mRNA_P-wetherbeei_contig8816.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8816.1.1
Unique NamemRNA_P-wetherbeei_contig8816.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8816.1.1 vs. uniprot
Match: A0A7S2DRZ5_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DRZ5_9STRA)

HSP 1 Score: 136 bits (342), Expect = 2.260e-39
Identity = 56/77 (72.73%), Postives = 65/77 (84.42%), Query Frame = 1 
Query:    1 LAGLTVGAPRRVCQYAFKLYDIVWICKSCQADETCVLCNECFIPALHENHEVFFYHAQAGGCCDCGDPDAWSPAGFC 231
            L+ L+  APR+VCQYAF+  DIVWIC++CQADETCVLCN CF  + HE HEV+FYHAQAGGCCDCGDPDAW+  GFC
Sbjct:    1 LSDLSKRAPRQVCQYAFRKNDIVWICRTCQADETCVLCNACFRDSSHEGHEVYFYHAQAGGCCDCGDPDAWAADGFC 77
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BLAST of mRNA_P-wetherbeei_contig8816.1.1 vs. uniprot
Match: D7G2M8_ECTSI (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2M8_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 6.790e-36
Identity = 57/76 (75.00%), Postives = 61/76 (80.26%), Query Frame = 1 
Query:   10 LTVGAPRRVCQYAFKLYDIVWICKSCQADETCVLCNECFIPALHENHEVFFYHAQAGGCCDCGDPDAWSPAGFCRY 237
            L    PRRVCQYAF   DIVWICK CQADETCVLCN+CF  + HE HEV+FYHAQAGGCCDCGDPDAW   GFCR+
Sbjct:  202 LPADTPRRVCQYAFLKNDIVWICKECQADETCVLCNDCFRSSDHEGHEVYFYHAQAGGCCDCGDPDAWDYRGFCRH 277
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BLAST of mRNA_P-wetherbeei_contig8816.1.1 vs. uniprot
Match: A0A7R9VHK1_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VHK1_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.400e-35
Identity = 52/76 (68.42%), Postives = 64/76 (84.21%), Query Frame = 1 
Query:   10 LTVGA--PRRVCQYAFKLYDIVWICKSCQADETCVLCNECFIPALHENHEVFFYHAQAGGCCDCGDPDAWSPAGFC 231
            L++G+  PRRVCQ+ FK  DIVW+C++CQ+DETCVLC+ C+  + HE H+V FYHAQAGGCCDCGDPDAW PAGFC
Sbjct:  122 LSLGSLIPRRVCQHPFKRNDIVWVCRTCQSDETCVLCHACYSQSDHEGHDVAFYHAQAGGCCDCGDPDAWDPAGFC 197
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BLAST of mRNA_P-wetherbeei_contig8816.1.1 vs. uniprot
Match: A0A6H5JTE4_9PHAE (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTE4_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 5.960e-35
Identity = 56/76 (73.68%), Postives = 60/76 (78.95%), Query Frame = 1 
Query:   10 LTVGAPRRVCQYAFKLYDIVWICKSCQADETCVLCNECFIPALHENHEVFFYHAQAGGCCDCGDPDAWSPAGFCRY 237
            L    PRRVCQYAF   DIVWICK CQADETCVLCN+CF  + HE HEV+FYHAQAGGCCDCGDPDAW   GFC +
Sbjct:  203 LPADTPRRVCQYAFLKNDIVWICKDCQADETCVLCNDCFRSSDHEGHEVYFYHAQAGGCCDCGDPDAWDYRGFCPH 278
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BLAST of mRNA_P-wetherbeei_contig8816.1.1 vs. uniprot
Match: A0A7S1XL72_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XL72_9STRA)

HSP 1 Score: 132 bits (332), Expect = 1.190e-34
Identity = 55/70 (78.57%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:   22 APRRVCQYAFKLYDIVWICKSCQADETCVLCNECFIPALHENHEVFFYHAQAGGCCDCGDPDAWSPAGFC 231
            + RRVCQYAFK  DIVWICK CQADETCVLCN+CFI + HE HEV+FYHAQAGGCCDCGD  AW+PAG C
Sbjct:  114 SERRVCQYAFKRNDIVWICKECQADETCVLCNDCFIDSEHEGHEVYFYHAQAGGCCDCGDQYAWNPAGCC 183
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BLAST of mRNA_P-wetherbeei_contig8816.1.1 vs. uniprot
Match: A0A7S3L202_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L202_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.270e-34
Identity = 51/73 (69.86%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:   19 GAPRRVCQYAFKLYDIVWICKSCQADETCVLCNECFIPALHENHEVFFYHAQAGGCCDCGDPDAWSPAGFCRY 237
              PRRVCQ+ F+  DIVW+C++CQADETCVLC+ CF  + HE H+V FYHAQAGGCCDCGDPDAW PAGFC +
Sbjct:  182 AVPRRVCQHPFRKNDIVWVCRTCQADETCVLCHACFSQSHHEGHDVAFYHAQAGGCCDCGDPDAWDPAGFCPH 254
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BLAST of mRNA_P-wetherbeei_contig8816.1.1 vs. uniprot
Match: A0A7S3KZJ0_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KZJ0_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.340e-33
Identity = 51/73 (69.86%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:   19 GAPRRVCQYAFKLYDIVWICKSCQADETCVLCNECFIPALHENHEVFFYHAQAGGCCDCGDPDAWSPAGFCRY 237
              PRRVCQ+ F+  DIVW+C++CQADETCVLC+ CF  + HE H+V FYHAQAGGCCDCGDPDAW PAGFC +
Sbjct:  182 AVPRRVCQHPFRKNDIVWVCRTCQADETCVLCHACFSQSHHEGHDVAFYHAQAGGCCDCGDPDAWDPAGFCPH 254
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BLAST of mRNA_P-wetherbeei_contig8816.1.1 vs. uniprot
Match: B8C4U6_THAPS (E3 ubiquitin-protein ligase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C4U6_THAPS)

