG_119_79)
GCTGCTGCCACAGCAGCTGCCGCTCCTTCTGCTGTTGGTGGGAGCAGCAC
CGGCATCGGCGGCGGCGGAGGCGGCAGCAGCGGCGGCAGCGGAGGCGGCG
GCAGCGGCGGCGGCGGAGGCGGCGGCAGCGGCGGCGGCGGTTGCGATAGC
GGTGGCGGCAGCGGTGGAGGTGGAAATAAAATCGGCAGAAGCGGCAGCCA
GGACACGTTGAAGCGCCGCGGCGAGACGTGCGCTGAGGAGCGTGGCAGCC
GCTCACGGAGCCGCAGCGATGGCTGTGACGACAGCGGCAGCAGCGGCAGC
ACTGACGACTCTGCCGAGCCGCCGCTACCGAAGCATCCGCCGGGCGACAC
CAATAAGCTGCGCAAGCTCATGAAGCGAGCCGGCTGGGTGCAAGCGAACA
ACTTGGTCAAGAACGAAGGGGACTGGCGCTGGTGGCGTCCCGGCACGAGG
AGCTTCGGCCCTTCCTCTAAGATGCCGCGCTTCGCCGAGGCGGTCGCCGG
CGTCCACTTTTTCGGCACGTCCCTCGCCGCACAAGAGTTCGTACGGGCCA
ACTGGGCCAGCGGCGCGTGGAAAAGGCCAATTGACGCGCCTGGTGCCGAG
CCGTGGAAGGAGCTGTGGGCACGGCTGCGTCGCTACAAGTGGACTTCCGC
CTACGCTCCCCGTGGCACGCTCGGCGACGATCGCGAGGTGTACTACCGGC
CTGGTGCCGCCCCCAAGGTGCCCGGGACGGCCGGGGAGCACCACTTTGTC
GGGCAGCTGGCCGTGCGGGCGTTTATCGCGGCGACACTCCACAGCGGCGA
ATGGAGCAAGCGTATCAATCTCGCAGAGGTGGAGGCCGACACCGACACAT
ATGGTGGAGCCGAAGACGCCGCCGACGGCGGCGGCGGCGGTGGCGGCGGC
GACGGCGATGGTGACGACGGCGACGGCGTTAACAACGATGACGGCGATGG
CGGCCAGGAACCGGACGCAGAGCCGCTGCAGCCAGTGCTGCCGACGCTGC
CGTGGGCCTCGCCGCCATCCCGCAGGCGCGGCGGCGACGACGGGTCCGGC
ACCGGCGCGGGCGGGAGCGGCGATGGCAGTGCGTCCGGCGGCAGCGCGCG
CCGCAGCCGTCGCCGCACCGCCGGCAGCAGCAGCGGCGCTGGCGGCGACG
GCAGTCCAGCCGGGGAGGAAGCCGCTGCGGAAGCGCAGCCCGAGGTCCCG
CCGGTGGACGATTCCGAGCTGCTCGCTCTCATGGAGCGGGCGGGCTGGGA
GATCGCGCGGCCTATCGCCGGAGAGACGGACTTTCGCTGGTGGCGTCCTG
GCGCCGGAAGTTTCGGACCGTCCGCTGCGGCCGTCCGGCATGCGGACGCG
GCGGAGGGTGTCCACTACTTCCTCGGCGCGGCCTCCGCGGCGGACTTCGC
GCGGGGGAACTGGGAGGGCGGCGCGTGGAAGCGACCGATCGAGATGCCGC
TGACCGAGCCGTGGCGGGAGCTGTGGGCACGTCTGAGCACGTACAAGTGG
AAGTTCGACTACGCGTCGGGCGCCTCCGTTGGCGATGAATGGGACGTCCA
CTACCGGCCCGGCGCCAGCAAAGCGTTGCCCGGCATGGCCGGACTGCACC
ATTTCGTGGGGCAGTTGGCCGTGCGAGAATTCGTCCACGCCACACTGCAC
AGCGGCGAGTGGAGCAAGCGCGTCGAGCCGATGGAAGTGGACGCGGCTGC
CGTTGGTGGCAGCGGCGGCGGCGGCGGCGACAGCGGCGACGATGGCAGGG
ACCATGACGGCGGCGGCGTGAGCGGCAGCGGTGGCAACAGCGGGAGCGGT
GGCGGCGGCGGCGGCCAGCACGATGGCGGCGGCGGTGTTGGCAGCCGTGG
CGGTGGCAGCCGTGGCGGTGGCAGCCGTGGCAGCGGCGGTTCCGGCGGAT
