mRNA_P-wetherbeei_contig882.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig882.1.1
Unique NamemRNA_P-wetherbeei_contig882.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig882.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig882contigP-wetherbeei_contig882:669..4257 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog115417.EPrPW00000021216
Model size2616
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.67e-06
EggNOG OGs28PNG@1|root,2QWAI@2759|Eukaryota,1ME8A@121069|Pythiales
DescriptionHeat shock protein, mitochondrial protein import. Source PGD
Cds size1812
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187061.4531393-UTR-P-wetherbeei_contig882:668..14541683187061.4531393-UTR-P-wetherbeei_contig882:668..1454Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig882 669..1454 -
1683187061.483752-UTR-P-wetherbeei_contig882:4239..42571683187061.483752-UTR-P-wetherbeei_contig882:4239..4257Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig882 4240..4257 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187061.464339-CDS-P-wetherbeei_contig882:1454..22981683187061.464339-CDS-P-wetherbeei_contig882:1454..2298Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig882 1455..2298 -
1683187061.473712-CDS-P-wetherbeei_contig882:3271..42391683187061.473712-CDS-P-wetherbeei_contig882:3271..4239Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig882 3272..4239 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig882.1.1prot_P-wetherbeei_contig882.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig882 1455..4239 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig882.1.1

>prot_P-wetherbeei_contig882.1.1 ID=prot_P-wetherbeei_contig882.1.1|Name=mRNA_P-wetherbeei_contig882.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=604bp
MAQAPPAIQTSLETQALPAMQAVLLQLPRTTEAATRHVSPPAQAATRHSS
PPTQSLPQALLPAQALPPPAPAMSPPQAPPPTQTSAPHAPQQVLPVEQPL
PQAPPQLLLLPPPLQRHEQPAPRSQTLKPALKRQRQQQQHGEGQPPPLPP
RDGKTVTFAPMLEPVADDSSNGCFDVDFDDDGEIIGEFSSDEDEDGDVKM
ADVDGLGSVTLRPPRRLRHGELPHVFKFRAGTGGCIVCKTREKRACDGCR
ACVNCATPLRCGNVVLTGALPPVVPSFEDAAAATAVPASTANPSNPATAF
ARAATAVDDGRLSPPPSLGAAARVADTRMARGKRLLAGRMDRAVFAAFQS
