mRNA_P-wetherbeei_contig881.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig881.4.1
Unique NamemRNA_P-wetherbeei_contig881.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig881.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig881contigP-wetherbeei_contig881:6882..7448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size567
Hectar predicted targeting categoryother localisation
Exons1
Cds size348
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187060.847763-UTR-P-wetherbeei_contig881:6881..69851683187060.847763-UTR-P-wetherbeei_contig881:6881..6985Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig881 6882..6985 -
1683187060.8691134-UTR-P-wetherbeei_contig881:7333..74481683187060.8691134-UTR-P-wetherbeei_contig881:7333..7448Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig881 7334..7448 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187060.858962-CDS-P-wetherbeei_contig881:6985..73331683187060.858962-CDS-P-wetherbeei_contig881:6985..7333Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig881 6986..7333 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig881.4.1prot_P-wetherbeei_contig881.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig881 6986..7333 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig881.4.1

>prot_P-wetherbeei_contig881.4.1 ID=prot_P-wetherbeei_contig881.4.1|Name=mRNA_P-wetherbeei_contig881.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=116bp
MSDAKAESPKCVVRGKTVRSLIISSDLVQEILQSAPRRPACASASVLSLW
SSCLTRGARCSTRRWSGVTATASSRSILAPDCLTCWSCHLSDAGAGSPTC
CASQPATRGSLRGGA*
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mRNA from alignment at P-wetherbeei_contig881:6882..7448-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig881.4.1 ID=mRNA_P-wetherbeei_contig881.4.1|Name=mRNA_P-wetherbeei_contig881.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=567bp|location=Sequence derived from alignment at P-wetherbeei_contig881:6882..7448- (Phaeothamnion wetherbeei SAG_119_79)
ATTGGACGCACAGAAAGTCAGGGAGGACCACACATCCCCAAGCATTTTTT
TCTTCGGTGGCTAAGGCCTGCGAGATTTTAACCTCAGACTCTCCACATTC
TACTGTCGATTTCGGATGAGCGACGCAAAGGCGGAGTCGCCGAAGTGCGT
CGTTCGAGGGAAGACAGTGCGATCGTTGATTATTTCGTCAGATCTCGTCC
AGGAGATACTTCAGTCGGCCCCAAGGCGCCCCGCATGCGCCTCGGCGTCG
GTTCTCTCTTTGTGGTCGTCGTGCCTGACGCGGGGTGCCCGTTGCTCTAC
GCGACGTTGGAGCGGCGTGACAGCTACCGCATCGTCAAGGTCGATCTTGG
CTCCTGATTGTCTAACCTGCTGGAGCTGTCACCTCTCCGATGCGGGAGCG
GGTTCACCGACATGCTGTGCATCCCAGCCTGCCACACGGGGATCGCTGAG
GGGGGGAGCATAGTAATGCGGGATGCATTTTCTTGGAAGTCGGGGACGGC
GATGGTTCCGGCTGGCGGTGGCATACGGCGGAACAGGCCTGATGTTTAAT
GCTCGGCAATGCAAAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig881:6882..7448-

>mRNA_P-wetherbeei_contig881.4.1 ID=mRNA_P-wetherbeei_contig881.4.1|Name=mRNA_P-wetherbeei_contig881.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=348bp|location=Sequence derived from alignment at P-wetherbeei_contig881:6882..7448- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGACGCAAAGGCGGAGTCGCCGAAGTGCGTCGTTCGAGGGAAGAC
AGTGCGATCGTTGATTATTTCGTCAGATCTCGTCCAGGAGATACTTCAGT
CGGCCCCAAGGCGCCCCGCATGCGCCTCGGCGTCGGTTCTCTCTTTGTGG
TCGTCGTGCCTGACGCGGGGTGCCCGTTGCTCTACGCGACGTTGGAGCGG
CGTGACAGCTACCGCATCGTCAAGGTCGATCTTGGCTCCTGATTGTCTAA
CCTGCTGGAGCTGTCACCTCTCCGATGCGGGAGCGGGTTCACCGACATGC
TGTGCATCCCAGCCTGCCACACGGGGATCGCTGAGGGGGGGAGCATAG
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