mRNA_P-wetherbeei_contig88.1.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig88.1.3
Unique NamemRNA_P-wetherbeei_contig88.1.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig88.1.3 vs. uniprot
Match: A0A836CE40_9STRA (Matrin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE40_9STRA)

HSP 1 Score: 331 bits (848), Expect = 2.140e-105
Identity = 180/300 (60.00%), Postives = 215/300 (71.67%), Query Frame = 1
Query:    1 AEELLPLGMERLKEALEALELKCGGTLQQRADRLWSVCGVPPDQIDKKLRAK---RKTLGXXXXXXXXXXXXXXXXXXXXXXXXPRTEG---GSSNGAE----LAWQEAWVRALLAVLSDVWDATRRQVEKRQTLTVEEREAEIREEEEGVGAAVPEAGEGXXXXXXDESDDDGPIYNPKNLPLGYDGKPIAYWLYKLHGLGVEYKCEICGDFSYWGRRAFDRHFQEGRHSHGMKCLGIPNTKHFHDITLIQDAQDLYNKIRHTQDLRQFNAEAEEEYEDAEGNVLKRRTFQDLARQGLL 870
            AE+L+PLG++RLKEALEAL LKCGGTLQQRA+RL +V G  P +ID KL AK   +K  G                         +T G   G S+G +     A  EA VRA L  LSDVW+ATR+QVEK+QT TVEER+AEI +EE G    +PE G+       ++SDDDGPIYNP NLPLG+DGKPI +WLYKLHGLGVEYKCEICGDFSYWGRRAFDRHFQE RH+HGM+CLGIPNTKHFHDITLIQDA DLY K++   ++  +  +  EE+ED+EGNVL +RT++DLARQGLL
Sbjct:  251 AEDLMPLGLDRLKEALEALGLKCGGTLQQRAERLMAVKGKKPSEIDPKLLAKGAGQKRNGPPSDGPAAKRQNGNGADAADASGA-KTNGVPNGKSDGGDWRRSTAAAEARVRAFLEALSDVWEATRKQVEKKQTRTVEERDAEIADEEAGT---LPEVGDADE----EDSDDDGPIYNPLNLPLGWDGKPIPFWLYKLHGLGVEYKCEICGDFSYWGRRAFDRHFQEFRHAHGMRCLGIPNTKHFHDITLIQDAMDLYAKLKGKLEVEAWTPDVGEEFEDSEGNVLNKRTYEDLARQGLL 542          
BLAST of mRNA_P-wetherbeei_contig88.1.3 vs. uniprot
Match: D7FUU5_ECTSI (Matrin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUU5_ECTSI)

HSP 1 Score: 312 bits (799), Expect = 4.390e-98
Identity = 183/291 (62.89%), Postives = 219/291 (75.26%), Query Frame = 1
Query:    1 AEELLPLGMERLKEALEALELKCGGTLQQRADRLWSVCGVPPDQIDKKLRAK-RKTLGXXXXXXXXXXXXXXXXXXXXXXXXPRTEGGSSNGAELAWQEAWVRALLAVLSDVWDATRRQVEKRQTLTVEEREAEIREEEEGVGAAVPEAGEGXXXXXXDESDDDGPIYNPKNLPLGYDGKPIAYWLYKLHGLGVEYKCEICGDFSYWGRRAFDRHFQEGRHSHGMKCLGIPNTKHFHDITLIQDAQDLYNKIRHTQDLRQFNAEAEEEYEDAEGNVLKRRTFQDLARQGLL 870
            A+EL  LGM+RLKEAL+A+ LKCGGTL+QRADRL+SV G  P++ID+KL+AK +K   XXXXXX              XXXX           +LA  E  V+ALL V +D  ++T+RQV+K+ T TVEER+ EI+EEE+G   A+PE  E XXXXX    D++GPIYNP NLPLG+DGKPI YWLYKLHGLGVE+KCEICGDFSY GRR FDRHFQE RH+HGM+CLGIPNTKHFHDI LIQDA+DLY KI+ + D  Q+N E  EEYED EGNVL RRT++DLARQGL+
Sbjct:  257 ADELRALGMDRLKEALQAIGLKCGGTLEQRADRLFSVKGKKPEEIDQKLKAKGKKEXXXXXXXXAPGHGADPNANGPAXXXXXXXXXKEERRKQLAALETKVKALLEVQTDTLESTKRQVDKKHTRTVEERDQEIQEEEQG---ALPEFNEXXXXXX----DEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIVLIQDARDLYAKIKDSLDKEQWNPEDNEEYEDGEGNVLNRRTYEDLARQGLM 540          