GVFDEALGLLASGIDVRFARAEHRETLLHAAAFKGKLDMVEKFICMGADP
SAVDGFGKTPLALAEMAQCEDVVAFLQKVQRGASVGNKKTDGNGGGQQMT
SGMAPKEATTTASSQPAAAADGAAAAGASGAPAAAALRCPEAAPKPVAPP
MSVRAPAPAPPARQSATIPTTAAAVAASAGQAGIGAGWIAPAAARRGVRS
GPHSRGGVEARGSRGSGSGRDGRGCGSRGGGSGGGSGGAVAHGNLQMPGA
GAS*
back to top

mRNA from alignment at P-wetherbeei_contig882:669..4257-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig882.1.1 ID=mRNA_P-wetherbeei_contig882.1.1|Name=mRNA_P-wetherbeei_contig882.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3589bp|location=Sequence derived from alignment at P-wetherbeei_contig882:669..4257- (Phaeothamnion wetherbeei SAG_119_79)
TCGTCGCCCCCGCCACCGATGGCGCAAGCACCGCCAGCGATACAGACATC
GCTGGAGACGCAGGCGCTGCCGGCGATGCAGGCTGTGCTGCTCCAACTGC
CGCGTACGACGGAGGCTGCGACGCGACATGTGTCGCCACCAGCGCAGGCT
GCGACGCGGCATTCGTCGCCACCAACGCAGTCTCTGCCGCAAGCACTGCT
GCCGGCACAGGCTCTACCTCCGCCGGCGCCAGCTATGTCGCCACCGCAAG
CGCCGCCACCAACGCAGACTTCGGCGCCGCATGCACCGCAACAAGTGCTG
CCGGTGGAACAGCCGCTGCCGCAAGCGCCGCCGCAGCTGTTGCTGCTGCC
ACCGCCGCTGCAGCGTCACGAACAGCCGGCGCCTCGATCGCAAACGCTGA
AGCCAGCGCTGAAAAGGCAACGGCAGCAGCAGCAACACGGCGAGGGACAG
CCGCCGCCTCTGCCGCCGAGAGACGGCAAGACGGTCACTTTTGCACCGAT
GCTGGAACCCGTCGCCGATGACAGTTCCAATGGCTGTTTCGACGTCGATT
TCGACGACGACGGCGAGATCATCGGGGAGTTCTCTTCGGACGAGGACGAA
GACGGCGACGTGAAGATGGCGGACGTCGATGGGCTCGGTTCGGTCACGCT
GCGGCCTCCGCGACGGCTCCGGCATGGAGAGCTTCCGCACGTCTTCAAGT
TCCGCGCCGGGACCGGCGGCTGCATTGTGTGCAAGACGCGCGAGAAGCGG
GCATGTGACGGCTGCCGCGCCTGCGTCAACTGCGCCACCCCTCTCCGTTG
CGGCAACGTCGTGCTGACGGGGGCGCTGCCGCCAGTCGTGCCGAGTTTCG
AAGACGCTGCGGCCGCCACAGCCGTTCCCGCCTCCACCGCCAATCCTAGC
AATCCCGCTACCGCCTTCGCCCGCGCCGCCACCGCTGTTGATGACGGTCG
GCTCTCGCCGCCGCCGTCTCTCGGGGCCGCAGCGAGGTACGTTTTTCCAC
CTTCTCTTTCTGGGCGGGCGTCTACTTTGGGAGTTTCTTTTGTTTCGGGA
TGGTGGTGGCTTTCCTCCATGGATTCGAAGGTTCCTTTCCCACATCCTCC
GCTCCAAGTGGACACAGACACACGAACCAACCAACAGCCGAAATTGCCCA
CAGCGTGAAGGTCGGTGTGAAGAAGCCCGAAAGACGAAGCAGAAAAAGCA
GAAGGAAACATACAGCGCGCGGGAAGGATGGCGAAATCGAATGAAAGGGG
TGCAAGAGGTCCGTTTTGGGCCTGTCCTGTGCCCTGCTTGGAACCCTAAG
GCCACGCCCGCAAGTGCTCACGTTCTAGTTTTGCATGCCGGCGGCTCCAA
CCCAACGCCGCGAACGTGCGCAGTCACTGCCTGGAAAGGCGCGACTTCGG
TTCCACCGAAGGGTTCTCCTTCACTCTCCTTATCGCTCCCACCGAAGCTG
TAACATATGCCTGCGGCGCATCGAAGGCAGGGCGAGAGACCTCCTTCCTT
