mRNA_P-wetherbeei_contig885.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig885.2.1
Unique NamemRNA_P-wetherbeei_contig885.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig885.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig885contigP-wetherbeei_contig885:7330..8429 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size655
Hectar predicted targeting categoryother localisation
Exons2
Cds size645
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187062.7486098-UTR-P-wetherbeei_contig885:7329..73391683187062.7486098-UTR-P-wetherbeei_contig885:7329..7339Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig885 7330..7339 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187062.7586977-CDS-P-wetherbeei_contig885:7339..75991683187062.7586977-CDS-P-wetherbeei_contig885:7339..7599Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig885 7340..7599 +
1683187062.767264-CDS-P-wetherbeei_contig885:8044..84291683187062.767264-CDS-P-wetherbeei_contig885:8044..8429Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig885 8045..8429 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig885.2.1prot_P-wetherbeei_contig885.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig885 7340..8429 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig885.2.1

>prot_P-wetherbeei_contig885.2.1 ID=prot_P-wetherbeei_contig885.2.1|Name=mRNA_P-wetherbeei_contig885.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=215bp
MTFGDGRCHRDPRPLTTSTMTKQPLSPTTESFNPLGFDFATLKRHSIRRS
RSELKCDQSQWHSPIRNGVDDGRTSDVGGSSVWDSRRSGVSRQQYGSSSR
QVYRVDDPSSSSLASASRGMAGGNKPFRRHGFAAEIATATAATAAAPAMQ
RPSPTAPYSAPRRRGSTGSQTFGSTEGGGRGNAYGGSGSGDGGGGYGGGR
QVDGGQWGLPSARGG
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mRNA from alignment at P-wetherbeei_contig885:7330..8429+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig885.2.1 ID=mRNA_P-wetherbeei_contig885.2.1|Name=mRNA_P-wetherbeei_contig885.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1100bp|location=Sequence derived from alignment at P-wetherbeei_contig885:7330..8429+ (Phaeothamnion wetherbeei SAG_119_79)
CCCTCGCCAAATGACCTTTGGGGACGGGAGGTGTCACAGGGACCCTCGTC
CTCTTACGACATCGACAATGACCAAACAACCTCTCTCCCCGACAACGGAG
AGCTTCAACCCTCTCGGCTTCGATTTTGCGACCTTGAAAAGGCACTCTAT
TCGACGGAGCAGGAGCGAGTTGAAATGCGACCAAAGCCAATGGCATTCCC
CGATCCGCAATGGCGTCGACGACGGGCGTACCAGCGATGTCGGTGGCAGC
AGCGTCTGGGATTCACGAAGGTAAGCGTTGCATGCACTAACGAGGTCTCT
ACGCACAAAGCCAACGAAGACGCTCATAATTCTGAGAAAGCCACCGATGA
GTGTATTTCTCAGCCACCTGGATACTCTTGGATGCCGCGGACCGATTCCC
GCTTCCGCATCACACGTCGATGAGACACGATTGTCGGCCTGTCATAATCC
CCATTATGAATCCGTTAGTCTGTTCCTACATTACTGACTGGAGTTGTGGG
ATCTTGCTGCGGTTAAGGAAACAGGGAAAGAAGGTTGCCTGCCGATTCTA
GAGTCGGCAACAAGCATACACGACTAGAATTTTTTGTCAAACGGCAAACA
TAAGTCGCTAACAAACATCCGCGCATAAATCCAACCCGTTTTTGTTCATG
GTCAATGATATGGTAAACGGAAATATTGACTTTGGCTTCGTATCGCAAAA
ATGTCTCTGTGGCAGGAGTGGGGTTTCTCGCCAACAATACGGCAGCAGTA
GCAGGCAAGTCTATCGCGTCGATGACCCCTCCAGCAGCTCTCTTGCCAGC
GCTTCCCGAGGAATGGCCGGCGGTAATAAGCCTTTCCGACGGCACGGTTT
TGCCGCCGAGATTGCGACCGCAACGGCAGCGACGGCAGCAGCGCCGGCGA
TGCAGCGCCCATCACCAACAGCGCCATATTCGGCGCCACGCCGCCGCGGC
AGCACCGGCAGCCAAACCTTTGGGAGCACTGAGGGCGGAGGCCGCGGCAA
CGCGTACGGCGGCAGCGGCTCTGGCGACGGCGGCGGCGGCTACGGCGGCG
GCCGGCAGGTGGACGGCGGCCAGTGGGGACTGCCGTCGGCGCGGGGGGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig885:7330..8429+

>mRNA_P-wetherbeei_contig885.2.1 ID=mRNA_P-wetherbeei_contig885.2.1|Name=mRNA_P-wetherbeei_contig885.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=645bp|location=Sequence derived from alignment at P-wetherbeei_contig885:7330..8429+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCTTTGGGGACGGGAGGTGTCACAGGGACCCTCGTCCTCTTACGAC
ATCGACAATGACCAAACAACCTCTCTCCCCGACAACGGAGAGCTTCAACC
CTCTCGGCTTCGATTTTGCGACCTTGAAAAGGCACTCTATTCGACGGAGC
AGGAGCGAGTTGAAATGCGACCAAAGCCAATGGCATTCCCCGATCCGCAA
TGGCGTCGACGACGGGCGTACCAGCGATGTCGGTGGCAGCAGCGTCTGGG
ATTCACGAAGGAGTGGGGTTTCTCGCCAACAATACGGCAGCAGTAGCAGG
CAAGTCTATCGCGTCGATGACCCCTCCAGCAGCTCTCTTGCCAGCGCTTC
CCGAGGAATGGCCGGCGGTAATAAGCCTTTCCGACGGCACGGTTTTGCCG
CCGAGATTGCGACCGCAACGGCAGCGACGGCAGCAGCGCCGGCGATGCAG
CGCCCATCACCAACAGCGCCATATTCGGCGCCACGCCGCCGCGGCAGCAC
CGGCAGCCAAACCTTTGGGAGCACTGAGGGCGGAGGCCGCGGCAACGCGT
ACGGCGGCAGCGGCTCTGGCGACGGCGGCGGCGGCTACGGCGGCGGCCGG
CAGGTGGACGGCGGCCAGTGGGGACTGCCGTCGGCGCGGGGGGGG
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