BLAST of mRNA_P-wetherbeei_contig88.1.3 vs. uniprot
Match: A0A7S3HNG2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNG2_9STRA)

HSP 1 Score: 307 bits (787), Expect = 1.050e-96
Identity = 165/293 (56.31%), Postives = 200/293 (68.26%), Query Frame = 1
Query:    1 AEELLPLGMERLKEALEALELKCGGTLQQRADRLWSVCGVPPDQIDKKLRAKRKTLGXXXXXXXXXXXXXXXXXXXXXXXXPRTEGGSSNGAE---LAWQEAWVRALLAVLSDVWDATRRQVEKRQTLTVEEREAEIREEEEGVGAAVPEAGEGXXXXXXDESDDDGPIYNPKNLPLGYDGKPIAYWLYKLHGLGVEYKCEICGDFSYWGRRAFDRHFQEGRHSHGMKCLGIPNTKHFHDITLIQDAQDLYNKIRHTQDLRQFNAEAEEEYEDAEGNVLKRRTFQDLARQGLL 870
            A EL  LGM+RLKEALEAL LKCGGTLQ RA+RLWSV G  P+ I   L+AK                              R    ++ G E   +AW+E  V+A+  ++S V +AT R  EK+QT T EEREAE+REEE G+ A +P++  G      ++ DDD P+YNP NLPLG+DGKPI YW+YKLHGLGVEYKC+ICGD SYWGRRAFD+HFQE +H+HGM+ LGIPNTKHFHDITLI DA+ LY KIR    + QF  E EEE+ED +GNVL RRT++DLARQGLL
Sbjct:  238 AGELEALGMDRLKEALEALGLKCGGTLQDRANRLWSVRGKKPEDIPANLKAK-----------------------DTGSNKKRKLEAAAKGDEPDSVAWKEYRVKAVCDLMSSVVNATVRHAEKQQTRTAEEREAELREEEFGL-AQLPQSAHGDGTKKGEDDDDDAPVYNPLNLPLGWDGKPIPYWMYKLHGLGVEYKCQICGDHSYWGRRAFDKHFQEWKHAHGMRSLGIPNTKHFHDITLIADAKALYEKIRTGIQVGQFQGEMEEEFEDTQGNVLNRRTYEDLARQGLL 506          
BLAST of mRNA_P-wetherbeei_contig88.1.3 vs. uniprot
Match: A0A812TNG2_SYMMI (SF3A3 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TNG2_SYMMI)

HSP 1 Score: 300 bits (769), Expect = 2.120e-95
Identity = 159/289 (55.02%), Postives = 197/289 (68.17%), Query Frame = 1
Query:    4 EELLPLGMERLKEALEALELKCGGTLQQRADRLWSVCGVPPDQIDKKLRAKRKTLGXXXXXXXXXXXXXXXXXXXXXXXXPRTEGGSSNGAELAWQEAWVRALLAVLSDVWDATRRQVEKRQTLTVEEREAEIREEEEGVGAAVPEAGEGXXXXXXDESDDDGPIYNPKNLPLGYDGKPIAYWLYKLHGLGVEYKCEICGDFSYWGRRAFDRHFQEGRHSHGMKCLGIPNTKHFHDITLIQDAQDLYNKIRHTQDLRQFNAEAEEEYEDAEGNVLKRRTFQDLARQGLL 870
            +EL  LG++RLK A+EAL LKCGGTL  RADRLWSV GV P+ I  KL+AK K  G                             G S   + A  E  +++L ++++++  ATRR  EK+QT T+EE+ A + EEE G    V EA         D+ DD+GP+YNP NLPLG+DGKPI +WLYKLHGLGVE+KCEICG+ SYWGRRAFDRHFQE RH+HGM+CLG+PNTKHFHDITLI+DA  LY+KIR +    QF  + EEE+ED+EGNVL RRT++DLARQGLL
Sbjct:  142 DELEALGLDRLKGAMEALGLKCGGTLSDRADRLWSVRGVKPNDIPDKLKAKAKRAGSAD------------------------NSGDSARKKTALLEYLIQSLCSLMAEIVTATRRHAEKQQTRTLEEKLALLEEEEYGTLPDVEEA--------DDDEDDEGPLYNPLNLPLGWDGKPIPFWLYKLHGLGVEFKCEICGNQSYWGRRAFDRHFQEWRHAHGMRCLGVPNTKHFHDITLIEDALALYSKIRDSLKKEQFVEDVEEEFEDSEGNVLNRRTYEDLARQGLL 398          
BLAST of mRNA_P-wetherbeei_contig88.1.3 vs. uniprot
