mRNA_P-wetherbeei_contig8825.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8825.1.2
Unique NamemRNA_P-wetherbeei_contig8825.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8825.1.2 vs. uniprot
Match: A0A835YLZ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLZ6_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.260e-26
Identity = 54/74 (72.97%), Postives = 61/74 (82.43%), Query Frame = 1
Query:  133 MALTELPEAQKSELIVSLAALLCEDADVAITSENLNSAIEASGNKVPAYWTVLFASMLEKSGGVEKFCGKPGSG 354
            MA  EL E QKSE++VSLAALLCEDA V +++ENLNSA+ ASGNKV  YWT LFAS LEK+GG EKF GKPGSG
Sbjct:    1 MAFAELTEGQKSEMVVSLAALLCEDAGVELSAENLNSAVSASGNKVAPYWTSLFASYLEKAGGCEKFMGKPGSG 74          
BLAST of mRNA_P-wetherbeei_contig8825.1.2 vs. uniprot
Match: A0A7S2UUV6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUV6_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 3.930e-19
Identity = 41/74 (55.41%), Postives = 58/74 (78.38%), Query Frame = 1
Query:  133 MALTELPEAQKSELIVSLAALLCEDADVAITSENLNSAIEASGNKVPAYWTVLFASMLEKSGGVEKFCGKPGSG 354
            MAL++L  A K E++VSLAAL+  D+ V ++++NLN+ + ASGN +  YW+ LFAS LEK+GGV+KFCG PG+G
Sbjct:    1 MALSDLSGAAKEEMVVSLAALVLADSGVDMSADNLNAVVSASGNDIAPYWSTLFASFLEKAGGVDKFCGAPGAG 74          
BLAST of mRNA_P-wetherbeei_contig8825.1.2 vs. uniprot
Match: A0A6V1KRU0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KRU0_HETAK)

HSP 1 Score: 86.7 bits (213), Expect = 7.230e-19
Identity = 44/74 (59.46%), Postives = 56/74 (75.68%), Query Frame = 1
Query:  133 MALTELPEAQKSELIVSLAALLCEDADVAITSENLNSAIEASGNKVPAYWTVLFASMLEKSGGVEKFCGKPGSG 354
            M+L EL  A K EL+VSLA+L+  D+D  +++ENL + I+ASGN V +YWT LFAS LEKS GVEKFC  PG+G
Sbjct:    1 MSLAELSGAAKEELVVSLASLVVADSDADLSAENLEAVIKASGNSVASYWTSLFASFLEKSEGVEKFCAGPGAG 74          
BLAST of mRNA_P-wetherbeei_contig8825.1.2 vs. uniprot
Match: D7FZX8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZX8_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 4.340e-18
Identity = 83/127 (65.35%), Postives = 101/127 (79.53%), Query Frame = 1
Query:  133 MALTELPEAQKSELIVSLAALLCEDADVAITSENLNSAIEASGNKVPAYWTVLFASMLEKSGGVEKFCGKPGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMSMFGEAEAGGGDY 513
            M+L+ELP  QK++++VSLAALL EDA   +T+EN+++ + A+ N+VPAY+  LFA+MLEKS G   FC K  +GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   IDMGGGM MF   + GGGDY
Sbjct:   38 MSLSELPAPQKNDMVVSLAALLLEDAGSVLTAENISAVVAATKNEVPAYYPTLFAAMLEKSEGCAMFC-KMSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---IDMGGGMDMFXXXDEGGGDY 160          
BLAST of mRNA_P-wetherbeei_contig8825.1.2 vs. uniprot
Match: A0A7S3HK71_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HK71_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.470e-13
Identity = 35/66 (53.03%), Postives = 49/66 (74.24%), Query Frame = 1