CACCCCTCATCGCAGCTTCTGAAAGCAGCTGATTTGAGGCGCCGCGATCA
AGAGGTTCGATAGCCCTGCTGAATGCCACCCGGGCGGCAACCGGTGCCTC
CTCCTTTCTTGTGAGAGACTGCCGCCTTTCCATATTTGCTGAGCGGCGGC
CTGGAGTGCCCGATGGCGACGGGGAAAGTGGGTAGAAAGTTAAGAAATCT
GGGTTCTCTTCTCCGGCATCGCTCCTTTTGTTTGCCATGTGATACGAAAG
AGCGGCGGACCCATTTCCGGAACTGTTATGTATTATGGAAGGCATCTTGC
CGTTTGCCGTTCACGCGGTTTAGGGATGAGGGTGTGAGTATTCATTTGCC
CGTTCCAACCAGACTCTCTGCTTCTCCCTCTCCCCGTCCTTTCAACTTTC
TTGCTCTCTCGCGGCGCGCATGGACGGCCGGCACCTTGGCTGCGGGGGAA
GGAAAGCAGGGTGGCGGACACGCGCATGGCGCGCGGCAAGCGTCTCCTCG
CCGGACGCATGGACCGTGCCGTTTTCGCCGCCTTCCAATCGGGCGTTTTC
GACGAAGCGCTCGGCCTCCTCGCCAGCGGCATCGACGTGCGTTTCGCCCG
CGCGGAGCACAGAGAGACGCTGCTGCACGCCGCCGCCTTTAAGGGAAAGC
TGGACATGGTGGAGAAATTTATCTGCATGGGTGCGGACCCTTCCGCGGTC
GATGGCTTCGGCAAGACGCCGCTGGCGCTGGCCGAGATGGCTCAGTGCGA
GGACGTGGTCGCCTTCCTCCAGAAAGTGCAGCGCGGCGCCAGTGTCGGCA
ACAAGAAGACGGATGGCAATGGTGGCGGCCAGCAGATGACTAGCGGGATG
GCTCCAAAGGAGGCAACTACGACGGCTTCATCCCAGCCCGCGGCGGCGGC
GGATGGTGCCGCTGCCGCGGGGGCTTCTGGCGCCCCCGCAGCTGCTGCGT
TGCGCTGTCCTGAGGCGGCCCCGAAGCCGGTGGCGCCCCCGATGTCGGTA
CGAGCGCCTGCCCCGGCCCCGCCGGCGCGCCAGTCAGCAACGATCCCGAC
GACGGCGGCGGCAGTGGCAGCCTCAGCAGGGCAAGCCGGCATCGGCGCCG
GCTGGATCGCGCCTGCTGCTGCACGCCGCGGCGTTCGCAGCGGCCCCCAC
AGTCGCGGCGGTGTCGAAGCTCGCGGCAGTCGGGGCAGCGGCAGTGGCCG
CGACGGCCGCGGCTGCGGCAGCAGGGGCGGCGGCAGTGGCGGCGGCAGCG
GCGGCGCTGTGGCGCACGGGAATCTGCAGATGCCTGGGGCAGGAGCGTCG
TGAAGCCGAAGGCGTGGGTGCTGCCACCGACCGCCCCCGCTGCCGCCGCA
CGCAGCCGCCGCTGTCAGCCGCGCACAGCTCAGTCATTTCGGCCGCAGCG
CTTCAACATGCAGTTATAATTCTGCTATCATTGCGTCAATTATCGAGAAC
CACGTGCGGGTGCTGACGACGAGTGACACGGCCGGCGCCAGACGGGCTAC
TGGCTATTGGCCTGTGTATTGCTTTGAAGCTTGGAGCTTCAGGAAGTCCT
AAGCGCCGCTCTCACCGGCCAGTTCAGTCAAGCCGCACTGGAAGTTCGTC
CTGCGCGGGCGCGCAGCCGTTCCATCCCGGCGGCTTTCGTTTATTGAATT
GTTGGTGGGGCAGCCGCTTGCGTATCGTCTTCTTTGTCACTGCCAAGGTG
TGGTTTGAAGCCACAAGCGTCTGGCAGTGGCTTGGAATTCTGCCAGTGGT
GGGCGGCAAATGATAGATAGGAACGAATTTGAGAGCTAGAAGAGAATAAG
GAGACGAGTAGGCAACGGGCGACAAAGGGTGGCCCTGTAGTCAAAGTATG
TGAAGCAATGCCGGAAGTATCTCCAACCCATGCTAGGCTTGCAAGGCGTG
CGTGGTGGAGCATGAACCGAAACCATCTACTTCAAGGCGGTCCTGCTGGC
TGCTGCCTGTTTGACGTTCATCGCAGCTAACCCATAGTACACTTATTCCG
CTCGGCTTGTGTCCTATGCCGATTGGTGCCCGGTTTCCGGGGAGGACACG
GCCAAAATCCTAATACAACTCTAACCACCTTTCTGGGCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig882:669..4257-