Match: A0A7S2W3N3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W3N3_9STRA)

HSP 1 Score: 296 bits (758), Expect = 3.290e-92
Identity = 164/294 (55.78%), Postives = 197/294 (67.01%), Query Frame = 1
Query:    1 AEELLPLGMERLKEALEALELKCGGTLQQRADRLWSVCGVPPDQIDKKLRAKRKTLGXXXXXXXXXXXXXXXXXXXXXXXXPRTEGGSSNGAELAWQEAWVRALLAVLSDVWDATRRQVEKRQTLTVEEREAEIREEEEGVGAAVPEAGEGXXXXXXDESD----DDGPIYNPKNLPLGYDGKPIAYWLYKLHGLGVEYKCEICGDFSYWGRRAFDRHFQEGRHSHGMKCLGIPNTKHFHDITLIQDAQDLYNKIRHTQDLRQFNAEAEEEYEDAEGNVLKRRTFQDLARQGLL 870
            A++L  LG++RLKE LEAL +KCGG+L  RA+RL+SV GV    I K L AK                                E G  NG  +A +E  V  ++  L DV +AT+R VEKRQT  VEER AE+ EEE G   A   AGE       DE D    DDGP+YNP NLPLG+DGKPI +WLYKLHGLGVEYKCEICG+ SYWGRRAFDRHFQE RH+HGM+CLGIPNTKHFHDITLI+DA +LY K++ T  + QF+A  EEE+ED+EG+VL R+T++DLARQGLL
Sbjct:  249 AQDLEALGLQRLKEGLEALGMKCGGSLSDRAERLFSVKGVAQKDIPKNLLAKAAK----------------------KRKRDAAETGGDNGRAVAEREFGVGFMVEQLLDVVEATKRHVEKRQTQLVEERAAELEEEEFGT-MADQIAGEDGTGGLDDEEDXXXXDDGPLYNPLNLPLGWDGKPIPFWLYKLHGLGVEYKCEICGNQSYWGRRAFDRHFQEWRHAHGMRCLGIPNTKHFHDITLIEDAINLYEKLKDTIRIEQFDAAQEEEFEDSEGHVLNRKTYEDLARQGLL 519          
BLAST of mRNA_P-wetherbeei_contig88.1.3 vs. uniprot
Match: A0A7S2V2Q3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2Q3_9STRA)

HSP 1 Score: 280 bits (716), Expect = 1.410e-88
Identity = 164/293 (55.97%), Postives = 194/293 (66.21%), Query Frame = 1
Query:    1 AEELLPLGMERLKEALEALELKCGGTLQQRADRLWSVCGVPPDQIDKKLRA---KRKTLGXXXXXXXXXXXXXXXXXXXXXXXXPRTEGGSSNGAELAWQEAWVRALLAVLSDVWDATRRQVEKRQTLTVEEREAEIREEEEGVGAAVPEAGEGXXXXXXDESDDDGPIYNPKNLPLGYDGKPIAYWLYKLHGLGVEYKCEICGDFSYWGRRAFDRHFQEGRHSHGMKCLGIPNTKHFHDITLIQDAQDLYNKIRHTQDLRQFNAEAEEEYEDAEGNVLKRRTFQDLARQGLL 870
            A++L  LGM RLKEALEAL +KCGGTL QRADRL+SV GV  + I  KL A   KRK                            + +    +  E+A  E  + AL   + DV   TR+QVE++QT T+EER         G G A  +    XXXXXX    D+GPIYNP NLPLG+DGKPI YWLYKLHGLGVEYKCEICGD+SY GRRAFDRHFQE RH+HGM+CLGIPNTKHFHDITLI+DA  L++KI+       +NA+ EEEYED+EGNVL RRT++DLARQGLL
Sbjct:   50 ADQLKALGMARLKEALEALGMKCGGTLDQRADRLFSVKGVAKEAIPPKLLANKGKRKR---------------------------QDDHSDGDRKEIALMEFEISALYEQMKDVVMNTRKQVERKQTKTMEERXXXXXXXXXGTGVAAEDE-LAXXXXXXXXXXDEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEYKCEICGDYSYMGRRAFDRHFQEWRHAHGMRCLGIPNTKHFHDITLIEDATALFDKIKDQLAGEMWNADMEEEYEDSEGNVLNRRTYEDLARQGLL 314          
BLAST of mRNA_P-wetherbeei_contig88.1.3 vs. uniprot
Match: A0A7S2HV93_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HV93_9STRA)