Query:  157 AQKSELIVSLAALLCEDADVAITSENLNSAIEASGNKVPAYWTVLFASMLEKSGGVEKFCGKPGSG 354
            A K +L+ SLAA++  D+   IT+E+LN+ I ASGN+VPAY+  LFAS +EKSGG++KF   P +G
Sbjct:   10 ADKDQLVTSLAAIVLSDSGADITAESLNAVIAASGNQVPAYYATLFASFIEKSGGLDKFFAGPSAG 75          
BLAST of mRNA_P-wetherbeei_contig8825.1.2 vs. uniprot
Match: A0A7R9Z7E5_9STRA (Hypothetical protein n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z7E5_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.510e-13
Identity = 73/122 (59.84%), Postives = 90/122 (73.77%), Query Frame = 1
Query:  148 LPEAQKSELIVSLAALLCEDADVAITSENLNSAIEASGNKVPAYWTVLFASMLEKSGGVEKFCGKPGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMSMFGEAEAGGGDY 513
            L ++QK EL+ SL+AL+   A    +++ L++   ASGNK+   W  LFAS++EK+GG +KFC  PGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     D+GGGM MFG  +  GGDY
Sbjct:   38 LSDSQKEELVASLSALVVSGAGGECSADALSAVATASGNKLSGAWAALFASVVEKAGGTDKFCAAPGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----ADIGGGMDMFGGDDGDGGDY 155          
BLAST of mRNA_P-wetherbeei_contig8825.1.2 vs. uniprot
Match: A0A6V2PYK3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2PYK3_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 5.960e-12
Identity = 33/70 (47.14%), Postives = 48/70 (68.57%), Query Frame = 1
Query:  139 LTELPEAQKSELIVSLAALLCEDADVAITSENLNSAIEASGNKVPAYWTVLFASMLEKSGGVEKFCGKPG 348
            L++L ++QK EL+ SL+ALL   A   + SE L +   ASGN + A W  LFAS+++K+GG++KFC  PG
Sbjct:    6 LSDLSDSQKQELVASLSALLVGSAGGEVNSETLTAVATASGNDLSAAWAALFASVVDKAGGIDKFCAAPG 75          
BLAST of mRNA_P-wetherbeei_contig8825.1.2 vs. uniprot
Match: A0A2D4BQ02_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BQ02_PYTIN)

HSP 1 Score: 67.8 bits (164), Expect = 1.430e-11
Identity = 38/74 (51.35%), Postives = 49/74 (66.22%), Query Frame = 1
Query:  133 MALTELPEAQKSELIVSLAALLCEDADVAITSENLNSAIEASGNKVPAYWTVLFASMLEKSGGVEKFCGKPGSG 354
            MA  +L ++QK EL  SLA L   DADV I++ENLN A+EAS NKV AY+  LFA ++ +   VEKF   P +G
Sbjct:    1 MAFADLTQSQKDELATSLAVLAVFDADVEISAENLNLALEASNNKVAAYFPQLFADLIGRGLKVEKFLAGPSAG 74          
BLAST of mRNA_P-wetherbeei_contig8825.1.2 vs. uniprot
Match: A0A6H5KQL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQL7_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.500e-11
Identity = 74/108 (68.52%), Postives = 87/108 (80.56%), Query Frame = 1
Query:  172 LIVSLAALLCEDADVAITSENLNSAIEASGNKVPAYWTVLFASMLEKSGGVEKFCGKPGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMSMFGEAE 495
            ++VSLAALL EDA   +T+EN+++ + A+ N+VPAY+  LFA+MLEKS G   FC K  +GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  IDMGGGM MFG  E
Sbjct:    1 MVVSLAALLLEDAGSVLTAENISAVVAATKNEVPAYYPTLFAAMLEKSEGCAMFC-KMSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--IDMGGGMDMFGGGE 105          
BLAST of mRNA_P-wetherbeei_contig8825.1.2 vs. uniprot
