mRNA_P-wetherbeei_contig8810.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8810.1.1
Unique NamemRNA_P-wetherbeei_contig8810.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8810.1.1 vs. uniprot
Match: A0A7S0NG07_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0NG07_9EUKA)

HSP 1 Score: 78.6 bits (192), Expect = 1.690e-13
Identity = 65/216 (30.09%), Postives = 99/216 (45.83%), Query Frame = 1 
Query:  169 IVISDGSGGKCALSTKAPRLSKYRLNFCNVFPEEACCLPAHDEWMRNQWAELMSANTP-CINSQGYRAAASALQVVWCFGCSPAQPDYTLANSTASNSTGNSTATELRICKSLVDRI---DLNILGECGMV----VPD-----DRYQLTCGGDAVVVPPRYWPN---ATAFLNDDSGGKPVFFEDTANASYVVVVIDDEAGDETPCLGRDASGASA 768
            +  + G G  CAL+   P+  +Y L FC  + +++CC+P HD   + Q+  L+    P C N   Y     A++  +C GC P QP YT           N   +E+R+CKS VDRI   +     +CG++     PD     D    TCG D ++  PR + +   +T FLN        FF+       ++ V DD +  E       +SGA+A
Sbjct:   23 VASASGQGTTCALTGFEPKEPRY-LKFCQDYNQKSCCIPGHDMENQLQFENLIDGLGPGCKNPMMY----PAIRYYYCLGCDPMQPAYT-----------NDATSEIRVCKSFVDRIWRDNGKEYDDCGVMKSNDCPDKWGDNDFDPYTCGDDLII--PRMYDDTNTSTKFLN--------FFKPPGIEHTIIEVPDDGSQGECWTAKAFSSGAAA 212
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BLAST of mRNA_P-wetherbeei_contig8810.1.1 vs. uniprot
Match: A0A1V9Y8N5_9STRA (Uncharacterized protein n=2 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y8N5_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 3.420e-10
Identity = 37/133 (27.82%), Postives = 64/133 (48.12%), Query Frame = 1 
Query:  241 LNFCNVFPEEACCLPAHDEWMRNQWAELMSANTPCINSQGYRAAASALQVVWCFGCSPAQPDYTLANSTASNSTGNSTATELRICKSLVDRIDLNILGECGMVVPDDRYQLTCGGDAVVVPPRYWPNATAFLN 639
            ++FC  FP+E CCLP HDE++++ +  L+ +   C ++     A + LQ ++C  C P+   Y        N+T  S    L++C++L D +      +CG+    DR  L C     + P   +P  +   N
Sbjct:   45 MSFCTAFPQERCCLPVHDEYVKSTFYALLDSGYICASATN--TAIAHLQTMFCLACDPSMSLYLTP---PRNTTFFSAPQTLKVCRALADAVSPYYFSDCGLTYAGDRNNL-CIPKTAISPNMVFPGCSEGQN 171
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BLAST of mRNA_P-wetherbeei_contig8810.1.1 vs. uniprot
Match: A0A067C9N6_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C9N6_SAPPC)

HSP 1 Score: 55.5 bits (132), Expect = 1.750e-5
Identity = 33/126 (26.19%), Postives = 60/126 (47.62%), Query Frame = 1 
Query:  241 LNFCNVFPEEACCLPAHDEWMRNQWAELMSANTPCINSQGYRAAASALQVVWCFGCSPAQPDYTLANSTASNSTGNSTATELRICKSLVDRIDLNILGECGMVVPDDRYQLTCGGDAVVVPPRYWP 618
            ++FC  F    CC+P HDE++++ +  ++SA + C  +    AA   L+ + C  C+PA   Y    ST  N +  S    L++C +    +  +   +CG+V    R  + C  +  + P   +P
Sbjct:    1 MSFCTAFTNGRCCIPIHDEYIKDTFYSILSAGSICAAAPN--AALVTLKAIQCTACNPAVSLYL---STPRNVSFFSAPQTLKVCAAAAAAVSPHRFNDCGLVYIGSRNSI-CLPNIPIAPSIVFP 120
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8810.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S0NG07_9EUKA1.690e-1330.09Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A1V9Y8N5_9STRA3.420e-1027.82Uncharacterized protein n=2 Tax=Thraustotheca clav... [more]