HSP 1 Score: 278 bits (712), Expect = 1.880e-85
Identity = 161/297 (54.21%), Postives = 194/297 (65.32%), Query Frame = 1
Query:    1 AEELLPLGMERLKEALEALELKCGGTLQQRADRLWSVCGVPPDQIDKKLRAKRKTLGXXXXXXXXXXXXXXXXXXXXXXXXPRTEGGSSNGAE-------LAWQEAWVRALLAVLSDVWDATRRQVEKRQTLTVEEREAEIREEEEGVGAAVPEAGEGXXXXXXDESDDDGPIYNPKNLPLGYDGKPIAYWLYKLHGLGVEYKCEICGDFSYWGRRAFDRHFQEGRHSHGMKCLGIPNTKHFHDITLIQDAQDLYNKIRHTQDLRQFNAEAEEEYEDAEGNVLKRRTFQDLARQGLL 870
            A+E+  LG+ RLK+   AL LKCGG   +RA+RLW   G+ PDQ   K+ A RK                            R   G S+  E       +A  E  +  L   ++DV DA RR V+K+QT  VEER+AE  EEE G  AA+ +    XXXXXXDE    GP+YNP NLPLG+DGKPI YWLYKLHGLGVEYKCEICG+ SYWGRRAFDRHFQE RH++GM+CL IPNTKHFHDITLI+DA +LY+KI+      QF+A  EEE+ED+EG+VL RRTF+DLARQGLL
Sbjct:  246 AKEIEALGLARLKDGCLALGLKCGGGAGERAERLWRTKGLTPDQYPSKILASRK----------------------------RKRDGKSDDKEASDSRHDVARAEFRISFLCDQMADVLDAPRRYVDKKQTQLVEERDAEFAEEESGALAALDDEEXXXXXXXXDE----GPLYNPLNLPLGWDGKPIPYWLYKLHGLGVEYKCEICGNMSYWGRRAFDRHFQEWRHAYGMRCLKIPNTKHFHDITLIEDATNLYDKIKDQLKQEQFDANQEEEFEDSEGHVLNRRTFEDLARQGLL 510          
BLAST of mRNA_P-wetherbeei_contig88.1.3 vs. uniprot
Match: A0A4D9DC70_9STRA (Matrin-type domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DC70_9STRA)

HSP 1 Score: 274 bits (701), Expect = 2.100e-83
Identity = 160/291 (54.98%), Postives = 195/291 (67.01%), Query Frame = 1
Query:    1 AEELLPLGMERLKEALEALELKCGGTLQQRADRLWSVCGVPPDQIDKKLRAKRKTLGXXXXXXXXXXXXXXXXXXXXXXXXPRTEGGSSNGAELAWQEAWVRALLA-VLSDVWDATRRQVEKRQTLTVEEREAEIREEEEGVGAAVPEAGEGXXXXXXDESDDDGPIYNPKNLPLGYDGKPIAYWLYKLHGLGVEYKCEICGDFSYWGRRAFDRHFQEGRHSHGMKCLGIPNTKHFHDITLIQDAQDLYNKIRHTQDLRQFNAEAEEEYEDAEGNVLKRRTFQDLARQGLL 870
            A+EL  +GM+RLK  L+AL +KCGGTL++RA RL++  G   ++ID KL A     G  X                        +GG     + A  E  +  L+  VL +V +AT++ VEK+QT T EE E E+R+EEEG+   +   G  XXXXXX      GPIYNP NLPLGYDGKPI YWLYKLHGLGVEYKCEICG+ SYWGRRAFDRHFQE RH+HGM+CL IPNTKHFHDIT I+DA  LY++I+       ++AE EEE+ED+EGNVL RRTFQDLARQGLL
Sbjct:  259 AKELEVVGMDRLKAGLKALGMKCGGTLEERAARLFATKGKKKEEIDPKLLAGN---GKKXSKAEGNGPTSNGNGQGVGTDKEGGKGGEDAKKQCARWEFRIDLLVKEVLREVVEATKKFVEKKQTRTKEETETELRQEEEGLLPGLRGEGXXXXXXXXXXXXXXGPIYNPLNLPLGYDGKPIPYWLYKLHGLGVEYKCEICGNHSYWGRRAFDRHFQEWRHAHGMRCLKIPNTKHFHDITTIKDALALYDRIKEQLKGEVYDAEVEEEFEDSEGNVLNRRTFQDLARQGLL 546          
BLAST of mRNA_P-wetherbeei_contig88.1.3 vs. uniprot
Match: D7G993_ECTSI (Matrin-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G993_ECTSI)

HSP 1 Score: 256 bits (653), Expect = 1.320e-80