Match: A0A7S0QBW6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QBW6_9EUKA)

HSP 1 Score: 66.6 bits (161), Expect = 3.790e-11
Identity = 31/66 (46.97%), Postives = 46/66 (69.70%), Query Frame = 1
Query:  157 AQKSELIVSLAALLCEDADVAITSENLNSAIEASGNKVPAYWTVLFASMLEKSGGVEKFCGKPGSG 354
            A K +L+ SLAA++  D    I+++ +NS + ASGN VPAY+  L+AS +EK+GG+EKF   P +G
Sbjct:   19 ADKDQLVTSLAAIILSDCGADISADAINSVLSASGNTVPAYYPTLYASYIEKAGGLEKFFAGPSAG 84          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8825.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A835YLZ6_9STRA1.260e-2672.97Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2UUV6_9STRA3.930e-1955.41Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1KRU0_HETAK7.230e-1959.46Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D7FZX8_ECTSI4.340e-1865.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3HK71_9STRA1.470e-1353.03Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7R9Z7E5_9STRA1.510e-1359.84Hypothetical protein n=2 Tax=Pseudictyota dubia Ta... [more]
A0A6V2PYK3_9STRA5.960e-1247.14Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A2D4BQ02_PYTIN1.430e-1151.35Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A6H5KQL7_9PHAE1.500e-1168.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0QBW6_9EUKA3.790e-1146.97Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8825contigP-wetherbeei_contig8825:92..1303 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FZX8
PFAMsRibosomal_60s
Model size518
Max annot lvl2759|Eukaryota
KEGG koko:K02942
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
Exons4
Evalue7.12e-19
EggNOG OGs2D6V1@1|root,2S57R@2759|Eukaryota
Cds size516
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187061.7548177-CDS-P-wetherbeei_contig8825:91..3021683187061.7548177-CDS-P-wetherbeei_contig8825:91..302Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8825 92..302 +
1683187061.7652044-CDS-P-wetherbeei_contig8825:473..6201683187061.7652044-CDS-P-wetherbeei_contig8825:473..620Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8825 474..620 +
1683187061.7742393-CDS-P-wetherbeei_contig8825:892..9871683187061.7742393-CDS-P-wetherbeei_contig8825:892..987Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8825 893..987 +
1683187061.789681-CDS-P-wetherbeei_contig8825:1240..13031683187061.789681-CDS-P-wetherbeei_contig8825:1240..1303Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8825 1241..1303 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8825.1.2prot_P-wetherbeei_contig8825.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8825 92..1303 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8825.1.2

>prot_P-wetherbeei_contig8825.1.2 ID=prot_P-wetherbeei_contig8825.1.2|Name=mRNA_P-wetherbeei_contig8825.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=172bp