HSP 1 Score: 130 bits (328), Expect = 1.340e-33
Identity = 52/77 (67.53%), Postives = 63/77 (81.82%), Query Frame = 1 
Query:    1 LAGLTVGAPRRVCQYAFKLYDIVWICKSCQADETCVLCNECFIPALHENHEVFFYHAQAGGCCDCGDPDAWSPAGFC 231
            +A L +  PRRVCQ+ FK  DIVW+C++CQ+DETCVLC++CF  + HE H+V FYHAQAGGCCDCGD DAW PAGFC
Sbjct:  501 IASLGLSIPRRVCQHPFKRNDIVWVCRTCQSDETCVLCHDCFSHSNHEGHDVAFYHAQAGGCCDCGDADAWDPAGFC 577
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BLAST of mRNA_P-wetherbeei_contig8816.1.1 vs. uniprot
Match: A0A7S2Y701_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y701_9STRA)

HSP 1 Score: 129 bits (324), Expect = 2.460e-33
Identity = 50/71 (70.42%), Postives = 60/71 (84.51%), Query Frame = 1 
Query:   25 PRRVCQYAFKLYDIVWICKSCQADETCVLCNECFIPALHENHEVFFYHAQAGGCCDCGDPDAWSPAGFCRY 237
            PRRVCQ+ F+  DIVW+C++CQADETCVLC+ C+  + HE H+V FYHAQAGGCCDCGDPDAW PAGFC +
Sbjct:  122 PRRVCQHPFRKNDIVWVCRTCQADETCVLCHNCYSQSDHEGHDVAFYHAQAGGCCDCGDPDAWDPAGFCPH 192
[Close]
BLAST of mRNA_P-wetherbeei_contig8816.1.1 vs. uniprot
Match: A0A448Z6T2_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z6T2_9STRA)

