mRNA_P-wetherbeei_contig8828.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8828.1.1
Unique NamemRNA_P-wetherbeei_contig8828.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8828.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8828contigP-wetherbeei_contig8828:596..1776 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size453
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_006120.1
Cds size450
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187061.818301-CDS-P-wetherbeei_contig8828:597..6371683187061.818301-CDS-P-wetherbeei_contig8828:597..637Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8828 598..637 -
1683187061.8281476-CDS-P-wetherbeei_contig8828:1009..11221683187061.8281476-CDS-P-wetherbeei_contig8828:1009..1122Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8828 1010..1122 -
1683187061.8364615-CDS-P-wetherbeei_contig8828:1358..14741683187061.8364615-CDS-P-wetherbeei_contig8828:1358..1474Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8828 1359..1474 -
1683187061.8446908-CDS-P-wetherbeei_contig8828:1595..17761683187061.8446908-CDS-P-wetherbeei_contig8828:1595..1776Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8828 1596..1776 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8828.1.1prot_P-wetherbeei_contig8828.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8828 598..1776 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8828.1.1

>prot_P-wetherbeei_contig8828.1.1 ID=prot_P-wetherbeei_contig8828.1.1|Name=mRNA_P-wetherbeei_contig8828.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=150bp
GTSRPPSRDPLTRSPRMADAKVEEAKGACLRVIEFLERGGLGVQSVSRLI
ALIDQQSYSVQLGLAMPYLNHDELLSLMQSAWEAMATLRLATRKAAYRKV
RNLEADKNTEEEVLRRWLGERDKADREYALAAVALARAQQAVRMCQEGAA
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mRNA from alignment at P-wetherbeei_contig8828:596..1776-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8828.1.1 ID=mRNA_P-wetherbeei_contig8828.1.1|Name=mRNA_P-wetherbeei_contig8828.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1181bp|location=Sequence derived from alignment at P-wetherbeei_contig8828:596..1776- (Phaeothamnion wetherbeei SAG_119_79)
GGAACCTCCAGACCGCCAAGCCGCGATCCCCTAACGAGAAGCCCACGAAT
GGCGGACGCAAAGGTGGAGGAGGCCAAGGGGGCGTGCCTGCGGGTGATCG
AGTTCTTGGAAAGGGGTGGACTGGGAGTGCAGAGCGTCTCGCGCCTCATA
GCGCTGATCGATCAGCAATCGTACTCGGTGCGCCTTCTCTTCGACCGCCA
AAGTCTGCAATTTGCATTCTTGTGACTCTTAAGCCACCCTTCATACATTA
TCTTCTCCATGATTCAAATTCTCTGTGCAGGGAGGGCTTGCGCTCGCGCA
AGAACTGGGACTTGCCATGCCGTATCTCAACCATGACGAGCTGCTCTCCC
TGATGCAGAGCGCATGGGAAGCGATGGCGACGCTCAGGCTCGCCACAAGA
AAAGCGGCCTACAGAAAGGTAAGACGCGGCGATGGTGTCCTTGCTTCCCC
TCTTGCCTGCGGCTGAGGACGAGTAAATCCGGATAGAGGCGAACCTCTGC
CTTGAAATAAAGAGCCTCTACAATACCAGGGAGATCACACGGCTAACCCG
ACGCCATTCAGAGTCTAGCTCTCCTTCCTTGTAGCGAAGGCCGCCAGGTC
GACTCAACTCACCTGAGTGCCTTGCCCCCATCCCATCCTCCCGGCCGGCC
GCAGGTGCGCAACCTGGAGGCGGACAAGAACACGGAGGAGGAAGTCCTGC
GGCGATGGCTCGGCGAGCGCGACAAGGCGGACCGTGAGTACGCCTTGGCG
GCCGTGGCCCTCGCCAGGTGAGTGAAAGGCTGACGGTTAAGATCTCTACG
GTTTCAGAAGTTTCAAGGGCTAAGCATTTCAGGCGTTAAGTTCTCTTGGC
CCTCGCAAGGCGAGAAAGCGTCTGTCCCCGAAGAGGGTGGGTCCACACCA
CTCGCTCAGTCACTGCGAGAGAGGGACAAGTAATCACGAGAGGCAGCAAG
GCTGTCGTCCTCTTCCTTTGCGCGGTTGGGAATCTGTATCATTGACCCGT
CTTTATGAAAGTCGGCGAGCCAACGTGAGCCCTGGGGTGGATAGTAAGTA
TCGCATTGATGGATAGTGGCCAAGGTCAAGCCTCCCCCCTGAACTGCGCA
ACGATCTCTTCGTCGCGCTGCGGCAATTCCTCCTTTCAGGGCCCAGCAAG
CGGTCAGAATGTGCCAAGAAGGCGCCGCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8828:596..1776-

>mRNA_P-wetherbeei_contig8828.1.1 ID=mRNA_P-wetherbeei_contig8828.1.1|Name=mRNA_P-wetherbeei_contig8828.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=450bp|location=Sequence derived from alignment at P-wetherbeei_contig8828:596..1776- (Phaeothamnion wetherbeei SAG_119_79)
GGAACCTCCAGACCGCCAAGCCGCGATCCCCTAACGAGAAGCCCACGAAT
GGCGGACGCAAAGGTGGAGGAGGCCAAGGGGGCGTGCCTGCGGGTGATCG
AGTTCTTGGAAAGGGGTGGACTGGGAGTGCAGAGCGTCTCGCGCCTCATA
GCGCTGATCGATCAGCAATCGTACTCGGTGCAACTGGGACTTGCCATGCC
GTATCTCAACCATGACGAGCTGCTCTCCCTGATGCAGAGCGCATGGGAAG
CGATGGCGACGCTCAGGCTCGCCACAAGAAAAGCGGCCTACAGAAAGGTG
CGCAACCTGGAGGCGGACAAGAACACGGAGGAGGAAGTCCTGCGGCGATG
GCTCGGCGAGCGCGACAAGGCGGACCGTGAGTACGCCTTGGCGGCCGTGG
CCCTCGCCAGGGCCCAGCAAGCGGTCAGAATGTGCCAAGAAGGCGCCGCG
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