>mRNA_P-wetherbeei_contig882.1.1 ID=mRNA_P-wetherbeei_contig882.1.1|Name=mRNA_P-wetherbeei_contig882.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1812bp|location=Sequence derived from alignment at P-wetherbeei_contig882:669..4257- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCAAGCACCGCCAGCGATACAGACATCGCTGGAGACGCAGGCGCT
GCCGGCGATGCAGGCTGTGCTGCTCCAACTGCCGCGTACGACGGAGGCTG
CGACGCGACATGTGTCGCCACCAGCGCAGGCTGCGACGCGGCATTCGTCG
CCACCAACGCAGTCTCTGCCGCAAGCACTGCTGCCGGCACAGGCTCTACC
TCCGCCGGCGCCAGCTATGTCGCCACCGCAAGCGCCGCCACCAACGCAGA
CTTCGGCGCCGCATGCACCGCAACAAGTGCTGCCGGTGGAACAGCCGCTG
CCGCAAGCGCCGCCGCAGCTGTTGCTGCTGCCACCGCCGCTGCAGCGTCA
CGAACAGCCGGCGCCTCGATCGCAAACGCTGAAGCCAGCGCTGAAAAGGC
AACGGCAGCAGCAGCAACACGGCGAGGGACAGCCGCCGCCTCTGCCGCCG
AGAGACGGCAAGACGGTCACTTTTGCACCGATGCTGGAACCCGTCGCCGA
TGACAGTTCCAATGGCTGTTTCGACGTCGATTTCGACGACGACGGCGAGA
TCATCGGGGAGTTCTCTTCGGACGAGGACGAAGACGGCGACGTGAAGATG
GCGGACGTCGATGGGCTCGGTTCGGTCACGCTGCGGCCTCCGCGACGGCT
CCGGCATGGAGAGCTTCCGCACGTCTTCAAGTTCCGCGCCGGGACCGGCG
GCTGCATTGTGTGCAAGACGCGCGAGAAGCGGGCATGTGACGGCTGCCGC
GCCTGCGTCAACTGCGCCACCCCTCTCCGTTGCGGCAACGTCGTGCTGAC
GGGGGCGCTGCCGCCAGTCGTGCCGAGTTTCGAAGACGCTGCGGCCGCCA
CAGCCGTTCCCGCCTCCACCGCCAATCCTAGCAATCCCGCTACCGCCTTC
GCCCGCGCCGCCACCGCTGTTGATGACGGTCGGCTCTCGCCGCCGCCGTC
TCTCGGGGCCGCAGCGAGGGTGGCGGACACGCGCATGGCGCGCGGCAAGC
GTCTCCTCGCCGGACGCATGGACCGTGCCGTTTTCGCCGCCTTCCAATCG
GGCGTTTTCGACGAAGCGCTCGGCCTCCTCGCCAGCGGCATCGACGTGCG
TTTCGCCCGCGCGGAGCACAGAGAGACGCTGCTGCACGCCGCCGCCTTTA
AGGGAAAGCTGGACATGGTGGAGAAATTTATCTGCATGGGTGCGGACCCT
TCCGCGGTCGATGGCTTCGGCAAGACGCCGCTGGCGCTGGCCGAGATGGC
TCAGTGCGAGGACGTGGTCGCCTTCCTCCAGAAAGTGCAGCGCGGCGCCA
GTGTCGGCAACAAGAAGACGGATGGCAATGGTGGCGGCCAGCAGATGACT
AGCGGGATGGCTCCAAAGGAGGCAACTACGACGGCTTCATCCCAGCCCGC
GGCGGCGGCGGATGGTGCCGCTGCCGCGGGGGCTTCTGGCGCCCCCGCAG
CTGCTGCGTTGCGCTGTCCTGAGGCGGCCCCGAAGCCGGTGGCGCCCCCG
ATGTCGGTACGAGCGCCTGCCCCGGCCCCGCCGGCGCGCCAGTCAGCAAC
GATCCCGACGACGGCGGCGGCAGTGGCAGCCTCAGCAGGGCAAGCCGGCA
TCGGCGCCGGCTGGATCGCGCCTGCTGCTGCACGCCGCGGCGTTCGCAGC
GGCCCCCACAGTCGCGGCGGTGTCGAAGCTCGCGGCAGTCGGGGCAGCGG
CAGTGGCCGCGACGGCCGCGGCTGCGGCAGCAGGGGCGGCGGCAGTGGCG
GCGGCAGCGGCGGCGCTGTGGCGCACGGGAATCTGCAGATGCCTGGGGCA
GGAGCGTCGTGA
back to top