HSP 1 Score: 130 bits (326), Expect = 2.490e-33
Identity = 53/77 (68.83%), Postives = 62/77 (80.52%), Query Frame = 1 
Query:    1 LAGLTVGAPRRVCQYAFKLYDIVWICKSCQADETCVLCNECFIPALHENHEVFFYHAQAGGCCDCGDPDAWSPAGFC 231
            L  L+   PRRVCQ+ FK  DIVW+C++CQADETCVLC+ C+  + HE H+V FYHAQAGGCCDCGDPDAW PAGFC
Sbjct:  239 LESLSRTVPRRVCQHPFKKNDIVWVCRTCQADETCVLCHACYKGSDHEGHDVAFYHAQAGGCCDCGDPDAWDPAGFC 315
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8816.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2DRZ5_9STRA2.260e-3972.73E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Dic... [more]
D7G2M8_ECTSI6.790e-3675.00E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sil... [more]
A0A7R9VHK1_9STRA1.400e-3568.42E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Pse... [more]
A0A6H5JTE4_9PHAE5.960e-3573.68E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp.... [more]
A0A7S1XL72_9STRA1.190e-3478.57E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Pha... [more]
A0A7S3L202_9STRA1.270e-3469.86E3 ubiquitin-protein ligase n=1 Tax=Amphora coffei... [more]
A0A7S3KZJ0_9STRA1.340e-3369.86E3 ubiquitin-protein ligase n=1 Tax=Amphora coffei... [more]
B8C4U6_THAPS1.340e-3367.53E3 ubiquitin-protein ligase n=1 Tax=Thalassiosira ... [more]
A0A7S2Y701_9STRA2.460e-3370.42E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Amp... [more]
A0A448Z6T2_9STRA2.490e-3368.83E3 ubiquitin-protein ligase n=1 Tax=Pseudo-nitzsch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8816contigP-wetherbeei_contig8816:114..592 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G2M8
PFAMsClpS,zf-UBR
Model size237
Max annot lvl2759|Eukaryota
KEGG koko:K10625,ko:K11978
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000151,GO:0000280,GO:0001101,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006310,GO:0006325,GO:0006342,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007140,GO:0007141,GO:0007276,GO:0007283,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009620,GO:0009719,GO:0009725,GO:0009737,GO:0009889,GO:0009890,GO:0009892,GO:0009894,GO:0009966,GO:0009968,GO:0009987,GO:0010029,GO:0010033,GO:0010243,GO:0010468,GO:0010498,GO:0010528,GO:0010529,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0016043,GO:0016458,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016597,GO:0016740,GO:0019216,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0023051,GO:0023057,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031406,GO:0032006,GO:0032007,GO:0032446,GO:0032501,GO:0032504,GO:0032991,GO:0033522,GO:0033993,GO:0034641,GO:0035825,GO:0036094,GO:0036211,GO:0040029,GO:0042221,GO:0043161,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043200,GO:0043201,GO:0043207,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0044703,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048232,GO:0048285,GO:0048519,GO:0048523,GO:0048580,GO:0048583,GO:0048585,GO:0048609,GO:0050789,GO:0050793,GO:0050794,GO:0050832,GO:0050896,GO:0050994,GO:0051171,GO:0051172,GO:0051239,GO:0051252,GO:0051253,GO:0051276,GO:0051321,GO:0051603,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0061630,GO:0061659,GO:0061982,GO:0065007,GO:0070647,GO:0070728,GO:0070887,GO:0071229,GO:0071230,GO:0071233,GO:0071310,GO:0071417,GO:0071495,GO:0071596,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097305,GO:0098542,GO:0140013,GO:0140096,GO:1900140,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902494,GO:1902531,GO:1902532,GO:1902679,GO:1903046,GO:1903506,GO:1903507,GO:1990234,GO:2000026,GO:2000112,GO:2000113,GO:2001141
Exons2
Evalue1.11e-36
EggNOG OGsKOG1139@1|root,KOG1140@1|root,KOG1139@2759|Eukaryota,KOG1140@2759|Eukaryota
EC2.3.2.27
Descriptionubiquitin-dependent protein catabolic process via the N-end rule pathway
Cds size237
COG categoryS
BRITEko00000,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187061.2149692-CDS-P-wetherbeei_contig8816:113..1761683187061.2149692-CDS-P-wetherbeei_contig8816:113..176Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8816 114..176 -
1683187061.2271667-CDS-P-wetherbeei_contig8816:418..5921683187061.2271667-CDS-P-wetherbeei_contig8816:418..592Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8816 419..592 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8816.1.1prot_P-wetherbeei_contig8816.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8816 114..592 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8816.1.1

>prot_P-wetherbeei_contig8816.1.1 ID=prot_P-wetherbeei_contig8816.1.1|Name=mRNA_P-wetherbeei_contig8816.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=79bp
LAGLTVGAPRRVCQYAFKLYDIVWICKSCQADETCVLCNECFIPALHENH
EVFFYHAQAGGCCDCGDPDAWSPAGFCRY
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mRNA from alignment at P-wetherbeei_contig8816:114..592-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8816.1.1 ID=mRNA_P-wetherbeei_contig8816.1.1|Name=mRNA_P-wetherbeei_contig8816.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=479bp|location=Sequence derived from alignment at P-wetherbeei_contig8816:114..592- (Phaeothamnion wetherbeei SAG_119_79)
CTGGCAGGCCTGACAGTCGGCGCACCGCGCCGTGTCTGCCAGTATGCCTT
CAAGCTGTACGACATCGTGTGGATCTGCAAATCATGTCAGGCGGACGAAA
CATGCGTCTTGTGCAATGAGTGCTTCATCCCAGCGCTCCATGAAAACCAC
GAGGTGTTCTTCTACCACGCCCAGGTAGCGTTATTTATGGCATTAAAACA
ATTACGAAATAATGGTGTGTAAGGCTTTACTTTTCCAAATTTTGCTGCTG
AATGTTAGCACGTCAACCTTAGAAACTACCAAAATAGTTTTTCGTCAGCA
GTTTGACCTTAAAAATTGGTGAAAGCGGCGTGCCCAACTCATTTCTTCCA
GCTGATGGGGTCTCCTGCCGTTTCCGACGGTTAATGAATGCCTTGTTGCG
GTTCCCAACTCCACAGGCTGGCGGCTGCTGCGATTGCGGCGATCCTGATG
CCTGGAGCCCCGCCGGTTTCTGCCGGTAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8816:114..592-

>mRNA_P-wetherbeei_contig8816.1.1 ID=mRNA_P-wetherbeei_contig8816.1.1|Name=mRNA_P-wetherbeei_contig8816.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig8816:114..592- (Phaeothamnion wetherbeei SAG_119_79)
CTGGCAGGCCTGACAGTCGGCGCACCGCGCCGTGTCTGCCAGTATGCCTT
CAAGCTGTACGACATCGTGTGGATCTGCAAATCATGTCAGGCGGACGAAA
CATGCGTCTTGTGCAATGAGTGCTTCATCCCAGCGCTCCATGAAAACCAC
GAGGTGTTCTTCTACCACGCCCAGGCTGGCGGCTGCTGCGATTGCGGCGA
TCCTGATGCCTGGAGCCCCGCCGGTTTCTGCCGGTAT
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