Identity = 129/190 (67.89%), Postives = 153/190 (80.53%), Query Frame = 1
Query:  301 VRALLAVLSDVWDATRRQVEKRQTLTVEEREAEIREEEEGVGAAVPEAGEGXXXXXXDESDDDGPIYNPKNLPLGYDGKPIAYWLYKLHGLGVEYKCEICGDFSYWGRRAFDRHFQEGRHSHGMKCLGIPNTKHFHDITLIQDAQDLYNKIRHTQDLRQFNAEAEEEYEDAEGNVLKRRTFQDLARQGLL 870
            V+ALL V +D  ++T+RQV+K+ T TVEER+ EI+EEE+G   A+PE  E      X   D++GPIYNP NLPLG+DGKPI YWLYKLHGLGVE+KCEICGDFSY GRR FDRHFQE RH+HGM+CLGIPNTKHFHDI LIQDA+DLY KI+ + D  Q+N E  EEYED EGNVL RRT++DLARQGL+
Sbjct:   26 VKALLEVQTDTLESTKRQVDKKHTRTVEERDQEIQEEEQG---ALPEFNE----EEXXXXDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIVLIQDARDLYAKIKDSLDKEQWNPEDNEEYEDGEGNVLNRRTYEDLARQGLM 208          
BLAST of mRNA_P-wetherbeei_contig88.1.3 vs. uniprot
Match: A0A8J2WUM4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WUM4_9STRA)

HSP 1 Score: 260 bits (664), Expect = 1.900e-78
Identity = 142/289 (49.13%), Postives = 181/289 (62.63%), Query Frame = 1
Query:    4 EELLPLGMERLKEALEALELKCGGTLQQRADRLWSVCGVPPDQIDKKLRAKRKTLGXXXXXXXXXXXXXXXXXXXXXXXXPRTEGGSSNGAELAWQEAWVRALLAVLSDVWDATRRQVEKRQTLTVEEREAEIREEEEGVGAAVPEAGEGXXXXXXDESDDDGPIYNPKNLPLGYDGKPIAYWLYKLHGLGVEYKCEICGDFSYWGRRAFDRHFQEGRHSHGMKCLGIPNTKHFHDITLIQDAQDLYNKIRHTQDLRQFNAEAEEEYEDAEGNVLKRRTFQDLARQGLL 870
            E L  LG++RLK AL+AL +KCGG ++ RA RL+SV GVP D+ID KL+ K++                            R E            +A V ALL  L  V DAT R+ E++ T T +E +AE R+EE G+  A PE  E       DE   D P+YNPKNLPLG+DG+PI YWLYKLHGL  E+KCEICGD SYWGRRAFD+HF E RHSHGM+CL IPN+ HFH +T + DA  L+ +++   +   F AE +EEYED++GNVL R T++DLARQG+L
Sbjct:  242 ESLEALGLDRLKRALQALGMKCGGDVKARAARLFSVRGVPVDKIDAKLKTKKRA---------------------------REEPTVDRKYRTLLNDARVDALLDHLRPVLDATTRRAERKLTRTKDEIDAEARDEEFGIVQAAPEEEESD-----DEDPLDAPLYNPKNLPLGWDGRPIPYWLYKLHGLDQEFKCEICGDASYWGRRAFDQHFNEWRHSHGMRCLRIPNSAHFHGVTKMDDAVALWEQLQERHEAEAFKAERDEEYEDSDGNVLNRATYEDLARQGML 498          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig88.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CE40_9STRA2.140e-10560.00Matrin-type domain-containing protein n=1 Tax=Trib... [more]
D7FUU5_ECTSI4.390e-9862.89Matrin-type domain-containing protein n=2 Tax=Ecto... [more]
A0A7S3HNG2_9STRA1.050e-9656.31Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A812TNG2_SYMMI2.120e-9555.02SF3A3 protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A7S2W3N3_9STRA3.290e-9255.78Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2V2Q3_9STRA1.410e-8855.97Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2HV93_9STRA1.880e-8554.21Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A4D9DC70_9STRA2.100e-8354.98Matrin-type domain-containing protein n=3 Tax=Mono... [more]