A0A067C9N6_SAPPC1.750e-526.19Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8810contigP-wetherbeei_contig8810:571..2344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog653948.CCA16218
Model size894
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue2.11e-13
EggNOG OGs2E673@1|root,2SCY3@2759|Eukaryota
Cds size843
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8810.1.1prot_P-wetherbeei_contig8810.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8810 580..2302 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187060.9023848-UTR-P-wetherbeei_contig8810:570..5791683187060.9023848-UTR-P-wetherbeei_contig8810:570..579Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8810 571..579 +
1683187060.9546514-UTR-P-wetherbeei_contig8810:2302..23441683187060.9546514-UTR-P-wetherbeei_contig8810:2302..2344Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8810 2303..2344 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187060.912369-CDS-P-wetherbeei_contig8810:579..8661683187060.912369-CDS-P-wetherbeei_contig8810:579..866Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8810 580..866 +
1683187060.9209352-CDS-P-wetherbeei_contig8810:1015..10941683187060.9209352-CDS-P-wetherbeei_contig8810:1015..1094Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8810 1016..1094 +
1683187060.929138-CDS-P-wetherbeei_contig8810:1282..14201683187060.929138-CDS-P-wetherbeei_contig8810:1282..1420Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8810 1283..1420 +
1683187060.937297-CDS-P-wetherbeei_contig8810:1739..17891683187060.937297-CDS-P-wetherbeei_contig8810:1739..1789Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8810 1740..1789 +
1683187060.9459422-CDS-P-wetherbeei_contig8810:2013..23021683187060.9459422-CDS-P-wetherbeei_contig8810:2013..2302Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8810 2014..2302 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8810.1.1

>prot_P-wetherbeei_contig8810.1.1 ID=prot_P-wetherbeei_contig8810.1.1|Name=mRNA_P-wetherbeei_contig8810.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=281bp
MAASPETSSSNAGCNALRGFFWKAMVRRRKRPRVERAVCFLLSLCLEPSF
GQDIVISDGSGGKCALSTKAPRLSKYRLNFCNVFPEEACCLPAHDEWMRN
QWAELMSANTPCINSQGYRAAASALQVVWCFGCSPAQPDYTLANSTASNS
TGNSTATELRICKSLVDRIDLNILGECGMVVPDDRYQLTCGGDAVVVPPR
YWPNATAFLNDDSGGKPVFFEDTANASYVVVVIDDEAGDETPCLGRDASG
ASAGPWTRRVSLLALLLIAATTVTTLAGVG*
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mRNA from alignment at P-wetherbeei_contig8810:571..2344+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8810.1.1 ID=mRNA_P-wetherbeei_contig8810.1.1|Name=mRNA_P-wetherbeei_contig8810.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1774bp|location=Sequence derived from alignment at P-wetherbeei_contig8810:571..2344+ (Phaeothamnion wetherbeei SAG_119_79)
CTCCCTCAGATGGCTGCGTCGCCTGAGACGTCCTCCTCGAACGCTGGCTG
TAACGCACTGCGCGGCTTTTTTTGGAAGGCTATGGTGCGTAGGCGGAAGC
GCCCGCGAGTGGAGCGCGCAGTCTGTTTCCTGCTCTCCTTGTGCTTAGAG
