mRNA_P-wetherbeei_contig8786.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8786.1.1
Unique NamemRNA_P-wetherbeei_contig8786.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8786.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8786contigP-wetherbeei_contig8786:1171..2707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1537
Hectar predicted targeting categoryother localisation
Exons1
Cds size1536
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187059.5683277-CDS-P-wetherbeei_contig8786:1171..27071683187059.5683277-CDS-P-wetherbeei_contig8786:1171..2707Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8786 1172..2707 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8786.1.1prot_P-wetherbeei_contig8786.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8786 1172..2707 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8786.1.1

>prot_P-wetherbeei_contig8786.1.1 ID=prot_P-wetherbeei_contig8786.1.1|Name=mRNA_P-wetherbeei_contig8786.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=512bp
AAAAASSSKHDGGGDDKGRPFDGGGTPDAKAEGDGVGREADCCSCSSGGC
CGGSSSNGGNGNGGGGNSSQDGSRHPADHSSPRRTDADIAPSDEGAPEIV
TSCVVVGPPVCAAAALVLTSERPASLVPGPAVGASTSGQEDSVGREDTLA
PPADTGRSAREGTDFPQGSPRPAHGKAPRRDAGGGGGNGGDDGGREDSGS
VTGSDENMPQQPSPPLLWPPSLPRTSSPPQAAEAVATVGASHDFDFSELD
RGRDWDGEDDRSDGGFPQPDLPEPLEDAADFPMPDEPEHPKEMVVDIVLD
EDGQSGRGGLGVKGYGGGGIDSDGGGLSGGGFGGGSFNGASDVGDDGGRH
DGSGEVNALGGGGSSGSGAGRIGGGSAGVWLSAKRSSDAVASPWATCPKK
RVATAKAKVVNPYENKIPEGPDYASLVGSGGRSGDRSSGGDGGRNCGGKS
NSLSSAAGAAATNKPSVKGNSKPKASTTSRAAGSPPVSRPQAPASFRSGT
GVRGDGGGGGSG
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mRNA from alignment at P-wetherbeei_contig8786:1171..2707-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8786.1.1 ID=mRNA_P-wetherbeei_contig8786.1.1|Name=mRNA_P-wetherbeei_contig8786.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1537bp|location=Sequence derived from alignment at P-wetherbeei_contig8786:1171..2707- (Phaeothamnion wetherbeei SAG_119_79)
GCCGCAGCGGCCGCATCTTCCAGCAAACATGACGGCGGCGGCGACGACAA
AGGCAGGCCTTTCGATGGCGGGGGCACGCCCGATGCCAAGGCGGAGGGTG
ATGGGGTCGGGCGCGAGGCGGACTGCTGCAGTTGCAGCTCTGGCGGCTGC
TGCGGCGGCAGCAGCAGCAACGGCGGCAACGGCAATGGCGGCGGCGGGAA
CAGCAGCCAGGACGGGAGCAGACACCCTGCCGACCACTCGAGCCCGCGCC
GCACTGACGCAGACATAGCGCCCTCTGACGAAGGCGCACCCGAGATTGTG
ACCTCGTGCGTTGTTGTTGGCCCGCCTGTCTGCGCCGCTGCGGCGTTGGT
CCTGACTTCAGAAAGGCCTGCCAGTCTTGTCCCCGGACCCGCCGTGGGTG
CCTCTACGTCAGGCCAAGAGGACAGCGTGGGGCGTGAGGACACGTTGGCG
CCACCCGCCGATACCGGCCGCAGCGCCCGCGAGGGCACGGACTTTCCCCA
GGGCTCGCCGAGGCCAGCGCATGGCAAGGCACCGCGGCGCGACGCCGGCG
GCGGTGGCGGTAACGGCGGCGACGATGGCGGTAGGGAAGACAGCGGCAGC
GTCACTGGATCGGACGAAAATATGCCGCAGCAGCCGTCGCCGCCGCTGCT
GTGGCCGCCGTCGCTGCCGCGGACGTCATCGCCGCCGCAGGCGGCTGAAG
CTGTAGCAACCGTTGGTGCGTCCCACGACTTCGACTTTAGCGAACTGGAT