D7G993_ECTSI1.320e-8067.89Matrin-type domain-containing protein n=1 Tax=Ecto... [more]
A0A8J2WUM4_9STRA1.900e-7849.13Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig88contigP-wetherbeei_contig88:3..2264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FUU5
Preferred nameSF3A3
PFAMsDUF3449,PRP9_N,SF3A3,SF3a60_bindingd,Telomere_Sde2_2,zf-C2H2_jaz,zf-met
Model size1246
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00443
KEGG koko:K01676,ko:K10777,ko:K12827
KEGG ReactionR00381,R01082
KEGG Pathwayko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko03040,ko03450,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200,map03040,map03450
KEGG ModuleM00009,M00011,M00173,M00352,M00374
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000245,GO:0000375,GO:0000377,GO:0000389,GO:0000395,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0005737,GO:0005829,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009566,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019953,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043900,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0045292,GO:0045595,GO:0045694,GO:0046483,GO:0050789,GO:0050793,GO:0050794,GO:0051239,GO:0051704,GO:0065003,GO:0065007,GO:0070013,GO:0071004,GO:0071010,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1990904,GO:2000026,GO:2000241
Exons4
Evalue6.83e-98
EggNOG OGsCOG5188@1|root,KOG2636@2759|Eukaryota
Ec32 ortholog descriptionDomain of unknown function DUF3449
Ec32 orthologEc-00_011370.1
EC4.2.1.2,6.5.1.1
DescriptionmRNA splicing, via spliceosome
Cds size849
COG categoryA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig88.1.3prot_P-wetherbeei_contig88.1.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig88 27..1891 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187060.2594056-UTR-P-wetherbeei_contig88:2..261683187060.2594056-UTR-P-wetherbeei_contig88:2..26Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig88 3..26 +
1683187060.312591-UTR-P-wetherbeei_contig88:1891..22641683187060.312591-UTR-P-wetherbeei_contig88:1891..2264Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig88 1892..2264 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187060.2737164-CDS-P-wetherbeei_contig88:26..2781683187060.2737164-CDS-P-wetherbeei_contig88:26..278Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig88 27..278 +