CCTTCGTTTGGACAGGACATTGTGATTTCTGACGGGAGTGGTGGGAAGTG
CGCCTTGTCGACAAAGGCACCTCGCCTTAGCAAGTACAGATTGAACTTTT
GCAACGTCTTTCCCGAGGAAGCCTGCTGCCTTCCTGCTCACGATGAGTAA
GTGCACTGCTCTCAAAGGTTTGAAGCTTTATCACGGTGCGGCCTGCTCCG
ACGGATGCTTTTATCGTGCGGATTCTTACACCCTTGTGAACTGCGGAGTG
CATAACAGCTGTCTAAGCTACTCTGCTCTCTGCATACTCTTCCAGGTGGA
TGAGAAACCAGTGGGCCGAGCTCATGTCGGCAAACACGCCATGTATCAAC
TCGCAGGGCTACCGCGCCGCTGCGGTGCGTATCTGGTGCTGCTTTCCTTT
GGTTTCTCAGTTTGTTCTGCGTGATGTTCTCTTTCTGGGCTAGGCACAGG
AATGTGTGAACCTGGGACGAACTATCAACTGTCTGTCCTGTCACGCCTTT
TGTGAATTCCGTCTCACCTCTCTGCATACCATTCTCTTTTGACCGACCCT
TCATAACTCCAGTCGGCGCTCCAGGTGGTGTGGTGCTTTGGCTGCAGCCC
TGCGCAGCCAGATTACACTTTGGCGAATTCTACCGCGTCTAATTCCACTG
GCAATTCGACGGCGACGGAGCTGCGGATTTGTAAATCGTTGGTTGACAGG
GTGCGTTGTTTCGAGGGCTTGTCCTAGTTCAATTGTCTCTACCATCGATT
GTGGGATGCGTGAAAAGGTTAGCTGATGCTCTAAGAAGGCGATTTAACTT
AGGTAGGAAACATTCTCTGGTTAGAATTAAATGTCGGAGGTTAAATAATC
GAGGGTTAAGATAGATGCGACCCTCATTTCTCTCCCAGGGGTAGTAGCGT
ACCGCCTTTCCAGCGTACTTACCATTTTTTCTTCCCCTGGCGCCCACACA
TGGTTAAAACACCGTTCATATTATTATTTCGCAACTTGGCATGCTTTTCT
TTGTTGTATCTGCTGGCAGATCGACCTCAACATACTCGGCGAGTGTGGCA
TGGTCGTTCCCGATGACAGGTGCGCAGAGGGAAAATAAGGCGAAGGCGGC
GGCGGCGGCGGCTTCCTCTCTTGCTGGCGGCGCAAGCAACTCGCCGCGAC
GGGTTCCCCTCCCGCCCTAGCGTTGGCGCCGCCATTCTGATCCACCTGTG
TCCTGCGTCGACAGCCTTTCCTGTCGTCACCGTTGCGCCTCGAATTGGTT
CGCCGTCGGTTTTCCCGCTAACCCCCAATCGACATCGAAGCAGGTACCAG
CTGACATGCGGCGGCGACGCGGTGGTGGTGCCGCCGCGGTACTGGCCCAA
TGCGACGGCCTTCCTCAACGACGACAGCGGCGGCAAGCCCGTCTTCTTTG
AGGACACCGCAAACGCATCGTACGTCGTCGTCGTGATCGACGATGAAGCA
GGCGACGAGACGCCGTGCCTCGGGCGGGATGCGAGCGGCGCATCGGCGGG
TCCATGGACCCGGCGGGTGTCGCTGCTGGCCTTGTTGCTCATCGCGGCAA
CGACGGTGACGACGCTGGCCGGCGTTGGATAGAAAGCTTCCAGATTCGCT
AGAATTAAAACACACTTGTTTGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8810:571..2344+

>mRNA_P-wetherbeei_contig8810.1.1 ID=mRNA_P-wetherbeei_contig8810.1.1|Name=mRNA_P-wetherbeei_contig8810.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=843bp|location=Sequence derived from alignment at P-wetherbeei_contig8810:571..2344+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGCGTCGCCTGAGACGTCCTCCTCGAACGCTGGCTGTAACGCACT
GCGCGGCTTTTTTTGGAAGGCTATGGTGCGTAGGCGGAAGCGCCCGCGAG
TGGAGCGCGCAGTCTGTTTCCTGCTCTCCTTGTGCTTAGAGCCTTCGTTT
GGACAGGACATTGTGATTTCTGACGGGAGTGGTGGGAAGTGCGCCTTGTC
GACAAAGGCACCTCGCCTTAGCAAGTACAGATTGAACTTTTGCAACGTCT
TTCCCGAGGAAGCCTGCTGCCTTCCTGCTCACGATGAGTGGATGAGAAAC
CAGTGGGCCGAGCTCATGTCGGCAAACACGCCATGTATCAACTCGCAGGG
CTACCGCGCCGCTGCGTCGGCGCTCCAGGTGGTGTGGTGCTTTGGCTGCA
GCCCTGCGCAGCCAGATTACACTTTGGCGAATTCTACCGCGTCTAATTCC
ACTGGCAATTCGACGGCGACGGAGCTGCGGATTTGTAAATCGTTGGTTGA
CAGGATCGACCTCAACATACTCGGCGAGTGTGGCATGGTCGTTCCCGATG
ACAGGTACCAGCTGACATGCGGCGGCGACGCGGTGGTGGTGCCGCCGCGG
TACTGGCCCAATGCGACGGCCTTCCTCAACGACGACAGCGGCGGCAAGCC
CGTCTTCTTTGAGGACACCGCAAACGCATCGTACGTCGTCGTCGTGATCG
ACGATGAAGCAGGCGACGAGACGCCGTGCCTCGGGCGGGATGCGAGCGGC
GCATCGGCGGGTCCATGGACCCGGCGGGTGTCGCTGCTGGCCTTGTTGCT
CATCGCGGCAACGACGGTGACGACGCTGGCCGGCGTTGGATAG
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