CACCGTCTTTGCGTCCGCCCCCACTGCCGCCTGGGGCGGACGGTGGGGAC
GGCCGTGGCGCCGGCGGCCTCGGCGGCAGCGCCTCTGTGGGGAGCACCGC
CGGGGACCACCGACTCCGCCGTAGCGGCGCCGACGAGGAGGGCAGTGGCG
CCGGCGCTCGGGAAGCCAGCATAATCACTGCCAGCTCCGGCGGCAGCGGC
GGCGCTGACAGCGGCGGCAGCGCGGAGCCGCTGCCGGCAGATCCGCCGAA
CGATACGCGCGCCTTGCAACGGCTCATGCTGAGGAAGGATGTCGGCTGGC
GCACGCTGGATCGTGTCGGCCGCAAAGTGGACCTCCGCTGGTGGCGTCCT
GGCACGACCACCTTCCGCCCGCTGGCGGCGCGCCACGACGAGGCGAAAGA
GGGCGTCCACTTCTTCCTCGGCGCATCAAGCGCAGAAAACTTTGTGCGGG
AGAACTGGGCGAGCGGCAAGTGGAAGCAGCCGCTCGAGACGCCGCACTCT
GATGATTGGAAGGTGCTCTGGGCGCTGCTGAAGGCCTATGGCTGGAAGTT
CGACTACGCGCGGGTCAATGCCATCGGCGACGACCAGGACGTCTATTACC
GGCCTGGTGCCAGCAAGTCGGGCATGGCTGGGGTCGATCATTTCATCGGC
ACACAGGCGGTGCGGGACTTTGTCTGCGCGACGGTACTGAGCGGCGACTG
GAGCAAGCGCGTCGGTGTGGACGACACCGAGAGCGACGGGGGCAGCAGCG
ATGGCGGCGGGGAGGAGGACATCGAGGAAGAAGGCGGCAGAGGCGGCGCG
GCGGCAGCAGCCGCCATCGCCACGGCTGCCACTGTTCGCGGCGGTGCTTC
CGCCGGCGCTACGGGCAAAGGCGGCAGGGGTGGCGTTGGCGAGAGTAAGG
GTGGTAGCGGCCGCGGCGTCGGTGGCGGCGCATCCTCGGCAGCGTCACCG
CTCCCGGTTCTGCACTCGCCACCGTTGTCCGGGACGCGTTGGGCTGGCAC
CCGTAGCGACCGCGAGCCGGGCGACAGCAACCACAAGCCCGGCAGCACGA
GCCGTGAGCGCCGCGGCAGAAGCGGCGGCGGCGGCGGTGTCGGCGGCGAT
GAGAACCGCTCTGATGATGGCGGCAGCGGCAGCCCATTCGACAACCGTAG
CGCGTGCAGCGGCAGTCCTGCGGCGAGCCATATCGCCCAACGGAACGAGC
GCCGGCGCAGCGATGGCGCTGCTGCGGCGGCGGTGGTGGCAGAAACCGCG
AGCGACGGTTTCGGCGTGCCCGACCAGTGGAAGGACCTGTGGGCGCTTTT
GAGCAGCCACGGGTGGAAGTACGAGACTGGCAGGGGCATCGGTGACGACA
TCGACGTGCACTTCCGGCCAGGCGCCAAGAGGGGGCACCTGGGCACGGAG
AATGTGCATTACTTTGTGGGGCGAGTGGCAACACGGCGGTTTGTTGAGCG
CACGTTTGAGAGCGAAGAATGGGCGGAACCGGTGATGGTGGAGGGCGCTC
CGAAAATCAGCGGCGACGGCGGAGCCCACGGCGGAGCCGGCACTGGCGCT
GCTGCTGCGTCGCCGCCGGCGGCCGGCTCACACCGTTCCGACAGGCGTGG
CGGTGGCAGCCAAGCGGATGACAGCAACGGCAGCACCACGAGCCGCGATC
GCCGCAATGGCGATGGCACCGGCAGCCGCGGCGCTTCTGCCTCCCACTAT
GGGATCAGCCTGGACCCAGCAACATCGGCGTCACGGGCAAGCAGCAGCGC
GATTCGGACCGGCGGCAGCCGCGCTGAGGTCAGTCGTGGCGGAATTGCGG
CTCCGACGGTGGCCGGGACGTCTGCAGCAGTGGTGGCGGCGGCAGGGGGC
GGCCACGCGCCGCTGACTGAGCCCTGGAAAGACCTGTGGTCGACGCTCAG