1683187060.2828188-CDS-P-wetherbeei_contig88:443..6171683187060.2828188-CDS-P-wetherbeei_contig88:443..617Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig88 444..617 +
1683187060.2917736-CDS-P-wetherbeei_contig88:989..12651683187060.2917736-CDS-P-wetherbeei_contig88:989..1265Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig88 990..1265 +
1683187060.3030918-CDS-P-wetherbeei_contig88:1744..18911683187060.3030918-CDS-P-wetherbeei_contig88:1744..1891Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig88 1745..1891 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig88.1.3

>prot_P-wetherbeei_contig88.1.3 ID=prot_P-wetherbeei_contig88.1.3|Name=mRNA_P-wetherbeei_contig88.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=283bp
MERLKEALEALELKCGGTLQQRADRLWSVCGVPPDQIDKKLRAKRKTLGG
GGGNDVANGGSDGGGGGGGGKKRPRTEGGSSNGAELAWQEAWVRALLAVL
SDVWDATRRQVEKRQTLTVEEREAEIREEEEGVGAAVPEAGEGGDGDGGD
ESDDDGPIYNPKNLPLGYDGKPIAYWLYKLHGLGVEYKCEICGDFSYWGR
RAFDRHFQEGRHSHGMKCLGIPNTKHFHDITLIQDAQDLYNKIRHTQDLR
QFNAEAEEEYEDAEGNVLKRRTFQDLARQGLL*
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mRNA from alignment at P-wetherbeei_contig88:3..2264+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig88.1.3 ID=mRNA_P-wetherbeei_contig88.1.3|Name=mRNA_P-wetherbeei_contig88.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2262bp|location=Sequence derived from alignment at P-wetherbeei_contig88:3..2264+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGAGGAGCTGCTCCCGCTGGGGATGGAGCGGCTGAAGGAGGCGTTGGA GGCGCTGGAGCTCAAGTGCGGCGGCACGCTCCAGCAGCGGGCCGACCGCC TCTGGAGCGTCTGCGGTGTCCCGCCGGATCAGATCGACAAGAAACTGCGG GCGAAGCGGAAGACACTCGGCGGCGGCGGCGGCAACGACGTCGCCAACGG CGGCAGCGACGGCGGCGGCGGGGGGGGGGGCGGGAAAAAACGGCCGCGGA CCGAGGGCGGCAGCAGCAACGGCGCGGTGGACGGCGGCGACGTGGACGCA AACGGCGATGCCGTCTCCTCCACAAACGGTCATGCCGCCGCGAACGGGCA TGCTGATGGAGCAGCAGGCGCATCATCATCAGCAGCGGCCGGAAACGGCG GACATGGCCGCGGTGGTGACGACGGGGGAGACCCGCGGAAGGAGCTGGCG TGGCAGGAGGCGTGGGTGCGGGCGCTGCTGGCGGTGCTGTCGGACGTATG GGACGCGACGCGGCGGCAGGTGGAGAAGCGGCAGACGCTGACGGTGGAGG AGCGCGAGGCGGAGATCCGTGAGGAGGAGGAGGGTGTCGGCGCTGCCGTG CCTGAGGCCGGCGAGGTAAGAAAGAAAGATTTTCAGTTCGTTCTGCATTT CGTTATTGTTCTATTATCCTTTTGTATTGCTCTTCTTCCTTCAACCTTTT TGATAGGAGGCGGGTGTGAGCAATAGTGACGCAGCTGCTTTGCATATCGG GTGGCCGATTGGCTAGCTCACAACTTCTCTTCATATTTTCTTCCGATGGT CTGCTATAGTACAACGCAGCGAAGTTCGGGTCCTTGAGGTCGACCTTGCC AGTTTGAACCCTTCGACGGCTATGTGCTGTTCTTATCACATGAACTCAAC CCCTTCTCTTCGCCTTCCCTACCCTGCATTTCATTCCACGGTTTATTTCC CTATTTCCCGGCGTTTGGCATCACGGCGGGATGGCAGGGCGGGGACGGCG ACGGCGGCGACGAGAGCGACGATGACGGCCCCATCTACAACCCCAAGAAC