VDLSGLPLSHFLLPHVGSVSGRGRAAAARLESESPSIQVALLEKMALTEL
PEAQKSELIVSLAALLCEDADVAITSENLNSAIEASGNKVPAYWTVLFAS
MLEKSGGVEKFCGKPGSGGGGGGGGAAAPAAGGAAAAPAAEAKKEEEEEE
EIDMGGGMSMFGEAEAGGGDY*
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mRNA from alignment at P-wetherbeei_contig8825:92..1303+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8825.1.2 ID=mRNA_P-wetherbeei_contig8825.1.2|Name=mRNA_P-wetherbeei_contig8825.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1212bp|location=Sequence derived from alignment at P-wetherbeei_contig8825:92..1303+ (Phaeothamnion wetherbeei SAG_119_79)
GTTGATCTCTCCGGTCTCCCTCTCTCTCACTTTCTTCTTCCCCATGTCGG ATCTGTTTCGGGACGTGGTCGTGCGGCTGCTGCCAGGTTAGAAAGTGAGA GTCCGTCCATTCAGGTTGCCCTACTTGAGAAAATGGCCCTTACTGAGCTC CCCGAAGCGCAAAAGTCTGAGCTCATTGTTTCTCTGGCTGCGCTGCTCTG CGAAGATGCTGGTGAGATTCCTGGCTCAGCTGGGGGCTACGTGTCAACAT GCAACGCCCCCACTCTTCAAAATCGCCACTAGCGGCTGTCCTCGCTGAAA ATGGCTGATTTGGCATGGGGCAAATCGTTTCTCTTCCTGTATCTCCTTAA CCACTTCTTCCTCTTCTTTTTTCCCTCTTCAGACGTTGCCATTACTTCCG AGAACCTGAACTCGGCGATCGAGGCATCAGGCAACAAGGTGCCCGCCTAC TGGACGGTTCTCTTCGCCTCTATGCTGGAGAAGAGCGGAGGTGTCGAGAA GTTTTGCGGAAAGCCCGGCAGCGGAGGAGGTAAGCTGTTTTCCCTTTCCG GTTTCTAAGTATGTCGCCTCTTGTTTCTGCTTATAGTTTATGTTTTGTTT TGATCATCTTACAAGTTTTCAAGTAGTGCTCTCAGTGGTATGTGACATTT GGCTACTTTTCACGTCTCGTGTAGTTGTCATCAATCAACGTATGCCAGGG ATAGCTGGGACAAGGCAGGCCGGCGGTGACGACCTGCCGCGCTAATTCAC TGAATTATCTCGATTTCTGCTGCTTGTGGCAACCCGGCACGGTTCCATCA GGTGGCGGCGGTGGCGGCGCTGCCGCACCTGCGGCCGGCGGAGCAGCTGC CGCTCCCGCGGCGGAGGCCAAGAAAGAGGAGGAAGAGGAGGAGGAGGTGA GACTTTGTTGTCATGGAGCCACCGCAGCGCCATTGTTTGCACCCATTGCA TTACTTCTCCCTCACCCGGTCACTGGCGATATTAATGACTGGCCTGCCTG ATCATGCAGAAATCCTTTTTGCGCGTGCAAATGCGGACCCGTGAGAGACA TATATCCGCGGAGATATTAGAGAGAGTGAAAAGCTGGCGCTGTGTCGCCT CTGACCTCCTTGCTACGCTCGTTCCCATTCAATCTCTTTCCCTTTTCAGA TTGACATGGGCGGCGGGATGTCGATGTTCGGCGAGGCTGAGGCCGGCGGC GGCGACTACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8825:92..1303+

>mRNA_P-wetherbeei_contig8825.1.2 ID=mRNA_P-wetherbeei_contig8825.1.2|Name=mRNA_P-wetherbeei_contig8825.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=516bp|location=Sequence derived from alignment at P-wetherbeei_contig8825:92..1303+ (Phaeothamnion wetherbeei SAG_119_79)
GTTGATCTCTCCGGTCTCCCTCTCTCTCACTTTCTTCTTCCCCATGTCGG
ATCTGTTTCGGGACGTGGTCGTGCGGCTGCTGCCAGGTTAGAAAGTGAGA
GTCCGTCCATTCAGGTTGCCCTACTTGAGAAAATGGCCCTTACTGAGCTC
CCCGAAGCGCAAAAGTCTGAGCTCATTGTTTCTCTGGCTGCGCTGCTCTG
CGAAGATGCTGACGTTGCCATTACTTCCGAGAACCTGAACTCGGCGATCG
AGGCATCAGGCAACAAGGTGCCCGCCTACTGGACGGTTCTCTTCGCCTCT
ATGCTGGAGAAGAGCGGAGGTGTCGAGAAGTTTTGCGGAAAGCCCGGCAG
CGGAGGAGGTGGCGGCGGTGGCGGCGCTGCCGCACCTGCGGCCGGCGGAG
CAGCTGCCGCTCCCGCGGCGGAGGCCAAGAAAGAGGAGGAAGAGGAGGAG
GAGATTGACATGGGCGGCGGGATGTCGATGTTCGGCGAGGCTGAGGCCGG
CGGCGGCGACTACTGA
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