CAGCCACGGATGGAAGTACGAGACCGGCAAAGGCATCGGCAACGATATCG
ACTTGCACTTTCGGCCCGGAGCCAGCAGGGCGCACCCGGGCACAGAGAAT
GTGCACCACTTTGTGGGGCAGGAGGCGACGCGGCAGTTTGTCCACAGCGC
CATCAGACGCGGCGATTGGAAGAAGCGGGTGGTGCCAGACGGCGCTGCAA
AGAGCGGCACCGCCGCCGCCGCTGGCGGCGGCGGCGGCAGGCCGGGCGGT
TCTTCAGCAGCGGCGACAGCGGCGGTGGCGGCGGGGGCAGCGGAAGCTGC
AGCGTCCGAGGGCCCACTCAGCGGTTCGAAGCGGCGGGCCACCTCGCAGG
CCGGCGGCAGCAATAGCGGCGGCGCCGGTGTGCAGGCAAAACGCGCCATA
GCCCATCTGCCTGCCGGTGCTGTCGTTGGCAGTGGCAGCGGTGCCCGCCA
TGATGACAGCGCTCGCGGCAGCGGCAAGAAGCGGGGCGGCGGCGCCCGAG
ACAACGGGGTCAGTGGCACCGGCAAGAGGCGGGGAGGGGGCAGCGGCGGC
GGCGGCGGCAAGGTCTGCACGCCGAGCGACGCGGCTGCCGTAGGGGTTAC
GCCGCATACCGCTGCGCTGTCGGCGTCCCCCGCGGGGACAGTAAGCGAGT
CTTCGTCGCCGGGCTCCCAAAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig886:1519..5991-

>mRNA_P-wetherbeei_contig886.4.1 ID=mRNA_P-wetherbeei_contig886.4.1|Name=mRNA_P-wetherbeei_contig886.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=837bp|location=Sequence derived from alignment at P-wetherbeei_contig886:1519..5991- (Phaeothamnion wetherbeei SAG_119_79)
GCTGCTGCCACAGCAGCTGCCGCTCCTTCTGCTGTTGGTGGGAGCAGCAC
CGGCATCGGCGGCGGCGGAGGCGGCAGCAGCGGCGGCAGCGGAGGCGGCG
GCAGCGGCGGCGGCGGAGGCGGCGGCAGCGGCGGCGGCGGTTGCGATAGC
GGTGGCGGCAGCGGTGGAGGTGGAAATAAAATCGGCAGAAGCGGCAGCCA
GGACACCGACGGGGGCAGCAGCGATGGCGGCGGGGAGGAGGACATCGAGG
AAGAAGGCGGCAGAGGCGGCGCGGCGGCAGCAGCCGCCATCGCCACGGCT
GCCACTGTTCGCGGCGGTGCTTCCGCCGGCGCTACGGGCAAAGGCGGCAG
GGACGGCGCTGCAAAGAGCGGCACCGCCGCCGCCGCTGGCGGCGGCGGCG
GCAGGCCGGGCGGTTCTTCAGCAGCGGCGACAGCGGCGGTGGCGGCGGGG
GCAGCGGAAGCTGCAGCGTCCGAGGGCCCACTCAGCGGTTCGAAGCGGCG
GGCCACCTCGCAGGCCGGCGGCAGCAATAGCGGCGGCGCCGGTGTGCAGG
CAAAACGCGCCATAGCCCATCTGCCTGCCGGTGCTGTCGTTGGCAGTGGC
AGCGGTGCCCGCCATGATGACAGCGCTCGCGGCAGCGGCAAGAAGCGGGG
CGGCGGCGCCCGAGACAACGGGGTCAGTGGCACCGGCAAGAGGCGGGGAG
GGGGCAGCGGCGGCGGCGGCGGCAAGGTCTGCACGCCGAGCGACGCGGCT
GCCGTAGGGGTTACGCCGCATACCGCTGCGCTGTCGGCGTCCCCCGCGGG
GACAGTAAGCGAGTCTTCGTCGCCGGGCTCCCAAAGC
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