CTACCGCTGGGCTATGACGGCAAGCCCATCGCCTACTGGCTCTACAAGCT GCATGGGCTCGGCGTCGAGTACAAGTGCGAGATCTGCGGCGACTTCAGCT ACTGGGGCCGCCGCGCCTTCGACCGCCACTTCCAGGAGGGCCGCCACAGC CACGGCATGAAGTGCCTCGGCATCCCCAACACCAAGCACTTCCACGACAT CACCTTGATCCAAGTAAGAATGGACCGCTGCCGGTTTCAGGGGTTGTCGT TTCAGAGTGTCGTTGTCTGTTTTTTTCAGTCGGGAAGGGTCAATGGTGGT CGTGTGATGTAGGAGGAAGTAGTTGCCAGTAAAATGGTTAAAAGCGGGCG CAAATTGATGCCGAGCCGCGGACGATGCGAGTTGGGGGGTGTGGTTGATG GCTGTTTAGAACGTGAGACGGTTTTCGTTTCTTTGCAACATGCAACGGTC GCATTCTTCGGCTTCGCCTTTGAAGTCGACGATTGTTCGGACTTGATGCA TGGAGTTGCCGCCTTTTACTTTGCTGGATCGCCATTATTACCCCTTTCGC ACGGTCCATTACTACCTCCGTTCCCCATTCCCTCCTTTCCCTGCCTTCCC CCTTTTTATCGTTTTTTGTCAATGTAACATTGCTAAACCTGCCGCCGTCG CCGGAACATCTATCAATGGGCGACGATCCGGGTCACTGGCAGGACGCGCA AGATCTGTACAACAAGATTCGGCACACGCAGGACCTGCGGCAGTTCAACG CTGAGGCCGAAGAGGAATACGAAGACGCCGAGGGCAACGTTCTCAAGCGA CGCACCTTCCAGGACCTCGCTCGCCAGGGGCTGCTTTAGACTAGGCTAGT CAGGTGCTGGCTGGGGGCTACTAGTATGCGGCGCTCCAGGGGCTGACTGG CTTTCGAGGGCTGAAGTCTAAGTGCTCTACCAGCTGACCGACTTTCTACG GGCCGCTAGGATGCCCTACGGTGCTTTCTCGGGGCTGGCTGGCTGCTGTT ATAGGGACTGCTCGGGGGACCCCTTATGGGCCCCTCGCGGTTTTCTCTGG CCAGGCTGCTCATTGCAGGATGCGGCGACAGAAGCCACGCCGGGGCCAGG GCCGCCCCATTGTTGCGGCGCGGTCGCTGCGGCGGGTCGCGGCTGACAGA AGAGGGTGCCGACGCGGGAGGGGTGGGTGACGAATCGATTAATGGATGAA AGAAGCCTGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig88:3..2264+

>mRNA_P-wetherbeei_contig88.1.3 ID=mRNA_P-wetherbeei_contig88.1.3|Name=mRNA_P-wetherbeei_contig88.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=849bp|location=Sequence derived from alignment at P-wetherbeei_contig88:3..2264+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGCGGCTGAAGGAGGCGTTGGAGGCGCTGGAGCTCAAGTGCGGCGG
CACGCTCCAGCAGCGGGCCGACCGCCTCTGGAGCGTCTGCGGTGTCCCGC
CGGATCAGATCGACAAGAAACTGCGGGCGAAGCGGAAGACACTCGGCGGC
GGCGGCGGCAACGACGTCGCCAACGGCGGCAGCGACGGCGGCGGCGGGGG
GGGGGGCGGGAAAAAACGGCCGCGGACCGAGGGCGGCAGCAGCAACGGCG
CGGAGCTGGCGTGGCAGGAGGCGTGGGTGCGGGCGCTGCTGGCGGTGCTG
TCGGACGTATGGGACGCGACGCGGCGGCAGGTGGAGAAGCGGCAGACGCT
GACGGTGGAGGAGCGCGAGGCGGAGATCCGTGAGGAGGAGGAGGGTGTCG
GCGCTGCCGTGCCTGAGGCCGGCGAGGGCGGGGACGGCGACGGCGGCGAC
GAGAGCGACGATGACGGCCCCATCTACAACCCCAAGAACCTACCGCTGGG
CTATGACGGCAAGCCCATCGCCTACTGGCTCTACAAGCTGCATGGGCTCG
GCGTCGAGTACAAGTGCGAGATCTGCGGCGACTTCAGCTACTGGGGCCGC
CGCGCCTTCGACCGCCACTTCCAGGAGGGCCGCCACAGCCACGGCATGAA
GTGCCTCGGCATCCCCAACACCAAGCACTTCCACGACATCACCTTGATCC
AAGACGCGCAAGATCTGTACAACAAGATTCGGCACACGCAGGACCTGCGG
CAGTTCAACGCTGAGGCCGAAGAGGAATACGAAGACGCCGAGGGCAACGT
TCTCAAGCGACGCACCTTCCAGGACCTCGCTCGCCAGGGGCTGCTTTAG
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