CGCGGGAGGGACTGGGACGGAGAGGACGATCGCAGCGACGGCGGATTTCC
TCAGCCGGACCTGCCGGAGCCGCTGGAGGACGCGGCCGACTTCCCCATGC
CGGATGAGCCCGAGCACCCGAAGGAGATGGTGGTTGACATCGTTTTGGAC
GAGGACGGGCAGAGCGGCCGCGGCGGCCTCGGCGTTAAGGGCTACGGCGG
CGGGGGCATTGATAGCGACGGCGGTGGTCTCAGCGGCGGCGGCTTTGGCG
GCGGCAGCTTTAACGGCGCCAGCGACGTCGGCGATGATGGGGGCAGACAT
GACGGCAGTGGCGAAGTCAATGCTCTTGGCGGCGGCGGCAGCAGCGGCAG
CGGCGCGGGGCGGATCGGTGGCGGGTCTGCTGGCGTTTGGCTGAGCGCCA
AGCGGAGCAGCGACGCCGTTGCCTCCCCTTGGGCCACGTGCCCCAAGAAG
AGGGTGGCGACGGCGAAGGCAAAAGTGGTCAACCCGTACGAGAACAAGAT
CCCTGAGGGTCCCGATTACGCAAGCCTCGTGGGTTCCGGTGGCCGCAGCG
GCGATCGCAGCAGTGGCGGCGACGGCGGCCGCAACTGCGGAGGCAAGTCG
AACTCGCTGAGCTCTGCAGCCGGTGCAGCTGCGACGAATAAGCCGTCGGT
AAAAGGCAACAGTAAGCCGAAAGCGTCCACGACGTCTCGAGCCGCGGGGT
CGCCGCCGGTGAGCCGTCCCCAAGCGCCAGCAAGCTTTCGATCCGGCACA
GGAGTGCGCGGCGACGGCGGTGGCGGCGGCAGCGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8786:1171..2707-

>mRNA_P-wetherbeei_contig8786.1.1 ID=mRNA_P-wetherbeei_contig8786.1.1|Name=mRNA_P-wetherbeei_contig8786.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1536bp|location=Sequence derived from alignment at P-wetherbeei_contig8786:1171..2707- (Phaeothamnion wetherbeei SAG_119_79)
GCCGCAGCGGCCGCATCTTCCAGCAAACATGACGGCGGCGGCGACGACAA
AGGCAGGCCTTTCGATGGCGGGGGCACGCCCGATGCCAAGGCGGAGGGTG
ATGGGGTCGGGCGCGAGGCGGACTGCTGCAGTTGCAGCTCTGGCGGCTGC
TGCGGCGGCAGCAGCAGCAACGGCGGCAACGGCAATGGCGGCGGCGGGAA
CAGCAGCCAGGACGGGAGCAGACACCCTGCCGACCACTCGAGCCCGCGCC
GCACTGACGCAGACATAGCGCCCTCTGACGAAGGCGCACCCGAGATTGTG
ACCTCGTGCGTTGTTGTTGGCCCGCCTGTCTGCGCCGCTGCGGCGTTGGT
CCTGACTTCAGAAAGGCCTGCCAGTCTTGTCCCCGGACCCGCCGTGGGTG
CCTCTACGTCAGGCCAAGAGGACAGCGTGGGGCGTGAGGACACGTTGGCG
CCACCCGCCGATACCGGCCGCAGCGCCCGCGAGGGCACGGACTTTCCCCA
GGGCTCGCCGAGGCCAGCGCATGGCAAGGCACCGCGGCGCGACGCCGGCG
GCGGTGGCGGTAACGGCGGCGACGATGGCGGTAGGGAAGACAGCGGCAGC
GTCACTGGATCGGACGAAAATATGCCGCAGCAGCCGTCGCCGCCGCTGCT
GTGGCCGCCGTCGCTGCCGCGGACGTCATCGCCGCCGCAGGCGGCTGAAG
CTGTAGCAACCGTTGGTGCGTCCCACGACTTCGACTTTAGCGAACTGGAT
CGCGGGAGGGACTGGGACGGAGAGGACGATCGCAGCGACGGCGGATTTCC
TCAGCCGGACCTGCCGGAGCCGCTGGAGGACGCGGCCGACTTCCCCATGC
CGGATGAGCCCGAGCACCCGAAGGAGATGGTGGTTGACATCGTTTTGGAC
GAGGACGGGCAGAGCGGCCGCGGCGGCCTCGGCGTTAAGGGCTACGGCGG
CGGGGGCATTGATAGCGACGGCGGTGGTCTCAGCGGCGGCGGCTTTGGCG
GCGGCAGCTTTAACGGCGCCAGCGACGTCGGCGATGATGGGGGCAGACAT
GACGGCAGTGGCGAAGTCAATGCTCTTGGCGGCGGCGGCAGCAGCGGCAG
CGGCGCGGGGCGGATCGGTGGCGGGTCTGCTGGCGTTTGGCTGAGCGCCA
AGCGGAGCAGCGACGCCGTTGCCTCCCCTTGGGCCACGTGCCCCAAGAAG
AGGGTGGCGACGGCGAAGGCAAAAGTGGTCAACCCGTACGAGAACAAGAT
CCCTGAGGGTCCCGATTACGCAAGCCTCGTGGGTTCCGGTGGCCGCAGCG
GCGATCGCAGCAGTGGCGGCGACGGCGGCCGCAACTGCGGAGGCAAGTCG
AACTCGCTGAGCTCTGCAGCCGGTGCAGCTGCGACGAATAAGCCGTCGGT
AAAAGGCAACAGTAAGCCGAAAGCGTCCACGACGTCTCGAGCCGCGGGGT
CGCCGCCGGTGAGCCGTCCCCAAGCGCCAGCAAGCTTTCGATCCGGCACA
GGAGTGCGCGGCGACGGCGGTGGCGGCGGCAGCGGC
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